Wall clock time and date at job start Mon Mar 30 2020 03:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99774 * 2 1 4 4 C 1.38766 * 120.04429 * 0.02562 * 3 2 1 5 5 C 1.38134 * 119.99234 * 179.97438 * 4 3 2 6 6 C 1.38245 * 120.08224 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.95748 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.46968 * 144.99804 * 7 6 5 9 9 N 1.46903 * 109.46968 * 25.00151 * 7 6 5 10 10 C 1.50693 * 109.47157 * 265.00165 * 7 6 5 11 11 H 1.08004 * 120.00409 * 359.97438 * 10 7 6 12 12 C 1.37878 * 119.99996 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00052 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00149 * 179.97438 * 12 10 7 15 15 H 1.48509 * 109.47014 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47124 * 120.00041 * 14 12 10 17 17 H 1.48495 * 109.47536 * 240.00785 * 14 12 10 18 18 C 1.38471 * 120.08836 * 0.02562 * 6 5 4 19 19 F 1.35102 * 120.00044 * 180.02562 * 18 6 5 20 20 C 1.38386 * 120.00247 * 359.97438 * 18 6 5 21 21 H 1.08998 * 109.47484 * 300.00349 * 1 2 3 22 22 H 1.09007 * 109.46552 * 60.00193 * 1 2 3 23 23 H 1.08996 * 109.47012 * 180.02562 * 1 2 3 24 24 H 1.07994 * 120.00294 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.95770 * 179.97438 * 5 4 3 26 26 H 1.00896 * 110.99802 * 176.04639 * 9 7 6 27 27 H 1.00903 * 110.99956 * 300.00095 * 9 7 6 28 28 H 0.96993 * 120.00040 * 179.97438 * 13 12 10 29 29 H 1.08003 * 120.04035 * 180.27305 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2910 2.3753 0.0005 5 6 1.9192 3.6055 0.0011 6 6 3.2997 3.6787 0.0016 7 6 3.9822 5.0224 0.0016 8 1 4.8969 4.9652 0.5914 9 7 3.0845 6.0275 0.5864 10 6 4.3206 5.4139 -1.4137 11 1 4.0672 4.7554 -2.2315 12 6 4.9536 6.6128 -1.6647 13 7 5.2625 7.4144 -0.6690 14 14 5.3737 7.0978 -3.4190 15 1 4.9240 6.0307 -4.3488 16 1 4.6881 8.3707 -3.7584 17 1 6.8424 7.2778 -3.5447 18 6 4.0563 2.5189 0.0011 19 9 5.4054 2.5925 0.0021 20 6 3.4307 1.2846 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 0.2125 2.3196 0.0014 25 1 1.3311 4.5114 0.0011 26 1 3.5423 6.9238 0.6570 27 1 2.2284 6.0993 0.0571 28 1 5.7082 8.2576 -0.8455 29 1 4.0203 0.3796 0.0046 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084355215.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:33 Heat of formation + Delta-G solvation = -61.725932 kcal Electronic energy + Delta-G solvation = -15250.921094 eV Core-core repulsion = 12474.693329 eV Total energy + Delta-G solvation = -2776.227765 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.10967 -39.68075 -37.23021 -34.41167 -31.54996 -30.18788 -28.95434 -27.09345 -25.86371 -23.06506 -21.87423 -20.07550 -18.08511 -16.59137 -16.43958 -15.60430 -15.45206 -15.38435 -14.68466 -14.51929 -14.16813 -13.70567 -12.85408 -12.54220 -12.34957 -12.24863 -12.05530 -11.59600 -11.28993 -11.00502 -10.74970 -10.51710 -10.41483 -9.93293 -9.68940 -8.67864 -8.32631 -7.61816 -7.21278 -6.10302 -4.26774 1.70952 1.91959 3.21344 3.30101 3.35184 3.39732 4.16580 4.36217 5.02598 5.08413 5.11559 5.19191 5.33356 5.35907 5.48130 5.68698 5.85804 5.96847 6.46401 6.53455 6.63384 6.91033 7.00529 7.23618 7.60689 7.71812 7.73193 8.04913 8.63371 8.88549 9.06192 9.44472 10.87706 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.038341 B = 0.007517 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.107150 B = 3724.224344 C = 3809.187527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.123 3.877 4 C -0.220 4.220 5 C -0.048 4.048 6 C -0.093 4.093 7 C 0.244 3.756 8 H 0.052 0.948 9 N -0.849 5.849 10 C -0.541 4.541 11 H 0.056 0.944 12 C 0.067 3.933 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.132 3.868 19 F -0.131 7.131 20 C -0.193 4.193 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.094 0.906 24 H 0.124 0.876 25 H 0.134 0.866 26 H 0.358 0.642 27 H 0.311 0.689 28 H 0.265 0.735 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.350 -9.395 1.025 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.078 3.922 4 C -0.239 4.239 5 C -0.066 4.066 6 C -0.095 4.095 7 C 0.134 3.866 8 H 0.070 0.930 9 N -0.380 5.380 10 C -0.581 4.581 11 H 0.074 0.926 12 C -0.136 4.136 13 N -0.532 5.532 14 Si 0.726 3.274 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.208 1.208 18 C 0.113 3.887 19 F -0.109 7.109 20 C -0.213 4.213 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.113 0.887 24 H 0.142 0.858 25 H 0.152 0.848 26 H 0.174 0.826 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.106 -9.867 1.731 12.886 hybrid contribution 0.426 0.935 -1.952 2.206 sum -7.680 -8.932 -0.221 11.782 Atomic orbital electron populations 1.22978 0.78858 1.03300 1.01358 1.85999 1.20965 1.27184 1.89400 1.18424 0.91295 0.83971 0.98489 1.21182 0.99593 0.92363 1.10749 1.20639 0.93650 0.96737 0.95622 1.20525 0.93811 0.96328 0.98821 1.17861 0.91104 0.83719 0.93938 0.92976 1.59562 1.08296 1.14485 1.55642 1.21802 1.39255 1.04026 0.93037 0.92569 1.25011 0.94646 0.96368 0.97562 1.69743 1.41466 1.11328 1.30674 0.86437 0.78244 0.78318 0.84429 1.19709 1.20934 1.20776 1.17153 0.77184 0.92944 1.01465 1.91484 1.28796 1.97082 1.93539 1.20068 0.92330 0.97165 1.11726 0.92784 0.92792 0.88724 0.85808 0.84844 0.82579 0.87973 0.92461 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 15 2 O -0.32 -4.75 10.50 -19.44 -0.20 -4.95 15 3 C 0.12 2.08 6.69 -39.22 -0.26 1.82 15 4 C -0.22 -3.60 9.04 -39.42 -0.36 -3.95 15 5 C -0.05 -0.91 9.26 -39.62 -0.37 -1.28 15 6 C -0.09 -2.07 5.00 -104.53 -0.52 -2.59 15 7 C 0.24 6.18 2.72 -70.01 -0.19 5.99 15 8 H 0.05 1.48 7.79 -51.93 -0.40 1.08 15 9 N -0.85 -20.02 8.79 -6.65 -0.06 -20.07 15 10 C -0.54 -14.76 8.71 -34.44 -0.30 -15.06 15 11 H 0.06 1.56 7.74 -52.48 -0.41 1.16 15 12 C 0.07 1.81 5.38 -17.82 -0.10 1.71 15 13 N -0.89 -24.71 11.54 55.43 0.64 -24.07 15 14 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 18 C 0.13 2.82 7.24 -39.44 -0.29 2.53 15 19 F -0.13 -2.94 16.56 2.25 0.04 -2.90 15 20 C -0.19 -3.55 9.97 -39.37 -0.39 -3.94 15 21 H 0.05 0.49 7.66 -51.93 -0.40 0.10 15 22 H 0.05 0.50 7.66 -51.93 -0.40 0.11 15 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.12 1.61 6.30 -52.49 -0.33 1.28 15 25 H 0.13 2.38 6.28 -52.48 -0.33 2.05 15 26 H 0.36 9.04 7.08 -39.29 -0.28 8.76 15 27 H 0.31 6.78 7.20 -39.29 -0.28 6.49 15 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 29 H 0.13 2.17 8.06 -52.48 -0.42 1.75 15 LS Contribution 254.26 15.07 3.83 3.83 Total: -1.00 -28.88 254.26 -5.36 -34.24 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -2.81 Total: 11.29 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.78 Total: -13.48 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.58 Total: -44.14 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.20 Total: -4.95 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.88 -5.36 -34.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084355215.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.486 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds