Wall clock time and date at job start Mon Mar 30 2020 02:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38299 * 119.98201 * 2 1 4 4 C 1.38217 * 120.12323 * 179.74958 * 3 2 1 5 5 C 1.38224 * 120.09406 * 0.50025 * 4 3 2 6 6 C 1.50703 * 120.01286 * 179.74709 * 5 4 3 7 7 H 1.09001 * 109.46796 * 219.72157 * 6 5 4 8 8 N 1.46890 * 109.47446 * 339.72740 * 6 5 4 9 9 C 1.50701 * 109.46977 * 99.73072 * 6 5 4 10 10 H 1.08005 * 120.00380 * 356.31651 * 9 6 5 11 11 C 1.37873 * 120.00061 * 176.32094 * 9 6 5 12 12 N 1.31523 * 120.00002 * 353.12650 * 11 9 6 13 13 Si 1.86807 * 120.00311 * 173.13323 * 11 9 6 14 14 H 1.48501 * 109.46850 * 265.18146 * 13 11 9 15 15 H 1.48499 * 109.46802 * 25.18010 * 13 11 9 16 16 H 1.48497 * 109.47100 * 145.18111 * 13 11 9 17 17 C 1.38622 * 119.96930 * 359.47366 * 5 4 3 18 18 O 1.35951 * 120.06073 * 180.25122 * 17 5 4 19 19 C 1.38288 * 119.98304 * 179.97438 * 2 1 3 20 20 F 1.35097 * 120.04993 * 0.02775 * 19 2 1 21 21 H 1.09003 * 109.47039 * 270.02940 * 1 2 3 22 22 H 1.08995 * 109.47084 * 30.02583 * 1 2 3 23 23 H 1.08997 * 109.47296 * 150.02420 * 1 2 3 24 24 H 1.08004 * 119.93973 * 359.97438 * 3 2 1 25 25 H 1.08003 * 119.95384 * 180.24911 * 4 3 2 26 26 H 1.00898 * 111.00327 * 66.74591 * 8 6 5 27 27 H 1.00901 * 111.00132 * 190.70083 * 8 6 5 28 28 H 0.97004 * 119.99767 * 179.97438 * 12 11 9 29 29 H 0.96700 * 113.99746 * 90.00464 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1979 0.0000 4 6 3.5803 1.2013 0.0052 5 6 4.2764 0.0072 0.0000 6 6 5.7834 0.0131 0.0000 7 1 6.1497 -0.7731 -0.6602 8 7 6.2680 1.3161 -0.4743 9 6 6.2867 -0.2312 1.3993 10 1 5.5871 -0.3169 2.2176 11 6 7.6404 -0.3452 1.6350 12 7 8.4832 -0.3764 0.6258 13 14 8.2774 -0.4554 3.3876 14 1 8.6650 0.8982 3.8594 15 1 7.2127 -1.0004 4.2678 16 1 9.4607 -1.3517 3.4287 17 6 3.5876 -1.1958 0.0006 18 8 4.2704 -2.3715 0.0006 19 6 2.1981 -1.1978 0.0005 20 9 1.5233 -2.3682 0.0005 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3634 -0.8902 -0.5134 24 1 1.6569 2.1325 -0.0004 25 1 4.1173 2.1384 0.0093 26 1 6.0351 2.0484 0.1797 27 1 7.2613 1.2905 -0.6497 28 1 9.4356 -0.4562 0.7916 29 1 4.4681 -2.7114 0.8841 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095706673.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:54 Heat of formation + Delta-G solvation = -76.036165 kcal Electronic energy + Delta-G solvation = -15426.649435 eV Core-core repulsion = 12649.801132 eV Total energy + Delta-G solvation = -2776.848303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.39877 -39.14754 -36.26454 -34.86766 -32.14916 -30.54976 -29.08127 -27.03685 -25.50159 -22.37607 -22.04046 -20.01256 -17.58108 -16.64132 -16.38599 -16.28527 -15.38820 -14.85725 -14.54544 -13.97462 -13.52536 -13.24679 -13.08274 -12.81795 -12.48648 -12.22665 -11.68636 -11.51750 -11.17758 -11.09088 -10.82097 -10.77592 -10.14526 -10.04948 -9.47997 -8.72135 -8.03124 -7.88164 -7.33421 -6.18787 -4.33378 1.68211 1.77528 3.16607 3.25507 3.27896 4.05723 4.28454 4.57892 4.91965 5.05144 5.17523 5.40114 5.56076 5.70920 5.73975 5.99886 6.02204 6.38448 6.44538 6.56973 6.70690 6.95729 7.02892 7.37117 7.62430 7.65134 7.98819 8.31185 8.60597 8.75427 8.94762 9.36166 10.81591 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.036112 B = 0.008422 C = 0.007851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.176412 B = 3323.815937 C = 3565.673391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.138 4.138 3 C -0.109 4.109 4 C -0.105 4.105 5 C -0.030 4.030 6 C 0.242 3.758 7 H 0.064 0.936 8 N -0.849 5.849 9 C -0.547 4.547 10 H 0.054 0.946 11 C 0.071 3.929 12 N -0.886 5.886 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.274 1.274 16 H -0.285 1.285 17 C 0.075 3.925 18 O -0.482 6.482 19 C 0.060 3.940 20 F -0.143 7.143 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.123 0.877 25 H 0.133 0.867 26 H 0.315 0.685 27 H 0.349 0.651 28 H 0.266 0.734 29 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 1.922 0.617 10.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.031 4.031 6 C 0.132 3.868 7 H 0.081 0.919 8 N -0.377 5.377 9 C -0.587 4.587 10 H 0.072 0.928 11 C -0.133 4.133 12 N -0.523 5.523 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.198 1.198 16 H -0.211 1.211 17 C 0.029 3.971 18 O -0.292 6.292 19 C 0.041 3.959 20 F -0.122 7.122 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.141 0.859 25 H 0.151 0.849 26 H 0.125 0.875 27 H 0.163 0.837 28 H 0.076 0.924 29 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.539 1.775 -0.687 10.710 hybrid contribution 1.015 -0.430 2.426 2.664 sum -9.524 1.346 1.738 9.775 Atomic orbital electron populations 1.20601 0.90891 1.02566 1.02048 1.19599 0.96252 0.91747 1.06347 1.20843 0.94346 0.96308 1.01215 1.20992 0.92855 0.98715 0.99740 1.20793 0.99157 0.90641 0.92543 1.17883 0.83746 0.90069 0.95092 0.91862 1.59478 1.21979 1.06347 1.49883 1.21658 0.91939 1.51530 0.93554 0.92757 1.25007 0.96904 0.94117 0.97302 1.69883 1.03076 1.49109 1.30265 0.86523 0.78558 0.78048 0.84533 1.20594 1.19845 1.21075 1.18257 0.87269 0.86993 1.04573 1.84754 1.75702 1.35247 1.33462 1.17933 0.89388 0.81071 1.07531 1.91398 1.80207 1.46295 1.94294 0.91555 0.91467 0.91816 0.85878 0.84888 0.87546 0.83744 0.92434 0.75485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.83 36.01 0.35 -0.97 15 2 C -0.14 -2.28 5.88 -104.58 -0.62 -2.89 15 3 C -0.11 -1.75 9.70 -39.57 -0.38 -2.13 15 4 C -0.10 -1.95 9.27 -39.59 -0.37 -2.32 15 5 C -0.03 -0.65 5.04 -104.48 -0.53 -1.17 15 6 C 0.24 5.89 2.47 -70.02 -0.17 5.71 15 7 H 0.06 1.77 7.85 -51.93 -0.41 1.36 15 8 N -0.85 -19.24 8.47 -6.65 -0.06 -19.29 15 9 C -0.55 -14.04 8.61 -34.44 -0.30 -14.34 15 10 H 0.05 1.40 7.75 -52.48 -0.41 1.00 15 11 C 0.07 1.83 5.36 -17.82 -0.10 1.73 15 12 N -0.89 -23.88 12.16 55.43 0.67 -23.20 15 13 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 15 14 H -0.28 -6.30 7.11 56.52 0.40 -5.89 15 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 17 C 0.08 1.58 6.67 -39.18 -0.26 1.32 15 18 O -0.48 -10.11 12.60 -19.59 -0.25 -10.35 15 19 C 0.06 1.15 7.25 -39.30 -0.28 0.86 15 20 F -0.14 -2.66 16.32 2.25 0.04 -2.62 15 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.07 0.71 8.09 -51.93 -0.42 0.29 15 23 H 0.06 0.80 7.64 -51.93 -0.40 0.40 15 24 H 0.12 1.56 8.06 -52.48 -0.42 1.14 15 25 H 0.13 2.35 6.43 -52.48 -0.34 2.01 15 26 H 0.31 6.68 7.62 -39.29 -0.30 6.38 15 27 H 0.35 8.43 7.83 -39.29 -0.31 8.12 15 28 H 0.27 6.86 8.31 -40.82 -0.34 6.53 15 29 H 0.39 6.89 9.06 45.56 0.41 7.30 15 LS Contribution 257.26 15.07 3.88 3.88 Total: -1.00 -27.89 257.26 -5.53 -33.42 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -2.14 Total: 17.15 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.65 Total: -14.20 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.62 Total: -42.50 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.25 Total: -10.35 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.89 -5.53 -33.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095706673.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.614 kcal (2) G-P(sol) polarization free energy of solvation -27.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds