Wall clock time and date at job start Mon Mar 30 2020 02:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.46875 * 2 1 4 4 C 1.53005 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46852 * 55.00196 * 4 3 2 6 6 N 1.46893 * 109.47525 * 295.00344 * 4 3 2 7 7 C 1.50703 * 109.47147 * 174.99620 * 4 3 2 8 8 C 1.34537 * 122.32279 * 79.98337 * 7 4 3 9 9 S 1.75799 * 110.14090 * 179.75616 * 8 7 4 10 10 C 1.75887 * 91.12860 * 0.34245 * 9 8 7 11 11 C 1.39915 * 125.40848 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00035 * 179.41814 * 11 10 9 13 13 C 1.40072 * 119.99890 * 359.69399 * 11 10 9 14 14 N 1.30874 * 119.99850 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99791 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46676 * 90.00576 * 15 13 11 17 17 H 1.48502 * 109.46977 * 209.99874 * 15 13 11 18 18 H 1.48494 * 109.47494 * 330.00602 * 15 13 11 19 19 C 1.36806 * 122.33107 * 260.00384 * 7 4 3 20 20 H 1.09000 * 109.47320 * 60.00324 * 1 2 3 21 21 H 1.09008 * 109.47151 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47532 * 299.99723 * 1 2 3 23 23 H 1.08998 * 109.47422 * 239.99800 * 2 1 3 24 24 H 1.09000 * 109.47320 * 119.99676 * 2 1 3 25 25 H 1.08995 * 109.47322 * 60.00231 * 3 2 1 26 26 H 1.08999 * 109.47687 * 299.99494 * 3 2 1 27 27 H 1.00907 * 110.99637 * 299.99899 * 6 4 3 28 28 H 1.00900 * 111.00029 * 63.95125 * 6 4 3 29 29 H 1.07996 * 124.92893 * 359.97438 * 8 7 4 30 30 H 0.96996 * 119.99606 * 179.97438 * 14 13 11 31 31 H 1.07998 * 122.89690 * 359.97438 * 19 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 7 4.0591 0.8574 1.2560 7 6 4.0723 2.8579 -0.1233 8 6 4.1252 3.6970 0.9270 9 16 4.7655 5.2555 0.4251 10 6 4.9296 4.6930 -1.2333 11 6 5.4182 5.4522 -2.3022 12 1 5.4905 5.0145 -3.2868 13 6 5.8189 6.7781 -2.0940 14 7 5.7368 7.3066 -0.8995 15 14 6.4718 7.7915 -3.5210 16 1 5.3453 8.4974 -4.1830 17 1 7.4503 8.7870 -3.0142 18 1 7.1385 6.8959 -4.5000 19 6 4.5058 3.3790 -1.3116 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.7353 1.3864 2.0519 28 1 3.7897 -0.1120 1.3323 29 1 3.8219 3.4482 1.9332 30 1 6.0146 8.2247 -0.7553 31 1 4.5162 2.8130 -2.2313 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104681002.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:17 Heat of formation + Delta-G solvation = -28.509533 kcal Electronic energy + Delta-G solvation = -13097.476505 eV Core-core repulsion = 10888.902287 eV Total energy + Delta-G solvation = -2208.574218 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.24470 -36.74292 -35.46859 -33.39982 -30.68535 -28.57304 -26.82654 -25.16333 -22.61319 -21.49576 -19.73639 -19.02875 -17.32727 -16.89834 -16.16558 -15.91405 -15.47391 -15.20345 -14.19928 -14.08611 -13.88042 -13.55508 -13.36811 -12.96667 -12.87374 -12.69896 -12.37568 -12.13747 -12.02070 -11.93989 -11.56117 -11.43721 -11.21253 -10.74301 -9.53412 -9.26037 -8.76294 -8.55975 -6.43541 0.85459 1.36949 1.51648 1.54367 1.76473 2.10284 2.28379 2.31710 3.12677 3.87937 3.96479 4.07153 4.17203 4.44558 4.64280 4.76326 4.84358 4.91746 5.01723 5.02732 5.12193 5.22487 5.30811 5.36227 5.42380 5.68199 5.95782 6.20459 6.29313 6.42346 6.68964 6.71157 6.77403 8.10547 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.047301 B = 0.006483 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.808057 B = 4317.809921 C = 4579.524181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.134 4.134 4 C 0.157 3.843 5 H 0.068 0.932 6 N -0.840 5.840 7 C -0.029 4.029 8 C -0.400 4.400 9 S 0.091 5.909 10 C 0.009 3.991 11 C -0.429 4.429 12 H 0.092 0.908 13 C 0.014 3.986 14 N -0.811 5.811 15 Si 1.009 2.991 16 H -0.258 1.258 17 H -0.261 1.261 18 H -0.256 1.256 19 C -0.378 4.378 20 H 0.048 0.952 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.341 0.659 28 H 0.346 0.654 29 H 0.132 0.868 30 H 0.305 0.695 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 -5.985 0.689 7.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.174 4.174 4 C 0.043 3.957 5 H 0.086 0.914 6 N -0.371 5.371 7 C -0.041 4.041 8 C -0.535 4.535 9 S 0.351 5.649 10 C -0.111 4.111 11 C -0.464 4.464 12 H 0.110 0.890 13 C -0.203 4.203 14 N -0.438 5.438 15 Si 0.828 3.172 16 H -0.182 1.182 17 H -0.185 1.185 18 H -0.180 1.180 19 C -0.404 4.404 20 H 0.068 0.932 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.154 0.846 28 H 0.161 0.839 29 H 0.150 0.850 30 H 0.118 0.882 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.064 -4.345 1.350 6.101 hybrid contribution -0.996 -0.908 -0.963 1.657 sum -5.060 -5.253 0.387 7.304 Atomic orbital electron populations 1.21746 0.94907 1.02283 1.01678 1.21530 0.96730 0.95030 1.02363 1.22245 0.95739 0.97925 1.01527 1.19916 0.92096 0.90973 0.92672 0.91414 1.58806 1.67896 1.06851 1.03577 1.18249 0.98316 0.95220 0.92268 1.25234 1.25099 1.01767 1.01442 1.84270 1.65482 1.11773 1.03385 1.22172 0.96807 0.95729 0.96409 1.19458 1.34238 0.96576 0.96106 0.88962 1.27161 0.93820 0.98886 1.00473 1.68951 1.34510 1.16588 1.23777 0.84763 0.78761 0.77234 0.76478 1.18235 1.18493 1.17993 1.19745 1.25824 0.96497 0.98287 0.93247 0.91177 0.92827 0.91811 0.91053 0.92699 0.93342 0.84596 0.83897 0.85003 0.88236 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.91 71.98 0.71 -2.31 16 2 C -0.12 -2.77 5.70 30.59 0.17 -2.60 16 3 C -0.13 -4.25 4.84 30.59 0.15 -4.10 16 4 C 0.16 5.85 3.11 44.17 0.14 5.99 16 5 H 0.07 2.57 8.08 -2.38 -0.02 2.55 16 6 N -0.84 -27.06 9.03 -171.79 -1.55 -28.61 16 7 C -0.03 -1.40 4.84 -21.05 -0.10 -1.50 16 8 C -0.40 -19.53 10.42 66.97 0.70 -18.83 16 9 S 0.09 4.86 20.27 -56.49 -1.14 3.71 16 10 C 0.01 0.50 6.19 22.69 0.14 0.64 16 11 C -0.43 -23.22 9.29 23.12 0.21 -23.01 16 12 H 0.09 4.78 7.85 -2.91 -0.02 4.75 16 13 C 0.01 0.67 5.50 85.28 0.47 1.14 16 14 N -0.81 -40.95 10.65 21.86 0.23 -40.71 16 15 Si 1.01 36.65 29.56 68.60 2.03 38.68 16 16 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 17 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 18 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 19 C -0.38 -20.32 9.94 21.94 0.22 -20.10 16 20 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.45 6.87 -2.39 -0.02 1.43 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.34 10.64 7.71 -89.69 -0.69 9.95 16 28 H 0.35 8.76 7.55 -89.69 -0.68 8.09 16 29 H 0.13 5.81 7.16 -2.91 -0.02 5.78 16 30 H 0.30 13.68 8.30 -92.71 -0.77 12.91 16 31 H 0.09 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -60.14 271.01 2.14 -58.01 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.24 Total: 33.60 kcal Atomic # 6 Polarization: -67.49 SS G_CDS: 2.81 Total: -64.68 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -1.32 Total: -69.32 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.14 Total: 3.71 kcal Total: -60.14 2.14 -58.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104681002.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.496 kcal (2) G-P(sol) polarization free energy of solvation -60.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds