Wall clock time and date at job start Mon Mar 30 2020 02:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.46875 * 2 1 4 4 C 1.53005 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46852 * 55.00196 * 4 3 2 6 6 N 1.46893 * 109.47525 * 295.00344 * 4 3 2 7 7 C 1.50703 * 109.47147 * 174.99620 * 4 3 2 8 8 C 1.34537 * 122.32279 * 79.98337 * 7 4 3 9 9 S 1.75799 * 110.14090 * 179.75616 * 8 7 4 10 10 C 1.75887 * 91.12860 * 0.34245 * 9 8 7 11 11 C 1.39915 * 125.40848 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00035 * 179.41814 * 11 10 9 13 13 C 1.40072 * 119.99890 * 359.69399 * 11 10 9 14 14 N 1.30874 * 119.99850 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99791 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46676 * 90.00576 * 15 13 11 17 17 H 1.48502 * 109.46977 * 209.99874 * 15 13 11 18 18 H 1.48494 * 109.47494 * 330.00602 * 15 13 11 19 19 C 1.36806 * 122.33107 * 260.00384 * 7 4 3 20 20 H 1.09000 * 109.47320 * 60.00324 * 1 2 3 21 21 H 1.09008 * 109.47151 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47532 * 299.99723 * 1 2 3 23 23 H 1.08998 * 109.47422 * 239.99800 * 2 1 3 24 24 H 1.09000 * 109.47320 * 119.99676 * 2 1 3 25 25 H 1.08995 * 109.47322 * 60.00231 * 3 2 1 26 26 H 1.08999 * 109.47687 * 299.99494 * 3 2 1 27 27 H 1.00907 * 110.99637 * 299.99899 * 6 4 3 28 28 H 1.00900 * 111.00029 * 63.95125 * 6 4 3 29 29 H 1.07996 * 124.92893 * 359.97438 * 8 7 4 30 30 H 0.96996 * 119.99606 * 179.97438 * 14 13 11 31 31 H 1.07998 * 122.89690 * 359.97438 * 19 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 7 4.0591 0.8574 1.2560 7 6 4.0723 2.8579 -0.1233 8 6 4.1252 3.6970 0.9270 9 16 4.7655 5.2555 0.4251 10 6 4.9296 4.6930 -1.2333 11 6 5.4182 5.4522 -2.3022 12 1 5.4905 5.0145 -3.2868 13 6 5.8189 6.7781 -2.0940 14 7 5.7368 7.3066 -0.8995 15 14 6.4718 7.7915 -3.5210 16 1 5.3453 8.4974 -4.1830 17 1 7.4503 8.7870 -3.0142 18 1 7.1385 6.8959 -4.5000 19 6 4.5058 3.3790 -1.3116 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.7353 1.3864 2.0519 28 1 3.7897 -0.1120 1.3323 29 1 3.8219 3.4482 1.9332 30 1 6.0146 8.2247 -0.7553 31 1 4.5162 2.8130 -2.2313 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104681002.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:18 Heat of formation + Delta-G solvation = -11.951155 kcal Electronic energy + Delta-G solvation = -13096.758480 eV Core-core repulsion = 10888.902287 eV Total energy + Delta-G solvation = -2207.856193 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.63112 -35.03443 -33.73486 -32.05739 -28.79772 -27.26897 -24.86791 -23.67457 -21.18983 -19.93596 -17.79820 -17.18698 -15.59934 -15.19373 -14.93959 -14.21767 -14.12468 -13.69173 -12.88197 -12.65350 -12.11742 -11.92284 -11.70953 -11.48010 -11.38474 -11.12771 -10.83727 -10.66863 -10.53201 -10.33598 -10.25392 -9.66076 -9.40921 -8.77084 -8.12538 -7.27805 -6.88818 -6.55121 -4.41945 2.70122 2.98053 3.03307 3.17644 3.75894 3.79931 4.14356 4.25581 5.02568 5.11810 5.13978 5.30106 5.34709 5.72358 5.84869 5.90218 5.99713 6.12425 6.26413 6.39321 6.62280 6.65748 6.87647 6.95072 7.34319 7.60728 7.74876 7.91818 8.02163 8.18294 8.31375 8.66648 8.69898 9.95641 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.047301 B = 0.006483 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.808057 B = 4317.809921 C = 4579.524181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.144 4.144 4 C 0.152 3.848 5 H 0.072 0.928 6 N -0.837 5.837 7 C -0.028 4.028 8 C -0.396 4.396 9 S 0.119 5.881 10 C 0.039 3.961 11 C -0.396 4.396 12 H 0.091 0.909 13 C 0.052 3.948 14 N -0.789 5.789 15 Si 0.932 3.068 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.260 1.260 19 C -0.350 4.350 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.337 0.663 28 H 0.326 0.674 29 H 0.113 0.887 30 H 0.294 0.706 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 -5.564 0.868 7.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.184 4.184 4 C 0.039 3.961 5 H 0.090 0.910 6 N -0.365 5.365 7 C -0.039 4.039 8 C -0.531 4.531 9 S 0.380 5.620 10 C -0.081 4.081 11 C -0.432 4.432 12 H 0.109 0.891 13 C -0.167 4.167 14 N -0.417 5.417 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.183 1.183 19 C -0.375 4.375 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.150 0.850 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.817 -3.892 1.502 5.654 hybrid contribution -1.073 -1.036 -1.053 1.826 sum -4.890 -4.928 0.449 6.956 Atomic orbital electron populations 1.21758 0.96192 1.00977 1.01820 1.21581 0.95657 0.97703 1.01407 1.22378 0.97885 0.95480 1.02672 1.20035 0.90459 0.93869 0.91762 0.91007 1.58931 1.67665 1.05528 1.04426 1.17850 0.99825 0.92827 0.93444 1.25067 1.24909 1.02682 1.00431 1.84413 1.64267 1.09924 1.03442 1.21739 0.96041 0.94809 0.95506 1.19106 1.32911 0.95077 0.96072 0.89147 1.26152 0.94505 0.98566 0.97499 1.68890 1.35140 1.15710 1.21957 0.85884 0.79145 0.79052 0.80357 1.19180 1.19894 1.18344 1.19493 1.24369 0.96409 0.97262 0.92724 0.93213 0.92974 0.92156 0.92652 0.92318 0.91427 0.85026 0.86204 0.86876 0.89384 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.15 0.37 -1.34 16 2 C -0.13 -1.61 5.70 -26.74 -0.15 -1.77 16 3 C -0.14 -2.35 4.84 -26.73 -0.13 -2.48 16 4 C 0.15 2.89 3.11 -68.86 -0.21 2.68 16 5 H 0.07 1.39 8.08 -51.92 -0.42 0.97 16 6 N -0.84 -14.22 9.03 -5.65 -0.05 -14.28 16 7 C -0.03 -0.66 4.84 -106.45 -0.51 -1.17 16 8 C -0.40 -9.60 10.42 29.42 0.31 -9.30 16 9 S 0.12 3.10 20.27 -107.50 -2.18 0.93 16 10 C 0.04 1.08 6.19 -38.94 -0.24 0.84 16 11 C -0.40 -10.51 9.29 -38.27 -0.36 -10.86 16 12 H 0.09 2.28 7.85 -52.49 -0.41 1.87 16 13 C 0.05 1.28 5.50 -17.27 -0.09 1.19 16 14 N -0.79 -19.89 10.65 55.56 0.59 -19.30 16 15 Si 0.93 18.28 29.56 -169.99 -5.03 13.25 16 16 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 C -0.35 -9.15 9.94 -40.08 -0.40 -9.55 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.65 6.87 -51.93 -0.36 0.30 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.34 5.58 7.71 -39.29 -0.30 5.28 16 28 H 0.33 4.55 7.55 -39.29 -0.30 4.26 16 29 H 0.11 2.53 7.16 -52.49 -0.38 2.15 16 30 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 31 H 0.10 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 271.01 15.07 4.08 4.08 Total: -1.00 -27.77 271.01 -8.26 -36.03 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -4.26 Total: 11.05 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: -1.43 Total: -31.76 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.54 Total: -33.57 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.18 Total: 0.93 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.77 -8.26 -36.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104681002.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.077 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds