Wall clock time and date at job start Mon Mar 30 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 N 1.46496 * 109.47337 * 300.00145 * 4 2 1 6 6 C 1.36942 * 120.00351 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99736 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99808 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00418 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99701 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47332 * 89.99731 * 10 8 6 12 12 H 1.48504 * 109.47191 * 209.99950 * 10 8 6 13 13 H 1.48499 * 109.47256 * 329.99908 * 10 8 6 14 14 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 15 15 C 1.33388 * 125.20278 * 59.99401 * 14 2 1 16 16 C 1.38426 * 114.91704 * 179.97438 * 15 14 2 17 17 C 1.33380 * 114.92268 * 0.02562 * 16 15 14 18 18 S 1.75881 * 109.59563 * 359.75703 * 17 16 15 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 27 27 H 0.97005 * 119.99865 * 0.02562 * 5 4 2 28 28 H 0.97000 * 120.00119 * 180.02562 * 9 8 6 29 29 H 1.07998 * 122.53841 * 359.96206 * 15 14 2 30 30 H 1.08002 * 122.53571 * 180.02562 * 16 15 14 31 31 H 1.08004 * 125.20431 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.5518 -0.0307 2.4453 6 6 1.8822 -0.4989 3.6891 7 1 2.5032 -1.3770 3.7881 8 6 1.4190 0.1552 4.8225 9 7 0.6619 1.2249 4.7018 10 14 1.8704 -0.4831 6.5191 11 1 3.1329 0.1566 6.9689 12 1 0.7823 -0.1578 7.4760 13 1 2.0549 -1.9554 6.4612 14 6 2.0324 -0.7103 -1.2306 15 6 1.7748 -0.3461 -2.4877 16 6 2.3458 -1.1526 -3.4571 17 6 3.0666 -2.1718 -2.9873 18 16 3.0534 -2.1424 -1.2288 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6768 -1.7489 1.2491 26 1 3.1300 -0.7216 1.2489 27 1 0.9937 0.7577 2.3564 28 1 0.3385 1.6822 5.4939 29 1 1.1667 0.5126 -2.7306 30 1 2.2174 -0.9702 -4.5138 31 1 3.5832 -2.9009 -3.5939 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087619676.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:18 Heat of formation + Delta-G solvation = 16.014691 kcal Electronic energy + Delta-G solvation = -13386.029140 eV Core-core repulsion = 11179.385637 eV Total energy + Delta-G solvation = -2206.643503 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.75094 -37.59505 -35.20991 -32.39065 -29.37124 -28.14046 -27.60251 -25.53862 -24.15130 -20.90564 -19.63658 -19.50689 -17.57176 -16.75251 -16.23656 -15.66913 -15.51830 -15.11234 -14.43463 -14.21893 -14.01543 -13.35314 -13.15364 -13.14582 -12.92699 -12.85711 -12.67554 -12.27497 -12.12341 -12.00210 -11.89446 -11.56969 -11.25679 -10.97850 -9.46653 -9.37306 -8.99892 -7.96205 -5.24778 0.18888 0.78807 1.23791 1.46765 1.48435 1.56999 1.94714 2.55056 3.37028 3.62010 3.90012 4.06295 4.22046 4.31485 4.32828 4.68021 4.77235 4.77429 4.84446 4.89038 5.04121 5.07753 5.08398 5.30148 5.37661 5.40704 5.46741 5.53849 5.69496 6.26186 7.33296 8.06495 8.33398 9.27316 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.048896 B = 0.006711 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.507373 B = 4171.051531 C = 4552.499117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.003 3.997 3 C -0.124 4.124 4 C 0.162 3.838 5 N -0.735 5.735 6 C -0.250 4.250 7 H 0.071 0.929 8 C -0.070 4.070 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.286 1.286 12 H -0.293 1.293 13 H -0.272 1.272 14 C -0.164 4.164 15 C -0.142 4.142 16 C -0.135 4.135 17 C -0.221 4.221 18 S 0.061 5.939 19 H 0.047 0.953 20 H 0.048 0.952 21 H 0.078 0.922 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.379 0.621 28 H 0.253 0.747 29 H 0.153 0.847 30 H 0.166 0.834 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.814 -4.008 -16.950 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.000 4.000 3 C -0.182 4.182 4 C 0.035 3.965 5 N -0.379 5.379 6 C -0.381 4.381 7 H 0.089 0.911 8 C -0.263 4.263 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.213 1.213 12 H -0.219 1.219 13 H -0.197 1.197 14 C -0.282 4.282 15 C -0.172 4.172 16 C -0.165 4.165 17 C -0.356 4.356 18 S 0.326 5.674 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.097 0.903 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.214 0.786 28 H 0.061 0.939 29 H 0.171 0.829 30 H 0.184 0.816 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.561 -5.065 -15.737 16.911 hybrid contribution -0.584 0.841 0.205 1.044 sum 2.977 -4.224 -15.531 16.369 Atomic orbital electron populations 1.21748 0.92673 1.01692 1.02055 1.19165 0.96280 0.95124 0.89392 1.21749 1.00595 0.93773 1.02056 1.20774 0.95550 0.94074 0.86097 1.42500 1.61283 1.33404 1.00752 1.19606 1.25056 1.08537 0.84930 0.91140 1.25522 1.00895 0.98436 1.01418 1.69801 1.40656 1.22200 1.29075 0.85150 0.76927 0.78007 0.79728 1.21315 1.21895 1.19661 1.24452 1.04889 1.00496 0.98373 1.20312 1.03466 1.02732 0.90652 1.20418 0.99153 0.95132 1.01761 1.25958 1.08023 1.05350 0.96241 1.84669 1.49973 1.27373 1.05419 0.93400 0.93314 0.90321 0.93402 0.93318 0.90321 0.96835 0.96820 0.78642 0.93854 0.82909 0.81647 0.79683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.16 71.98 0.59 -3.47 16 2 C 0.00 0.09 0.67 -52.93 -0.04 0.05 16 3 C -0.12 -4.06 8.16 71.98 0.59 -3.48 16 4 C 0.16 6.98 4.24 86.38 0.37 7.34 16 5 N -0.74 -38.40 5.00 -343.47 -1.72 -40.12 16 6 C -0.25 -14.35 9.99 84.03 0.84 -13.52 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 8 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 9 N -0.97 -59.46 13.06 21.65 0.28 -59.17 16 10 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 14 C -0.16 -4.83 5.13 24.59 0.13 -4.71 16 15 C -0.14 -3.37 9.31 21.22 0.20 -3.18 16 16 C -0.13 -2.71 10.18 21.21 0.22 -2.49 16 17 C -0.22 -4.65 11.23 66.72 0.75 -3.90 16 18 S 0.06 1.72 21.84 -56.49 -1.23 0.48 16 19 H 0.05 1.81 6.86 -2.39 -0.02 1.80 16 20 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.08 2.07 7.94 -2.38 -0.02 2.05 16 22 H 0.05 1.81 6.86 -2.39 -0.02 1.80 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.08 2.07 7.94 -2.39 -0.02 2.05 16 25 H 0.01 0.61 7.96 -2.39 -0.02 0.59 16 26 H 0.01 0.62 7.95 -2.39 -0.02 0.60 16 27 H 0.38 20.58 5.36 -92.70 -0.50 20.08 16 28 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.15 3.06 8.01 -2.91 -0.02 3.04 16 30 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -64.54 270.76 4.07 -60.47 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.61 Total: 20.49 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 4.10 Total: -30.97 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -1.44 Total: -99.30 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.23 Total: 0.48 kcal Total: -64.54 4.07 -60.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087619676.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.482 kcal (2) G-P(sol) polarization free energy of solvation -64.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds