Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33389 * 122.53371 * 2 1 4 4 S 1.75890 * 109.59004 * 180.02562 * 3 2 1 5 5 C 1.75880 * 90.97009 * 359.82912 * 4 3 2 6 6 C 1.33390 * 109.59248 * 0.30111 * 5 4 3 7 7 C 1.50699 * 122.53823 * 179.90466 * 6 5 4 8 8 N 1.46898 * 109.47159 * 259.71091 * 7 6 5 9 9 C 1.46903 * 111.00250 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.46786 * 35.00532 * 9 8 7 11 11 C 1.52999 * 109.47482 * 275.00495 * 9 8 7 12 12 C 1.50694 * 109.47330 * 154.99973 * 9 8 7 13 13 H 1.08002 * 120.00179 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 9 17 17 H 1.48490 * 109.47339 * 179.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 300.00306 * 16 14 12 19 19 H 1.48504 * 109.46636 * 59.99865 * 16 14 12 20 20 H 1.08997 * 109.47228 * 269.97796 * 1 2 3 21 21 H 1.09003 * 109.46942 * 29.97675 * 1 2 3 22 22 H 1.09000 * 109.46778 * 149.97620 * 1 2 3 23 23 H 1.07996 * 125.21072 * 0.05915 * 3 2 1 24 24 H 1.08000 * 125.20390 * 180.18646 * 5 4 3 25 25 H 1.08998 * 109.47661 * 139.71093 * 7 6 5 26 26 H 1.09006 * 109.47149 * 19.71100 * 7 6 5 27 27 H 1.00899 * 111.00540 * 303.95260 * 8 7 6 28 28 H 1.09001 * 109.47411 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.46412 * 299.99884 * 11 9 8 30 30 H 1.08993 * 109.47298 * 59.99121 * 11 9 8 31 31 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2244 1.1246 0.0000 4 16 3.9386 0.7306 -0.0007 5 6 3.5738 -0.9899 0.0042 6 6 2.2516 -1.1668 -0.0005 7 6 1.6167 -2.5335 -0.0001 8 7 1.1913 -2.8762 -1.3637 9 6 0.5669 -4.2054 -1.4021 10 1 0.0097 -4.3718 -0.4801 11 6 1.6521 -5.2749 -1.5422 12 6 -0.3722 -4.2856 -2.5779 13 1 -0.4928 -3.4344 -3.2317 14 6 -1.0774 -5.4455 -2.8192 15 7 -0.9301 -6.4821 -2.0234 16 14 -2.2421 -5.5447 -4.2763 17 1 -2.8731 -6.8883 -4.3151 18 1 -3.2950 -4.5065 -4.1400 19 1 -1.4833 -5.3182 -5.5326 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.8154 2.1241 0.0009 24 1 4.3079 -1.7821 0.0084 25 1 0.7501 -2.5314 0.6610 26 1 2.3397 -3.2699 0.3509 27 1 0.5701 -2.1738 -1.7361 28 1 1.1887 -6.2611 -1.5711 29 1 2.2092 -5.1084 -2.4641 30 1 2.3313 -5.2169 -0.6918 31 1 -1.4265 -7.2981 -2.1929 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087310668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = 6.226714 kcal Electronic energy + Delta-G solvation = -13266.522061 eV Core-core repulsion = 11059.454120 eV Total energy + Delta-G solvation = -2207.067941 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.88802 -37.27481 -34.43763 -32.16375 -30.72571 -28.28523 -27.34480 -25.71910 -23.02855 -21.75088 -19.20036 -18.48665 -18.19434 -16.94311 -16.24433 -15.58995 -15.37319 -14.89852 -14.54276 -14.08366 -13.86569 -13.60457 -13.14133 -12.95173 -12.90493 -12.79489 -12.61425 -12.40655 -12.19206 -12.15787 -11.90054 -11.55664 -10.90745 -10.57016 -9.59202 -9.18155 -8.98745 -8.13001 -6.27494 0.13963 0.83097 1.10300 1.42940 1.45052 1.52600 1.73729 2.42353 3.15489 3.79522 4.00753 4.12435 4.33767 4.49864 4.59352 4.67682 4.76495 4.79347 4.84776 5.05683 5.09310 5.20743 5.29687 5.46336 5.57771 5.66464 5.68184 5.85426 6.21967 6.46715 6.75556 6.98646 7.42882 8.92457 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.044979 B = 0.006153 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.363571 B = 4549.362294 C = 4858.891568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.111 4.111 3 C -0.217 4.217 4 S 0.110 5.890 5 C -0.208 4.208 6 C -0.104 4.104 7 C 0.121 3.879 8 N -0.679 5.679 9 C 0.215 3.785 10 H -0.028 1.028 11 C -0.113 4.113 12 C -0.539 4.539 13 H 0.058 0.942 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.963 3.037 17 H -0.283 1.283 18 H -0.269 1.269 19 H -0.272 1.272 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.049 0.951 23 H 0.187 0.813 24 H 0.168 0.832 25 H 0.025 0.975 26 H 0.066 0.934 27 H 0.332 0.668 28 H 0.058 0.942 29 H 0.026 0.974 30 H 0.022 0.978 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 13.669 4.726 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.352 4.352 4 S 0.375 5.625 5 C -0.344 4.344 6 C -0.117 4.117 7 C -0.010 4.010 8 N -0.311 5.311 9 C 0.107 3.893 10 H -0.011 1.011 11 C -0.172 4.172 12 C -0.577 4.577 13 H 0.076 0.924 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.788 3.212 17 H -0.208 1.208 18 H -0.195 1.195 19 H -0.198 1.198 20 H 0.095 0.905 21 H 0.103 0.897 22 H 0.068 0.932 23 H 0.204 0.796 24 H 0.186 0.814 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.150 0.850 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.662 14.117 4.567 16.699 hybrid contribution -2.652 -1.225 -0.207 2.928 sum 5.011 12.892 4.360 14.503 Atomic orbital electron populations 1.20560 0.89376 1.02846 1.02689 1.18983 0.98086 0.91747 1.03485 1.25644 0.95803 1.02697 1.11088 1.83845 1.06214 0.99100 1.73345 1.25611 0.98996 1.00167 1.09644 1.18862 0.93425 0.95514 1.03887 1.20498 0.97643 0.92209 0.90659 1.60716 1.46331 1.04560 1.19495 1.18937 0.90687 0.85616 0.94055 1.01092 1.21548 0.97085 1.01055 0.97500 1.21534 1.24234 0.99509 1.12449 0.92390 1.25726 0.98397 0.95200 0.99171 1.70018 1.42575 1.03894 1.39160 0.85543 0.78897 0.77250 0.79528 1.20846 1.19450 1.19770 0.90533 0.89697 0.93242 0.79562 0.81424 0.95701 0.91551 0.84970 0.92348 0.95442 0.95906 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.46 9.60 71.24 0.68 -1.77 16 2 C -0.11 -3.10 5.80 -20.92 -0.12 -3.22 16 3 C -0.22 -5.04 10.98 66.72 0.73 -4.31 16 4 S 0.11 2.50 23.34 -56.49 -1.32 1.18 16 5 C -0.21 -5.89 10.95 66.72 0.73 -5.16 16 6 C -0.10 -3.32 5.31 -20.92 -0.11 -3.43 16 7 C 0.12 4.55 5.01 85.56 0.43 4.98 16 8 N -0.68 -29.84 6.29 -499.46 -3.14 -32.98 16 9 C 0.22 11.19 2.60 44.17 0.11 11.31 16 10 H -0.03 -1.62 7.80 -2.38 -0.02 -1.64 16 11 C -0.11 -5.78 9.19 71.98 0.66 -5.12 16 12 C -0.54 -29.95 8.59 25.60 0.22 -29.73 16 13 H 0.06 3.16 7.62 -2.91 -0.02 3.13 16 14 C 0.01 0.80 5.30 84.66 0.45 1.25 16 15 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 16 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 21 H 0.08 1.78 8.12 -2.39 -0.02 1.77 16 22 H 0.05 1.51 6.01 -2.39 -0.01 1.50 16 23 H 0.19 3.18 8.06 -2.91 -0.02 3.15 16 24 H 0.17 4.39 8.06 -2.91 -0.02 4.37 16 25 H 0.02 0.95 7.61 -2.39 -0.02 0.94 16 26 H 0.07 2.50 7.36 -2.38 -0.02 2.48 16 27 H 0.33 14.37 6.82 -89.69 -0.61 13.76 16 28 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 29 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.02 1.02 7.45 -2.39 -0.02 1.01 16 31 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -60.14 270.72 2.11 -58.04 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.51 Total: 16.24 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 3.79 Total: -35.20 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -2.90 Total: -85.81 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.32 Total: 1.18 kcal Total: -60.14 2.11 -58.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087310668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.264 kcal (2) G-P(sol) polarization free energy of solvation -60.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds