Wall clock time and date at job start Mon Mar 30 2020 03:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00381 * 2 1 4 4 H 1.48493 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46920 * 300.00251 * 3 2 1 6 6 H 1.48501 * 109.46884 * 59.99884 * 3 2 1 7 7 C 1.37879 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00075 * 160.35734 * 7 2 1 9 9 C 1.50706 * 120.00220 * 340.35584 * 7 2 1 10 10 C 1.52998 * 115.54879 * 324.84578 * 9 7 2 11 11 N 1.46891 * 109.47368 * 279.01465 * 10 9 7 12 12 C 1.47474 * 111.00377 * 260.57817 * 11 10 9 13 13 C 1.53515 * 87.93261 * 221.29865 * 12 11 10 14 14 C 1.50698 * 114.16995 * 139.67135 * 13 12 11 15 15 O 1.20830 * 120.00387 * 266.15404 * 14 13 12 16 16 O 1.34228 * 120.00162 * 86.15644 * 14 13 12 17 17 C 1.47488 * 111.00274 * 164.60295 * 11 10 9 18 18 C 1.52992 * 117.51548 * 110.54801 * 9 7 2 19 19 C 1.52997 * 117.49837 * 179.17824 * 9 7 2 20 20 H 0.96998 * 119.99866 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46959 * 159.01421 * 10 9 7 22 22 H 1.09002 * 109.46910 * 39.01726 * 10 9 7 23 23 H 1.09008 * 113.47386 * 336.06030 * 12 11 10 24 24 H 1.08993 * 113.48133 * 106.52665 * 12 11 10 25 25 H 1.08997 * 114.16430 * 272.36885 * 13 12 11 26 26 H 0.96701 * 117.00262 * 179.97438 * 16 14 13 27 27 H 1.08993 * 113.48075 * 253.47597 * 17 11 10 28 28 H 1.08998 * 113.46913 * 23.88024 * 17 11 10 29 29 H 1.09009 * 117.49829 * 214.97127 * 18 9 7 30 30 H 1.08999 * 117.50531 * 359.97438 * 18 9 7 31 31 H 1.09002 * 117.50060 * 359.97438 * 19 9 7 32 32 H 1.08999 * 117.49880 * 144.99999 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0373 -1.2216 -0.3138 9 6 1.3167 -2.4611 0.4399 10 6 0.2980 -2.3010 1.5701 11 7 1.0004 -2.2537 2.8594 12 6 0.9580 -3.5649 3.5329 13 6 0.7003 -2.8181 4.8492 14 6 -0.3164 -3.4784 5.7444 15 8 -1.4762 -3.1440 5.6909 16 8 0.0665 -4.4380 6.6014 17 6 0.1176 -1.7409 3.9238 18 6 1.0246 -3.5144 -0.6306 19 6 2.1295 -3.7566 0.3997 20 1 -0.4850 0.8400 0.0004 21 1 -0.3897 -3.1467 1.5619 22 1 -0.2614 -1.3765 1.4269 23 1 0.1217 -4.1886 3.2167 24 1 1.9105 -4.0943 3.5132 25 1 1.6058 -2.5135 5.3740 26 1 -0.6213 -4.8318 7.1553 27 1 0.3580 -0.7245 4.2352 28 1 -0.9428 -1.8769 3.7114 29 1 0.1066 -4.0936 -0.5296 30 1 1.3295 -3.2912 -1.6529 31 1 3.1617 -3.6927 0.0551 32 1 1.9385 -4.4950 1.1784 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:25 Heat of formation + Delta-G solvation = -23.876117 kcal Electronic energy + Delta-G solvation = -15762.627033 eV Core-core repulsion = 13111.500865 eV Total energy + Delta-G solvation = -2651.126169 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75352 -38.88656 -36.28265 -35.93103 -32.15763 -29.93408 -25.83770 -25.61343 -24.94324 -21.91448 -21.04832 -19.39338 -18.99623 -18.10193 -16.90119 -15.98879 -15.78082 -14.99416 -14.64549 -14.17241 -13.82610 -13.26113 -13.01676 -12.41725 -12.19093 -11.94812 -11.57449 -11.16788 -11.05691 -10.82209 -10.67062 -10.45205 -10.33766 -10.29115 -9.96083 -9.25838 -9.08140 -8.67086 -8.17525 -7.88948 -6.06788 -3.99743 2.19579 3.04937 3.30537 3.39987 3.45672 4.43107 4.44262 4.52240 5.00222 5.16127 5.39501 5.46473 5.70528 5.75227 5.90269 6.05730 6.08521 6.20620 6.28578 6.46606 6.51076 6.65711 6.73760 6.87502 6.98320 7.25453 7.37286 7.67353 7.86585 7.90408 8.03045 8.50268 8.93291 9.56333 10.98229 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.008139 C = 0.007140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.336012 B = 3439.473664 C = 3920.668978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.072 3.928 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.473 4.473 8 H 0.060 0.940 9 C 0.070 3.930 10 C 0.046 3.954 11 N -0.441 5.441 12 C 0.018 3.982 13 C -0.123 4.123 14 C 0.490 3.510 15 O -0.516 6.516 16 O -0.516 6.516 17 C 0.021 3.979 18 C -0.208 4.208 19 C -0.205 4.205 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.129 0.871 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.133 0.867 26 H 0.405 0.595 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 -6.134 9.923 11.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.129 4.129 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.510 4.510 8 H 0.078 0.922 9 C 0.069 3.931 10 C -0.082 4.082 11 N -0.163 5.163 12 C -0.111 4.111 13 C -0.143 4.143 14 C 0.332 3.668 15 O -0.404 6.404 16 O -0.327 6.327 17 C -0.108 4.108 18 C -0.247 4.247 19 C -0.242 4.242 20 H 0.070 0.930 21 H 0.031 0.969 22 H 0.147 0.853 23 H 0.082 0.918 24 H 0.110 0.890 25 H 0.151 0.849 26 H 0.263 0.737 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.448 -5.384 9.450 10.886 hybrid contribution -0.870 0.049 0.451 0.981 sum -0.422 -5.335 9.902 11.256 Atomic orbital electron populations 1.69878 1.06166 1.26480 1.49054 1.24879 0.94587 0.99052 0.94424 0.86619 0.80665 0.83727 0.77479 1.19643 1.21375 1.20780 1.20490 0.97109 0.90514 1.42861 0.92214 1.18751 0.94358 0.87969 0.91984 1.22608 0.94899 1.03307 0.87339 1.68992 1.38130 1.07798 1.01340 1.23863 1.02208 0.95035 0.90035 1.22822 0.98351 0.99400 0.93717 1.23535 0.89035 0.76404 0.77858 1.90711 1.20667 1.62076 1.66900 1.84585 1.46195 1.51350 1.50615 1.23746 0.97793 0.98284 0.90989 1.23028 0.97708 1.07823 0.96145 1.22781 0.95814 1.03557 1.02066 0.92956 0.96891 0.85347 0.91784 0.88977 0.84885 0.73728 0.89235 0.90434 0.92114 0.90448 0.90836 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.19 10.97 55.43 0.61 -23.58 16 2 C 0.07 1.95 5.09 -17.82 -0.09 1.86 16 3 Si 0.89 21.02 29.58 -169.99 -5.03 15.99 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.47 -12.91 9.00 -34.44 -0.31 -13.22 16 8 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 9 C 0.07 1.74 1.96 -155.66 -0.30 1.43 16 10 C 0.05 1.06 4.59 -3.83 -0.02 1.04 16 11 N -0.44 -8.89 6.29 -244.64 -1.54 -10.43 16 12 C 0.02 0.29 6.37 -7.54 -0.05 0.24 16 13 C -0.12 -1.79 4.59 -91.24 -0.42 -2.21 16 14 C 0.49 6.84 7.89 36.00 0.28 7.12 16 15 O -0.52 -8.72 16.70 -18.75 -0.31 -9.04 16 16 O -0.52 -5.52 13.42 -39.25 -0.53 -6.05 16 17 C 0.02 0.37 6.99 -7.54 -0.05 0.32 16 18 C -0.21 -4.81 9.88 -26.74 -0.26 -5.08 16 19 C -0.20 -4.48 9.77 -26.73 -0.26 -4.74 16 20 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 21 H 0.01 0.29 7.01 -51.93 -0.36 -0.08 16 22 H 0.13 3.33 5.13 -51.93 -0.27 3.07 16 23 H 0.06 1.05 7.34 -51.92 -0.38 0.67 16 24 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 25 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16 26 H 0.40 2.50 9.10 45.56 0.41 2.92 16 27 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.08 1.44 7.23 -51.93 -0.38 1.07 16 29 H 0.06 1.32 8.08 -51.92 -0.42 0.90 16 30 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 32 H 0.06 1.27 7.29 -51.93 -0.38 0.89 16 LS Contribution 272.43 15.07 4.11 4.11 Total: -1.00 -30.17 272.43 -7.61 -37.78 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -3.43 Total: 4.45 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.48 Total: -13.23 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: -0.93 Total: -34.01 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.84 Total: -15.09 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.17 -7.61 -37.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.905 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds