Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38420 * 122.53745 * 2 1 4 4 C 1.33400 * 114.91752 * 179.76143 * 3 2 1 5 5 C 1.50695 * 125.20391 * 180.20411 * 4 3 2 6 6 N 1.46905 * 109.46737 * 90.28492 * 5 4 3 7 7 C 1.46907 * 110.99721 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.46962 * 180.02562 * 7 6 5 9 9 H 1.08008 * 120.00067 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00326 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00428 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 119.99704 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.46879 * 89.99926 * 12 10 8 14 14 H 1.48494 * 109.47200 * 209.99814 * 12 10 8 15 15 H 1.48504 * 109.47039 * 330.00254 * 12 10 8 16 16 S 1.75884 * 109.59088 * 0.47825 * 4 3 2 17 17 C 1.33392 * 122.53725 * 180.28672 * 2 1 3 18 18 C 1.50692 * 125.20364 * 359.97438 * 17 2 1 19 19 H 1.09002 * 109.47152 * 269.71223 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.71324 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.71304 * 1 2 3 22 22 H 1.07992 * 122.54494 * 359.97438 * 3 2 1 23 23 H 1.08991 * 109.47652 * 210.28589 * 5 4 3 24 24 H 1.09001 * 109.47325 * 330.29277 * 5 4 3 25 25 H 1.00895 * 111.00013 * 303.95457 * 6 5 4 26 26 H 1.09002 * 109.46985 * 299.99921 * 7 6 5 27 27 H 1.08992 * 109.47317 * 60.00096 * 7 6 5 28 28 H 0.97006 * 119.99849 * 180.02562 * 11 10 8 29 29 H 1.09001 * 109.47664 * 89.99824 * 18 17 2 30 30 H 1.09001 * 109.46953 * 209.99984 * 18 17 2 31 31 H 1.09002 * 109.47099 * 329.99597 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5737 0.9900 0.0050 5 6 4.5981 2.0953 0.0105 6 7 4.9304 2.4479 1.3974 7 6 5.9281 3.5253 1.4420 8 6 6.2436 3.8586 2.8773 9 1 5.7518 3.3239 3.6766 10 6 7.1601 4.8461 3.1704 11 7 7.4351 5.1373 4.4231 12 14 8.0113 5.7704 1.7881 13 1 7.2100 6.9671 1.4259 14 1 9.3619 6.1958 2.2353 15 1 8.1385 4.8830 0.6041 16 16 3.9386 -0.7305 -0.0037 17 6 2.2245 -1.1245 -0.0056 18 6 1.6537 -2.5191 -0.0121 19 1 -0.3633 -0.0052 1.0277 20 1 -0.3633 -0.8874 -0.5183 21 1 -0.3633 0.8926 -0.5094 22 1 1.7965 2.1463 -0.0004 23 1 5.4979 1.7594 -0.5045 24 1 4.1924 2.9692 -0.4992 25 1 4.1019 2.7012 1.9145 26 1 6.8374 3.1995 0.9367 27 1 5.5314 4.4089 0.9422 28 1 8.0797 5.8324 4.6292 29 1 1.5156 -2.8506 -1.0412 30 1 2.3399 -3.1949 0.4983 31 1 0.6926 -2.5207 0.5022 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083633437.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = -1.920948 kcal Electronic energy + Delta-G solvation = -12728.727779 eV Core-core repulsion = 10521.306529 eV Total energy + Delta-G solvation = -2207.421250 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.52939 -37.29321 -34.78396 -33.15845 -30.67170 -29.62279 -27.01877 -24.85656 -23.18930 -22.25812 -19.21819 -18.97913 -18.06364 -16.71346 -16.07155 -15.76283 -15.68011 -15.08144 -14.53532 -14.46732 -13.95754 -13.86031 -13.60820 -13.38227 -13.08751 -12.79390 -12.63780 -12.40902 -12.21951 -12.15375 -11.82199 -11.55568 -11.48763 -10.83955 -9.45451 -9.21047 -9.12493 -8.32126 -6.37600 0.07339 0.74037 1.16115 1.33860 1.36467 1.47693 1.77039 2.32699 3.01693 3.53325 3.87737 4.02965 4.22927 4.35066 4.48837 4.62606 4.69310 4.74019 4.76647 4.80885 4.88639 4.99812 5.11732 5.15345 5.27669 5.47955 5.53046 5.74026 5.87794 6.48611 6.56629 6.70798 7.27306 8.84750 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.052056 B = 0.005238 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.749875 B = 5344.052679 C = 5410.959294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.121 4.121 3 C -0.134 4.134 4 C -0.181 4.181 5 C 0.127 3.873 6 N -0.685 5.685 7 C 0.175 3.825 8 C -0.532 4.532 9 H 0.035 0.965 10 C 0.009 3.991 11 N -0.947 5.947 12 Si 0.954 3.046 13 H -0.264 1.264 14 H -0.280 1.280 15 H -0.250 1.250 16 S 0.083 5.917 17 C -0.191 4.191 18 C -0.079 4.079 19 H 0.073 0.927 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.144 0.856 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.338 0.662 26 H 0.027 0.973 27 H -0.008 1.008 28 H 0.269 0.731 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.236 -11.891 -13.594 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.166 4.166 4 C -0.298 4.298 5 C -0.003 4.003 6 N -0.316 5.316 7 C 0.046 3.954 8 C -0.570 4.570 9 H 0.053 0.947 10 C -0.189 4.189 11 N -0.587 5.587 12 Si 0.777 3.223 13 H -0.189 1.189 14 H -0.205 1.205 15 H -0.174 1.174 16 S 0.349 5.651 17 C -0.308 4.308 18 C -0.137 4.137 19 H 0.091 0.909 20 H 0.100 0.900 21 H 0.091 0.909 22 H 0.162 0.838 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.045 0.955 27 H 0.009 0.991 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.281 -13.141 -13.429 21.916 hybrid contribution -0.960 2.281 -0.115 2.478 sum -12.241 -10.860 -13.544 21.242 Atomic orbital electron populations 1.20542 0.87789 1.03624 1.02790 1.19059 0.98761 0.91044 1.04379 1.20216 0.92086 1.00334 1.03961 1.24299 0.97823 0.97361 1.10354 1.20352 0.95604 0.93674 0.90679 1.60449 1.15550 1.43923 1.11706 1.19784 0.91916 0.88340 0.95317 1.21306 1.24420 1.18983 0.92261 0.94678 1.25897 0.97037 0.97614 0.98331 1.70056 1.35603 1.32956 1.20116 0.85622 0.78015 0.79211 0.79497 1.18872 1.20524 1.17368 1.84256 1.07120 1.00163 1.73538 1.24724 0.94894 1.00784 1.10406 1.20411 1.01371 0.88298 1.03628 0.90869 0.90025 0.90929 0.83845 0.90751 0.92948 0.84472 0.95487 0.99060 0.92243 0.89476 0.91156 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.60 71.24 0.68 -0.76 16 2 C -0.12 -2.86 5.80 -20.92 -0.12 -2.98 16 3 C -0.13 -3.69 9.85 21.22 0.21 -3.48 16 4 C -0.18 -5.62 6.02 24.59 0.15 -5.47 16 5 C 0.13 4.38 6.18 85.55 0.53 4.91 16 6 N -0.69 -29.42 6.48 -521.99 -3.38 -32.80 16 7 C 0.17 8.55 4.51 85.55 0.39 8.93 16 8 C -0.53 -31.59 9.87 25.60 0.25 -31.33 16 9 H 0.03 2.32 8.06 -2.91 -0.02 2.30 16 10 C 0.01 0.52 5.47 84.65 0.46 0.99 16 11 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 12 Si 0.95 44.33 27.47 68.60 1.88 46.21 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 16 S 0.08 2.38 23.31 -56.49 -1.32 1.06 16 17 C -0.19 -4.49 6.50 24.59 0.16 -4.33 16 18 C -0.08 -1.24 9.74 71.23 0.69 -0.55 16 19 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 20 H 0.08 1.03 7.25 -2.39 -0.02 1.01 16 21 H 0.07 1.07 8.13 -2.38 -0.02 1.05 16 22 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 23 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.34 14.39 8.71 -89.70 -0.78 13.61 16 26 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 27 H -0.01 -0.38 7.57 -2.39 -0.02 -0.40 16 28 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.15 7.32 -2.39 -0.02 1.13 16 Total: -1.00 -67.63 276.83 1.17 -66.46 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.28 Total: 12.81 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: 3.40 Total: -34.07 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -3.08 Total: -92.47 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.32 Total: 1.06 kcal Total: -67.63 1.17 -66.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083633437.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.538 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds