Wall clock time and date at job start Mon Mar 30 2020 03:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50696 * 109.47135 * 120.00851 * 2 1 3 5 5 H 1.08004 * 120.00411 * 119.99958 * 4 2 1 6 6 C 1.37875 * 119.99889 * 299.99421 * 4 2 1 7 7 N 1.31521 * 120.00154 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00222 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47160 * 90.00229 * 8 6 4 10 10 H 1.48501 * 109.47617 * 210.00067 * 8 6 4 11 11 H 1.48496 * 109.47008 * 330.00558 * 8 6 4 12 12 N 1.46499 * 109.46828 * 240.00565 * 2 1 3 13 13 C 1.46510 * 120.00184 * 299.99737 * 12 2 1 14 14 C 1.34774 * 120.00068 * 119.99894 * 12 2 1 15 15 O 1.21545 * 120.00001 * 355.89480 * 14 12 2 16 16 C 1.47846 * 120.00223 * 175.88939 * 14 12 2 17 17 N 1.31984 * 126.85374 * 5.53180 * 16 14 12 18 18 N 1.28812 * 107.90835 * 179.83126 * 17 16 14 19 19 N 1.28660 * 109.79050 * 0.43610 * 18 17 16 20 20 N 1.29017 * 109.09835 * 359.73080 * 19 18 17 21 21 H 0.97001 * 126.53719 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.46980 * 299.99347 * 1 2 3 23 23 H 1.09000 * 109.47312 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47444 * 59.99333 * 1 2 3 25 25 H 0.96993 * 119.99973 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.46617 * 95.66500 * 13 12 2 27 27 H 1.08998 * 109.47413 * 215.66378 * 13 12 2 28 28 H 1.08994 * 109.46896 * 335.66920 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9429 0.8295 2.6035 8 14 2.3225 -1.1199 4.0078 9 1 3.6305 -0.5445 4.4118 10 1 1.3446 -0.9495 5.1122 11 1 2.4881 -2.5657 3.7119 12 7 2.0182 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0834 15 8 3.0253 1.1477 -1.9302 16 6 3.3606 -0.7560 -3.2429 17 7 3.1171 -2.0044 -3.5957 18 7 3.7988 -2.2555 -4.6594 19 7 4.4781 -1.2163 -4.9970 20 7 4.2425 -0.2666 -4.1561 21 1 4.6216 0.6262 -4.1722 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 0.7083 1.1605 3.4845 26 1 0.7947 -2.1448 -2.0834 27 1 2.5035 -2.6069 -1.8971 28 1 1.4313 -2.5712 -0.4768 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087444159.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:42 Heat of formation + Delta-G solvation = 90.460781 kcal Electronic energy + Delta-G solvation = -15527.495804 eV Core-core repulsion = 12810.080063 eV Total energy + Delta-G solvation = -2717.415741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.20003 -39.28297 -35.85243 -34.60841 -33.26047 -32.25794 -29.50813 -26.44067 -25.40365 -25.08374 -23.93562 -21.88087 -19.69595 -18.48981 -17.10677 -17.04199 -16.32959 -15.71549 -14.61286 -14.55520 -13.57269 -13.30678 -12.74564 -12.70278 -12.43465 -12.01016 -11.72385 -11.61746 -11.18128 -10.97290 -10.87494 -10.67575 -10.41972 -10.32578 -10.28117 -9.76610 -9.33581 -8.55319 -7.90750 -6.19582 -4.28630 0.76016 1.90788 2.06530 3.21747 3.24371 3.29120 3.32180 3.46464 4.09784 4.30005 4.57944 5.04192 5.12820 5.29745 5.97320 6.11962 6.28571 6.52253 6.63859 6.68499 6.88408 7.11003 7.27262 7.57139 7.81906 7.97681 8.18545 8.32040 8.46030 8.75874 9.38187 10.85872 Molecular weight = 225.10amu Principal moments of inertia in cm(-1) A = 0.044230 B = 0.007368 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.906585 B = 3799.108371 C = 3918.603010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.068 0.932 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.549 5.549 13 C 0.066 3.934 14 C 0.580 3.420 15 O -0.538 6.538 16 C 0.175 3.825 17 N -0.263 5.263 18 N -0.076 5.076 19 N -0.077 5.077 20 N -0.375 5.375 21 H 0.465 0.535 22 H 0.098 0.902 23 H 0.035 0.965 24 H 0.014 0.986 25 H 0.265 0.735 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 -2.513 -8.381 9.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.085 0.915 4 C -0.570 4.570 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.277 5.277 13 C -0.077 4.077 14 C 0.360 3.640 15 O -0.415 6.415 16 C -0.107 4.107 17 N -0.117 5.117 18 N -0.072 5.072 19 N -0.064 5.064 20 N -0.109 5.109 21 H 0.314 0.686 22 H 0.116 0.884 23 H 0.054 0.946 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.779 -3.031 -8.914 9.817 hybrid contribution 0.533 0.821 1.241 1.581 sum 3.312 -2.210 -7.673 8.644 Atomic orbital electron populations 1.22100 0.97289 1.00005 1.01184 1.19229 0.91555 0.94498 0.78891 0.91463 1.21270 1.32481 1.13395 0.89895 0.91834 1.24879 0.94723 0.94932 0.99024 1.69870 1.35893 1.22485 1.24076 0.86431 0.78637 0.79954 0.82036 1.20555 1.21020 1.19730 1.48243 1.44945 1.12838 1.21712 1.22182 1.01349 0.81536 1.02652 1.16518 0.81226 0.85874 0.80380 1.90833 1.61820 1.13987 1.74854 1.26500 0.95410 0.91932 0.96901 1.75550 1.18992 1.09942 1.07245 1.78575 1.04842 1.16743 1.07021 1.78792 1.19534 0.93810 1.14258 1.46387 1.30814 1.15912 1.17766 0.68558 0.88401 0.94630 0.96702 0.92462 0.92914 0.89525 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.97 37.16 0.33 -2.99 15 2 C 0.26 6.17 2.63 -69.09 -0.18 5.99 15 3 H 0.07 1.83 6.91 -51.93 -0.36 1.47 15 4 C -0.53 -13.60 7.95 -34.44 -0.27 -13.87 15 5 H 0.06 1.60 7.43 -52.48 -0.39 1.21 15 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -23.81 11.32 55.43 0.63 -23.18 15 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 15 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 15 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 12 N -0.55 -11.22 2.75 -176.38 -0.49 -11.70 15 13 C 0.07 1.15 8.63 59.85 0.52 1.67 15 14 C 0.58 11.26 7.68 -12.33 -0.09 11.16 15 15 O -0.54 -11.63 16.44 5.33 0.09 -11.54 15 16 C 0.17 2.82 7.89 -154.59 -1.22 1.60 15 17 N -0.26 -4.31 8.93 32.42 0.29 -4.02 15 18 N -0.08 -1.22 13.41 60.35 0.81 -0.41 15 19 N -0.08 -1.08 13.46 60.35 0.81 -0.27 15 20 N -0.38 -4.89 7.11 32.39 0.23 -4.66 15 21 H 0.46 4.43 8.96 -190.69 -1.71 2.72 15 22 H 0.10 2.43 6.07 -51.93 -0.32 2.11 15 23 H 0.03 0.74 7.67 -51.93 -0.40 0.35 15 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 15 25 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.09 1.43 5.28 -51.93 -0.27 1.15 15 28 H 0.09 1.53 7.11 -51.93 -0.37 1.16 15 LS Contribution 247.35 15.07 3.73 3.73 Total: -1.00 -28.44 247.35 -3.73 -32.17 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.79 Total: -0.50 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -1.01 Total: 5.21 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 2.28 Total: -44.24 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.44 -3.73 -32.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087444159.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.630 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds