Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33389 * 122.53371 * 2 1 4 4 S 1.75890 * 109.59004 * 180.02562 * 3 2 1 5 5 C 1.75880 * 90.97009 * 359.82912 * 4 3 2 6 6 C 1.33390 * 109.59248 * 0.30111 * 5 4 3 7 7 C 1.50699 * 122.53823 * 179.90466 * 6 5 4 8 8 N 1.46898 * 109.47159 * 259.71091 * 7 6 5 9 9 C 1.46903 * 111.00250 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.46786 * 35.00532 * 9 8 7 11 11 C 1.52999 * 109.47482 * 275.00495 * 9 8 7 12 12 C 1.50694 * 109.47330 * 154.99973 * 9 8 7 13 13 H 1.08002 * 120.00179 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 9 17 17 H 1.48490 * 109.47339 * 179.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 300.00306 * 16 14 12 19 19 H 1.48504 * 109.46636 * 59.99865 * 16 14 12 20 20 H 1.08997 * 109.47228 * 269.97796 * 1 2 3 21 21 H 1.09003 * 109.46942 * 29.97675 * 1 2 3 22 22 H 1.09000 * 109.46778 * 149.97620 * 1 2 3 23 23 H 1.07996 * 125.21072 * 0.05915 * 3 2 1 24 24 H 1.08000 * 125.20390 * 180.18646 * 5 4 3 25 25 H 1.08998 * 109.47661 * 139.71093 * 7 6 5 26 26 H 1.09006 * 109.47149 * 19.71100 * 7 6 5 27 27 H 1.00899 * 111.00540 * 303.95260 * 8 7 6 28 28 H 1.09001 * 109.47411 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.46412 * 299.99884 * 11 9 8 30 30 H 1.08993 * 109.47298 * 59.99121 * 11 9 8 31 31 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2244 1.1246 0.0000 4 16 3.9386 0.7306 -0.0007 5 6 3.5738 -0.9899 0.0042 6 6 2.2516 -1.1668 -0.0005 7 6 1.6167 -2.5335 -0.0001 8 7 1.1913 -2.8762 -1.3637 9 6 0.5669 -4.2054 -1.4021 10 1 0.0097 -4.3718 -0.4801 11 6 1.6521 -5.2749 -1.5422 12 6 -0.3722 -4.2856 -2.5779 13 1 -0.4928 -3.4344 -3.2317 14 6 -1.0774 -5.4455 -2.8192 15 7 -0.9301 -6.4821 -2.0234 16 14 -2.2421 -5.5447 -4.2763 17 1 -2.8731 -6.8883 -4.3151 18 1 -3.2950 -4.5065 -4.1400 19 1 -1.4833 -5.3182 -5.5326 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.8154 2.1241 0.0009 24 1 4.3079 -1.7821 0.0084 25 1 0.7501 -2.5314 0.6610 26 1 2.3397 -3.2699 0.3509 27 1 0.5701 -2.1738 -1.7361 28 1 1.1887 -6.2611 -1.5711 29 1 2.2092 -5.1084 -2.4641 30 1 2.3313 -5.2169 -0.6918 31 1 -1.4265 -7.2981 -2.1929 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087310668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = 23.334016 kcal Electronic energy + Delta-G solvation = -13265.780233 eV Core-core repulsion = 11059.454120 eV Total energy + Delta-G solvation = -2206.326113 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.67139 -35.47463 -32.52085 -30.89307 -29.05498 -26.95721 -25.32442 -24.18768 -21.81677 -19.77658 -17.86662 -17.34594 -16.39604 -15.12579 -14.66381 -14.04648 -13.86586 -13.34202 -13.17719 -12.81088 -12.42527 -12.03485 -11.75066 -11.62123 -11.44907 -11.03392 -10.84344 -10.77364 -10.60485 -10.24791 -10.12537 -9.92728 -8.84916 -8.50624 -8.43820 -8.06396 -7.24869 -6.02804 -4.09389 1.23975 1.88921 2.18845 2.91309 3.31074 3.35578 3.38564 4.40496 5.07787 5.18011 5.28275 5.49669 5.61452 5.63801 5.77144 5.81468 5.88992 6.14881 6.22919 6.46789 6.72018 6.82353 6.90316 7.14200 7.23124 7.49965 7.77682 7.89599 8.27464 8.39290 8.66584 9.01031 9.56565 11.03445 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.044979 B = 0.006153 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.363571 B = 4549.362294 C = 4858.891568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.088 4.088 3 C -0.223 4.223 4 S 0.061 5.939 5 C -0.194 4.194 6 C -0.084 4.084 7 C 0.115 3.885 8 N -0.682 5.682 9 C 0.211 3.789 10 H 0.001 0.999 11 C -0.124 4.124 12 C -0.519 4.519 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.287 1.287 18 H -0.278 1.278 19 H -0.276 1.276 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.159 0.841 24 H 0.162 0.838 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.331 0.669 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.004 0.996 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 11.891 5.136 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C -0.358 4.358 4 S 0.325 5.675 5 C -0.330 4.330 6 C -0.096 4.096 7 C -0.016 4.016 8 N -0.314 5.314 9 C 0.104 3.896 10 H 0.019 0.981 11 C -0.183 4.183 12 C -0.558 4.558 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.725 3.275 17 H -0.213 1.213 18 H -0.203 1.203 19 H -0.202 1.202 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.176 0.824 24 H 0.180 0.820 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.099 0.901 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.342 12.318 4.969 15.177 hybrid contribution -2.643 -0.740 -0.391 2.772 sum 4.699 11.578 4.578 13.307 Atomic orbital electron populations 1.20586 0.89871 1.03178 1.02181 1.18895 0.97461 0.91722 1.01978 1.25261 0.95528 1.01921 1.13089 1.83995 1.06936 1.01771 1.74804 1.25376 0.99216 0.97986 1.10378 1.18987 0.92664 0.96374 1.01579 1.20597 0.97944 0.90458 0.92639 1.60798 1.47231 1.06087 1.17271 1.19129 0.90953 0.83562 0.95979 0.98093 1.21717 0.97139 1.02384 0.97042 1.21217 1.23428 0.99297 1.11810 0.92293 1.24914 0.96881 0.95597 0.96552 1.69889 1.41824 1.03472 1.37686 0.86580 0.80919 0.77054 0.82968 1.21290 1.20320 1.20193 0.91396 0.91688 0.90694 0.82372 0.82002 0.95114 0.91054 0.85103 0.90090 0.94955 0.97725 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.60 36.01 0.35 -0.98 16 2 C -0.09 -1.30 5.80 -106.25 -0.62 -1.91 16 3 C -0.22 -2.92 10.98 29.04 0.32 -2.60 16 4 S 0.06 0.77 23.34 -107.50 -2.51 -1.73 16 5 C -0.19 -2.88 10.95 29.04 0.32 -2.56 16 6 C -0.08 -1.36 5.31 -106.25 -0.56 -1.93 16 7 C 0.12 2.14 5.01 -4.98 -0.02 2.11 16 8 N -0.68 -14.77 6.29 -109.22 -0.69 -15.46 16 9 C 0.21 5.36 2.60 -68.87 -0.18 5.18 16 10 H 0.00 0.04 7.80 -51.93 -0.41 -0.37 16 11 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 12 C -0.52 -14.25 8.59 -34.44 -0.30 -14.54 16 13 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 16 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 22 H 0.07 1.14 6.01 -51.93 -0.31 0.83 16 23 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 24 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 25 H 0.03 0.57 7.61 -51.93 -0.40 0.18 16 26 H 0.07 1.32 7.36 -51.93 -0.38 0.94 16 27 H 0.33 7.05 6.82 -39.29 -0.27 6.78 16 28 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 270.72 15.07 4.08 4.08 Total: -1.00 -28.43 270.72 -8.07 -36.50 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.11 Total: 3.53 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.45 Total: -18.38 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -0.06 Total: -40.22 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.43 -8.07 -36.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087310668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.835 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds