Wall clock time and date at job start Mon Mar 30 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 N 1.46496 * 109.47337 * 300.00145 * 4 2 1 6 6 C 1.36942 * 120.00351 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99736 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99808 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00418 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99701 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47332 * 89.99731 * 10 8 6 12 12 H 1.48504 * 109.47191 * 209.99950 * 10 8 6 13 13 H 1.48499 * 109.47256 * 329.99908 * 10 8 6 14 14 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 15 15 C 1.33388 * 125.20278 * 59.99401 * 14 2 1 16 16 C 1.38426 * 114.91704 * 179.97438 * 15 14 2 17 17 C 1.33380 * 114.92268 * 0.02562 * 16 15 14 18 18 S 1.75881 * 109.59563 * 359.75703 * 17 16 15 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 27 27 H 0.97005 * 119.99865 * 0.02562 * 5 4 2 28 28 H 0.97000 * 120.00119 * 180.02562 * 9 8 6 29 29 H 1.07998 * 122.53841 * 359.96206 * 15 14 2 30 30 H 1.08002 * 122.53571 * 180.02562 * 16 15 14 31 31 H 1.08004 * 125.20431 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.5518 -0.0307 2.4453 6 6 1.8822 -0.4989 3.6891 7 1 2.5032 -1.3770 3.7881 8 6 1.4190 0.1552 4.8225 9 7 0.6619 1.2249 4.7018 10 14 1.8704 -0.4831 6.5191 11 1 3.1329 0.1566 6.9689 12 1 0.7823 -0.1578 7.4760 13 1 2.0549 -1.9554 6.4612 14 6 2.0324 -0.7103 -1.2306 15 6 1.7748 -0.3461 -2.4877 16 6 2.3458 -1.1526 -3.4571 17 6 3.0666 -2.1718 -2.9873 18 16 3.0534 -2.1424 -1.2288 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6768 -1.7489 1.2491 26 1 3.1300 -0.7216 1.2489 27 1 0.9937 0.7577 2.3564 28 1 0.3385 1.6822 5.4939 29 1 1.1667 0.5126 -2.7306 30 1 2.2174 -0.9702 -4.5138 31 1 3.5832 -2.9009 -3.5939 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087619676.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:18 Heat of formation + Delta-G solvation = 33.395280 kcal Electronic energy + Delta-G solvation = -13385.275461 eV Core-core repulsion = 11179.385637 eV Total energy + Delta-G solvation = -2205.889824 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.49421 -36.24801 -33.30969 -30.41554 -28.22771 -26.78731 -25.83888 -24.03563 -22.56847 -19.54801 -18.57692 -17.55079 -16.19274 -15.34412 -14.56392 -14.03724 -13.96424 -13.55394 -12.82401 -12.73838 -12.70492 -12.18967 -11.98016 -11.77818 -11.38285 -10.99254 -10.89290 -10.82849 -10.59248 -10.53132 -10.17541 -9.85084 -9.64319 -8.87685 -8.40105 -8.26872 -6.90194 -5.75511 -3.03578 1.22636 1.86091 2.26574 2.93545 3.45135 3.50328 3.51941 4.59410 4.93473 5.17330 5.33220 5.42446 5.55116 5.63036 5.69294 5.84163 6.03423 6.08715 6.21875 6.30602 6.31830 6.39961 6.53667 6.65277 6.67782 6.70405 6.85072 6.87316 7.72085 8.43704 9.55162 10.11785 10.47534 11.47594 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.048896 B = 0.006711 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.507373 B = 4171.051531 C = 4552.499117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.007 4.007 3 C -0.129 4.129 4 C 0.159 3.841 5 N -0.726 5.726 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C -0.136 4.136 15 C -0.156 4.156 16 C -0.130 4.130 17 C -0.239 4.239 18 S 0.108 5.892 19 H 0.074 0.926 20 H 0.053 0.947 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.386 0.614 28 H 0.255 0.745 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -3.532 -15.016 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.009 4.009 3 C -0.187 4.187 4 C 0.030 3.970 5 N -0.372 5.372 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C -0.254 4.254 15 C -0.186 4.186 16 C -0.161 4.161 17 C -0.374 4.374 18 S 0.373 5.627 19 H 0.093 0.907 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.221 0.779 28 H 0.065 0.935 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.216 -4.568 -13.780 14.869 hybrid contribution -0.511 0.732 -0.269 0.932 sum 2.705 -3.836 -14.049 14.812 Atomic orbital electron populations 1.21812 0.92946 1.02016 1.01962 1.19387 0.96107 0.95162 0.90245 1.21813 1.00991 0.93973 1.01965 1.20725 0.96204 0.94370 0.85653 1.42353 1.61351 1.33362 1.00094 1.19239 1.25549 1.08659 0.83508 0.91219 1.24714 1.00470 0.97953 0.97766 1.69651 1.39359 1.20940 1.28366 0.86188 0.77433 0.78132 0.84442 1.21737 1.21781 1.20772 1.24726 1.02666 0.99442 0.98570 1.19995 1.04647 1.02647 0.91299 1.20081 0.99851 0.95811 1.00402 1.25623 1.08611 1.04938 0.98250 1.84504 1.49170 1.26828 1.02174 0.90732 0.92809 0.93307 0.90733 0.92812 0.93306 0.96051 0.96057 0.77903 0.93516 0.84673 0.84975 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.16 37.16 0.30 -1.85 16 2 C -0.01 -0.11 0.67 -155.66 -0.10 -0.22 16 3 C -0.13 -2.15 8.16 37.16 0.30 -1.85 16 4 C 0.16 3.33 4.24 -4.05 -0.02 3.31 16 5 N -0.73 -18.43 5.00 -59.91 -0.30 -18.73 16 6 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 10 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C -0.14 -2.10 5.13 -36.00 -0.18 -2.28 16 15 C -0.16 -2.12 9.31 -41.21 -0.38 -2.50 16 16 C -0.13 -1.58 10.18 -41.21 -0.42 -2.00 16 17 C -0.24 -2.91 11.23 29.03 0.33 -2.58 16 18 S 0.11 1.57 21.84 -107.50 -2.35 -0.78 16 19 H 0.07 1.39 6.86 -51.93 -0.36 1.03 16 20 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 21 H 0.05 0.69 7.94 -51.93 -0.41 0.28 16 22 H 0.07 1.39 6.86 -51.93 -0.36 1.03 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.69 7.94 -51.93 -0.41 0.28 16 25 H 0.02 0.47 7.96 -51.93 -0.41 0.05 16 26 H 0.02 0.47 7.95 -51.93 -0.41 0.05 16 27 H 0.39 10.08 5.36 -40.82 -0.22 9.86 16 28 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.14 1.64 8.01 -52.49 -0.42 1.22 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 270.76 15.07 4.08 4.08 Total: -1.00 -29.96 270.76 -7.53 -37.49 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.24 Total: 5.18 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.42 Total: -17.33 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.42 Total: -46.18 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.35 Total: -0.78 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.96 -7.53 -37.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087619676.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.888 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds