Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30682 * 123.22195 * 2 1 4 4 C 1.29525 * 117.62869 * 180.02562 * 3 2 1 5 5 C 1.50707 * 124.55694 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47372 * 60.00060 * 5 4 3 7 7 C 1.53000 * 109.46699 * 180.02562 * 5 4 3 8 8 C 1.52998 * 109.46766 * 299.99779 * 5 4 3 9 9 S 1.70877 * 110.87781 * 359.97438 * 4 3 2 10 10 C 1.38581 * 123.22720 * 180.02562 * 2 1 3 11 11 C 1.40038 * 126.25490 * 359.97438 * 10 2 1 12 12 H 1.08005 * 119.99897 * 0.02562 * 11 10 2 13 13 C 1.40070 * 120.00194 * 179.97438 * 11 10 2 14 14 N 1.30867 * 119.99980 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00283 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46842 * 60.00453 * 15 13 11 17 17 H 1.48500 * 109.47311 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47048 * 300.00590 * 15 13 11 19 19 H 1.09003 * 109.46696 * 269.99595 * 1 2 3 20 20 H 1.08997 * 109.47231 * 29.99519 * 1 2 3 21 21 H 1.09001 * 109.47204 * 150.00129 * 1 2 3 22 22 H 1.08996 * 109.47265 * 59.99474 * 6 5 4 23 23 H 1.08995 * 109.47133 * 180.02562 * 6 5 4 24 24 H 1.09005 * 109.46694 * 299.99750 * 6 5 4 25 25 H 1.08997 * 109.47241 * 59.99844 * 7 5 4 26 26 H 1.09004 * 109.46845 * 179.97438 * 7 5 4 27 27 H 1.08996 * 109.47314 * 299.99577 * 7 5 4 28 28 H 1.08997 * 109.47645 * 60.00427 * 8 5 4 29 29 H 1.09004 * 109.47001 * 180.02562 * 8 5 4 30 30 H 1.09005 * 109.47606 * 300.00234 * 8 5 4 31 31 H 0.97005 * 120.00125 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2230 1.0932 0.0000 4 6 3.5121 0.9670 -0.0005 5 6 4.4838 2.1189 0.0000 6 6 4.2618 2.9729 1.2498 7 6 5.9152 1.5785 -0.0015 8 6 4.2609 2.9746 -1.2487 9 16 3.9625 -0.6813 -0.0004 10 6 2.2664 -1.1592 -0.0005 11 6 1.7755 -2.4708 -0.0006 12 1 0.7102 -2.6487 -0.0007 13 6 2.6661 -3.5519 -0.0017 14 7 3.9569 -3.3364 -0.0021 15 14 2.0114 -5.3014 -0.0011 16 1 1.1810 -5.5195 -1.2128 17 1 3.1492 -6.2557 -0.0018 18 1 1.1836 -5.5197 1.2123 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3633 0.8900 -0.5137 21 1 -0.3634 -0.8900 -0.5138 22 1 4.4205 2.3633 2.1393 23 1 4.9644 3.8063 1.2499 24 1 3.2420 3.3579 1.2503 25 1 6.0730 0.9703 -0.8922 26 1 6.6181 2.4117 -0.0016 27 1 6.0743 0.9687 0.8877 28 1 3.2412 3.3595 -1.2481 29 1 4.9641 3.8075 -1.2486 30 1 4.4191 2.3661 -2.1392 31 1 4.5737 -4.0851 -0.0025 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082420617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = -24.858877 kcal Electronic energy + Delta-G solvation = -13580.435646 eV Core-core repulsion = 11372.019732 eV Total energy + Delta-G solvation = -2208.415913 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.75462 -37.43223 -35.78330 -31.88367 -29.74822 -28.12647 -28.01545 -25.95509 -24.62869 -20.52827 -20.28534 -18.62089 -17.41746 -16.87016 -15.70034 -15.40173 -14.84514 -14.55983 -14.50014 -13.80664 -13.63642 -13.35799 -13.24409 -13.14017 -12.98446 -12.63259 -12.50142 -12.47043 -12.11764 -11.83655 -11.77328 -11.65489 -11.39467 -11.09829 -9.66201 -9.62033 -8.94474 -8.78867 -6.43073 0.71756 1.36183 1.51267 1.53315 1.59009 2.02471 2.21523 2.41831 3.11676 3.85159 4.17560 4.23053 4.45806 4.75773 4.81555 4.84123 4.89342 4.94377 4.94555 5.02885 5.05021 5.07399 5.09944 5.22254 5.40093 5.51855 5.56371 5.59607 5.88830 6.11114 6.51702 6.52998 7.93702 8.03712 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.038586 B = 0.009442 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.473463 B = 2964.877420 C = 3493.991867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.191 4.191 3 N -0.449 5.449 4 C -0.160 4.160 5 C 0.027 3.973 6 C -0.118 4.118 7 C -0.135 4.135 8 C -0.118 4.118 9 S 0.108 5.892 10 C -0.039 4.039 11 C -0.398 4.398 12 H 0.103 0.897 13 C 0.011 3.989 14 N -0.800 5.800 15 Si 1.009 2.991 16 H -0.256 1.256 17 H -0.261 1.261 18 H -0.256 1.256 19 H 0.041 0.959 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.037 0.963 23 H 0.081 0.919 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.849 1.395 -0.057 3.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.323 4.323 3 N -0.161 5.161 4 C -0.432 4.432 5 C 0.024 3.976 6 C -0.177 4.177 7 C -0.193 4.193 8 C -0.177 4.177 9 S 0.362 5.638 10 C -0.162 4.162 11 C -0.435 4.435 12 H 0.121 0.879 13 C -0.208 4.208 14 N -0.427 5.427 15 Si 0.828 3.172 16 H -0.180 1.180 17 H -0.185 1.185 18 H -0.180 1.180 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.056 0.944 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.869 1.427 -0.057 4.125 hybrid contribution -1.318 -0.745 0.017 1.514 sum 2.552 0.682 -0.039 2.642 Atomic orbital electron populations 1.19588 0.88558 1.00301 0.99688 1.20473 0.97169 0.86527 1.28181 1.65013 1.06005 1.33387 1.11674 1.26635 0.93780 1.00073 1.22687 1.18835 0.91723 0.90606 0.96469 1.21686 1.01158 0.98902 0.95935 1.21808 0.94741 1.01349 1.01368 1.21689 1.01153 0.98895 0.95940 1.83797 1.07754 0.97963 1.74333 1.23534 0.95218 0.98153 0.99291 1.19475 0.96231 0.88925 1.38849 0.87932 1.27205 0.94474 1.07207 0.91865 1.69047 1.04129 1.37133 1.32385 0.84787 0.79008 0.72986 0.80434 1.17950 1.18526 1.17994 0.94028 0.93373 0.92517 0.94392 0.90057 0.94255 0.93410 0.89242 0.93418 0.94244 0.90066 0.94382 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -1.00 10.06 71.24 0.72 -0.28 16 2 C -0.19 -10.28 6.90 42.81 0.30 -9.99 16 3 N -0.45 -23.87 10.45 -176.30 -1.84 -25.71 16 4 C -0.16 -7.85 5.77 88.45 0.51 -7.34 16 5 C 0.03 1.04 0.99 -52.93 -0.05 0.99 16 6 C -0.12 -4.10 8.45 71.98 0.61 -3.49 16 7 C -0.13 -4.48 7.52 71.98 0.54 -3.94 16 8 C -0.12 -4.10 8.44 71.98 0.61 -3.49 16 9 S 0.11 5.54 18.57 -56.49 -1.05 4.50 16 10 C -0.04 -2.15 6.25 22.79 0.14 -2.01 16 11 C -0.40 -20.52 8.93 23.15 0.21 -20.31 16 12 H 0.10 4.95 6.94 -2.91 -0.02 4.93 16 13 C 0.01 0.52 5.50 85.28 0.47 0.99 16 14 N -0.80 -38.63 10.76 21.86 0.24 -38.39 16 15 Si 1.01 34.84 29.56 68.60 2.03 36.87 16 16 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 17 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 18 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 19 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 20 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.06 2.42 7.15 -2.39 -0.02 2.40 16 22 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.05 1.66 7.91 -2.39 -0.02 1.64 16 26 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 27 H 0.05 1.66 7.90 -2.39 -0.02 1.64 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.31 13.16 8.30 -92.70 -0.77 12.39 16 Total: -1.00 -60.65 270.94 4.52 -56.14 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 1.10 Total: 15.47 kcal Atomic # 6 Polarization: -52.91 SS G_CDS: 4.04 Total: -48.86 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -1.61 Total: -64.11 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -1.05 Total: 4.50 kcal Total: -60.65 4.52 -56.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082420617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.276 kcal (2) G-P(sol) polarization free energy of solvation -60.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds