Wall clock time and date at job start Mon Mar 30 2020 02:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38299 * 119.98201 * 2 1 4 4 C 1.38217 * 120.12323 * 179.74958 * 3 2 1 5 5 C 1.38224 * 120.09406 * 0.50025 * 4 3 2 6 6 C 1.50703 * 120.01286 * 179.74709 * 5 4 3 7 7 H 1.09001 * 109.46796 * 219.72157 * 6 5 4 8 8 N 1.46890 * 109.47446 * 339.72740 * 6 5 4 9 9 C 1.50701 * 109.46977 * 99.73072 * 6 5 4 10 10 H 1.08005 * 120.00380 * 356.31651 * 9 6 5 11 11 C 1.37873 * 120.00061 * 176.32094 * 9 6 5 12 12 N 1.31523 * 120.00002 * 353.12650 * 11 9 6 13 13 Si 1.86807 * 120.00311 * 173.13323 * 11 9 6 14 14 H 1.48501 * 109.46850 * 265.18146 * 13 11 9 15 15 H 1.48499 * 109.46802 * 25.18010 * 13 11 9 16 16 H 1.48497 * 109.47100 * 145.18111 * 13 11 9 17 17 C 1.38622 * 119.96930 * 359.47366 * 5 4 3 18 18 O 1.35951 * 120.06073 * 180.25122 * 17 5 4 19 19 C 1.38288 * 119.98304 * 179.97438 * 2 1 3 20 20 F 1.35097 * 120.04993 * 0.02775 * 19 2 1 21 21 H 1.09003 * 109.47039 * 270.02940 * 1 2 3 22 22 H 1.08995 * 109.47084 * 30.02583 * 1 2 3 23 23 H 1.08997 * 109.47296 * 150.02420 * 1 2 3 24 24 H 1.08004 * 119.93973 * 359.97438 * 3 2 1 25 25 H 1.08003 * 119.95384 * 180.24911 * 4 3 2 26 26 H 1.00898 * 111.00327 * 66.74591 * 8 6 5 27 27 H 1.00901 * 111.00132 * 190.70083 * 8 6 5 28 28 H 0.97004 * 119.99767 * 179.97438 * 12 11 9 29 29 H 0.96700 * 113.99746 * 90.00464 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1979 0.0000 4 6 3.5803 1.2013 0.0052 5 6 4.2764 0.0072 0.0000 6 6 5.7834 0.0131 0.0000 7 1 6.1497 -0.7731 -0.6602 8 7 6.2680 1.3161 -0.4743 9 6 6.2867 -0.2312 1.3993 10 1 5.5871 -0.3169 2.2176 11 6 7.6404 -0.3452 1.6350 12 7 8.4832 -0.3764 0.6258 13 14 8.2774 -0.4554 3.3876 14 1 8.6650 0.8982 3.8594 15 1 7.2127 -1.0004 4.2678 16 1 9.4607 -1.3517 3.4287 17 6 3.5876 -1.1958 0.0006 18 8 4.2704 -2.3715 0.0006 19 6 2.1981 -1.1978 0.0005 20 9 1.5233 -2.3682 0.0005 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3634 -0.8902 -0.5134 24 1 1.6569 2.1325 -0.0004 25 1 4.1173 2.1384 0.0093 26 1 6.0351 2.0484 0.1797 27 1 7.2613 1.2905 -0.6497 28 1 9.4356 -0.4562 0.7916 29 1 4.4681 -2.7114 0.8841 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095706673.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:54 Heat of formation + Delta-G solvation = -96.142023 kcal Electronic energy + Delta-G solvation = -15427.521291 eV Core-core repulsion = 12649.801132 eV Total energy + Delta-G solvation = -2777.720159 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.85152 -40.65576 -37.77687 -36.66550 -33.90140 -32.13361 -30.54151 -28.63715 -27.22084 -23.99807 -23.50968 -21.60541 -19.16009 -18.58277 -17.93340 -17.79763 -16.88414 -16.58114 -16.21484 -15.56281 -15.02149 -14.87472 -14.49868 -14.17298 -13.94381 -13.68352 -13.25411 -13.12144 -12.89452 -12.65999 -12.45396 -12.34904 -11.86244 -11.82303 -11.15739 -10.70695 -9.50636 -9.41848 -9.18149 -8.15528 -6.38641 0.22584 0.33664 1.37152 1.40358 1.49432 2.34755 2.65353 3.03944 3.14891 3.48990 3.86357 4.11792 4.19851 4.40218 4.64627 4.69702 4.82264 4.90955 5.08732 5.15032 5.26670 5.39070 5.52825 5.62170 5.81542 5.94735 6.05014 6.65731 6.79055 6.80588 7.06474 7.34930 8.82247 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.036112 B = 0.008422 C = 0.007851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.176412 B = 3323.815937 C = 3565.673391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.125 4.125 3 C -0.095 4.095 4 C -0.107 4.107 5 C -0.064 4.064 6 C 0.250 3.750 7 H 0.014 0.986 8 N -0.838 5.838 9 C -0.554 4.554 10 H 0.049 0.951 11 C 0.027 3.973 12 N -0.914 5.914 13 Si 0.959 3.041 14 H -0.273 1.273 15 H -0.271 1.271 16 H -0.286 1.286 17 C 0.052 3.948 18 O -0.500 6.500 19 C 0.046 3.954 20 F -0.144 7.144 21 H 0.083 0.917 22 H 0.096 0.904 23 H 0.062 0.938 24 H 0.169 0.831 25 H 0.141 0.859 26 H 0.325 0.675 27 H 0.339 0.661 28 H 0.267 0.733 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 3.325 1.491 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.125 4.125 5 C -0.065 4.065 6 C 0.140 3.860 7 H 0.032 0.968 8 N -0.365 5.365 9 C -0.593 4.593 10 H 0.067 0.933 11 C -0.175 4.175 12 N -0.552 5.552 13 Si 0.785 3.215 14 H -0.199 1.199 15 H -0.196 1.196 16 H -0.212 1.212 17 C 0.006 3.994 18 O -0.311 6.311 19 C 0.026 3.974 20 F -0.123 7.123 21 H 0.102 0.898 22 H 0.115 0.885 23 H 0.081 0.919 24 H 0.187 0.813 25 H 0.159 0.841 26 H 0.135 0.865 27 H 0.151 0.849 28 H 0.076 0.924 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -12.599 3.184 0.192 12.997 hybrid contribution 1.561 -0.863 2.118 2.769 sum -11.038 2.321 2.310 11.514 Atomic orbital electron populations 1.20733 0.87638 1.04068 1.03596 1.20131 0.98523 0.90654 1.03320 1.21274 0.93172 0.98011 0.98825 1.21170 0.94349 0.97729 0.99253 1.20632 0.97614 0.92314 0.95967 1.17549 0.85984 0.89142 0.93319 0.96846 1.59429 1.21056 1.06048 1.49951 1.21838 0.92087 1.51268 0.94121 0.93304 1.25721 0.97118 0.93855 1.00768 1.69995 1.03237 1.49951 1.32051 0.85534 0.77709 0.78078 0.80192 1.19900 1.19580 1.21186 1.18504 0.88401 0.86617 1.05850 1.84712 1.76201 1.35772 1.34411 1.18094 0.88741 0.82133 1.08423 1.91390 1.79943 1.46572 1.94386 0.89807 0.88491 0.91890 0.81318 0.84099 0.86452 0.84921 0.92426 0.74657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.16 9.83 71.24 0.70 -1.46 15 2 C -0.13 -3.72 5.88 -19.84 -0.12 -3.83 15 3 C -0.10 -2.69 9.70 22.28 0.22 -2.47 15 4 C -0.11 -3.80 9.27 22.26 0.21 -3.59 15 5 C -0.06 -2.79 5.04 -19.78 -0.10 -2.89 15 6 C 0.25 12.57 2.47 43.43 0.11 12.68 15 7 H 0.01 0.81 7.85 -2.39 -0.02 0.79 15 8 N -0.84 -38.58 8.47 -174.97 -1.48 -40.07 15 9 C -0.55 -28.97 8.61 25.60 0.22 -28.75 15 10 H 0.05 2.56 7.75 -2.91 -0.02 2.53 15 11 C 0.03 1.39 5.36 84.65 0.45 1.84 15 12 N -0.91 -50.37 12.16 21.45 0.26 -50.11 15 13 Si 0.96 41.74 29.54 68.60 2.03 43.77 15 14 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 16 H -0.29 -12.42 7.11 99.48 0.71 -11.71 15 17 C 0.05 2.22 6.67 22.53 0.15 2.37 15 18 O -0.50 -21.94 12.60 -93.00 -1.17 -23.11 15 19 C 0.05 1.68 7.25 22.45 0.16 1.85 15 20 F -0.14 -5.23 16.32 44.97 0.73 -4.49 15 21 H 0.08 1.52 8.14 -2.39 -0.02 1.50 15 22 H 0.10 1.48 8.09 -2.39 -0.02 1.46 15 23 H 0.06 1.35 7.64 -2.39 -0.02 1.33 15 24 H 0.17 3.26 8.06 -2.91 -0.02 3.23 15 25 H 0.14 4.69 6.43 -2.91 -0.02 4.67 15 26 H 0.32 13.72 7.62 -89.70 -0.68 13.04 15 27 H 0.34 16.79 7.83 -89.69 -0.70 16.09 15 28 H 0.27 14.00 8.31 -92.71 -0.77 13.23 15 29 H 0.40 14.91 9.06 -74.06 -0.67 14.24 15 Total: -1.00 -61.10 257.26 1.52 -59.58 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -0.85 Total: 38.68 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 2.00 Total: -24.24 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -1.22 Total: -90.18 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -1.17 Total: -23.11 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.73 Total: -4.49 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -61.10 1.52 -59.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095706673.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.566 kcal (2) G-P(sol) polarization free energy of solvation -61.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds