Wall clock time and date at job start Mon Mar 30 2020 03:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35958 * 117.00092 * 2 1 4 4 C 1.38659 * 120.06389 * 0.02562 * 3 2 1 5 5 C 1.38180 * 119.97116 * 179.70300 * 4 3 2 6 6 C 1.38264 * 120.09320 * 0.55569 * 5 4 3 7 7 C 1.50700 * 119.93461 * 179.72610 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.71993 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72432 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 C 1.38254 * 120.12413 * 359.44221 * 6 5 4 18 18 C 1.38329 * 120.03175 * 0.28101 * 17 6 5 19 19 F 1.35103 * 120.04786 * 179.97438 * 18 17 6 20 20 H 1.09005 * 109.47467 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46749 * 299.99662 * 1 2 3 22 22 H 1.08999 * 109.47351 * 59.99837 * 1 2 3 23 23 H 1.08004 * 120.01598 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.95181 * 180.29622 * 5 4 3 25 25 H 1.09004 * 109.47210 * 149.72350 * 7 6 5 26 26 H 1.08994 * 109.47121 * 29.72320 * 7 6 5 27 27 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 28 28 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 29 29 H 1.08004 * 119.98396 * 180.25156 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3024 3.6777 0.0008 7 6 3.9850 5.0212 0.0014 8 7 4.2060 5.4571 -1.3797 9 6 4.8107 6.6602 -1.6294 10 1 5.1287 7.2855 -0.8083 11 6 5.0150 7.0759 -2.9380 12 7 4.6270 6.3139 -3.9387 13 14 5.8405 8.7165 -3.2787 14 1 7.2017 8.7185 -2.6851 15 1 5.9394 8.9257 -4.7456 16 1 5.0362 9.8099 -2.6764 17 6 4.0579 2.5199 0.0003 18 6 3.4333 1.2856 -0.0001 19 9 4.1713 0.1540 -0.0012 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 0.2137 2.3201 0.0005 24 1 1.3341 4.5115 0.0120 25 1 4.9431 4.9418 0.5151 26 1 3.3562 5.7480 0.5156 27 1 3.9201 4.8957 -2.1172 28 1 4.7701 6.6042 -4.8531 29 1 5.1363 2.5791 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258844752.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:43 Heat of formation + Delta-G solvation = -46.611026 kcal Electronic energy + Delta-G solvation = -14760.297143 eV Core-core repulsion = 11984.724810 eV Total energy + Delta-G solvation = -2775.572334 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.54415 -39.89614 -37.68117 -34.45637 -31.67718 -30.53120 -29.50845 -27.52426 -25.16276 -22.75524 -22.56803 -20.87625 -18.21548 -17.32960 -16.71062 -16.35566 -16.05787 -14.93798 -14.75649 -14.62517 -14.12772 -14.02046 -13.33407 -13.17832 -12.69285 -12.19636 -12.02391 -11.90592 -11.32106 -11.08843 -10.84562 -10.79927 -10.71131 -10.11059 -9.75867 -8.90840 -8.72021 -7.94553 -6.95587 -5.77147 -3.07344 1.34768 1.43402 3.16409 3.43983 3.48028 3.49399 3.76277 4.39728 4.60750 4.80759 4.95480 5.03964 5.14908 5.30621 5.38032 5.51983 5.56071 5.69276 6.06427 6.15293 6.20169 6.33706 6.43576 6.55444 6.82856 6.99355 7.36173 7.67797 8.40498 9.52017 10.07681 10.43422 11.45226 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.047623 B = 0.005609 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.804695 B = 4990.946057 C = 5137.079020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.083 3.917 4 C -0.184 4.184 5 C -0.074 4.074 6 C -0.083 4.083 7 C 0.190 3.810 8 N -0.728 5.728 9 C -0.244 4.244 10 H 0.072 0.928 11 C -0.012 4.012 12 N -0.932 5.932 13 Si 0.909 3.091 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.286 1.286 17 C -0.100 4.100 18 C 0.064 3.936 19 F -0.138 7.138 20 H 0.099 0.901 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.134 0.866 24 H 0.133 0.867 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.386 0.614 28 H 0.256 0.744 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.171 -10.028 9.085 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.038 3.962 4 C -0.203 4.203 5 C -0.093 4.093 6 C -0.083 4.083 7 C 0.063 3.937 8 N -0.372 5.372 9 C -0.375 4.375 10 H 0.090 0.910 11 C -0.208 4.208 12 N -0.580 5.580 13 Si 0.740 3.260 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.212 1.212 17 C -0.120 4.120 18 C 0.044 3.956 19 F -0.116 7.116 20 H 0.117 0.883 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.152 0.848 24 H 0.151 0.849 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.220 0.780 28 H 0.066 0.934 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.976 -10.098 9.095 15.757 hybrid contribution 0.194 0.625 -0.586 0.879 sum -7.781 -9.472 8.509 14.922 Atomic orbital electron populations 1.23057 0.78384 1.03820 1.01465 1.86098 1.21377 1.26176 1.89180 1.18936 0.90750 0.85386 1.01172 1.21077 0.99925 0.91519 1.07760 1.20996 0.94246 0.97117 0.96948 1.20087 0.93351 0.95871 0.99024 1.19641 0.96300 0.88335 0.89436 1.42362 1.72362 1.22044 1.00459 1.19199 1.31134 0.95305 0.91850 0.91043 1.24768 1.01766 0.98763 0.95541 1.69667 1.52297 1.37750 0.98247 0.86238 0.79330 0.83530 0.76885 1.21195 1.21678 1.21224 1.21000 1.01306 0.89552 1.00097 1.16953 0.85836 0.82895 1.09880 1.91467 1.76531 1.49168 1.94467 0.88311 0.92640 0.92475 0.84829 0.84911 0.95167 0.95075 0.78031 0.93390 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 15 2 O -0.31 -4.44 10.36 -19.61 -0.20 -4.64 15 3 C 0.08 1.28 6.69 -39.18 -0.26 1.02 15 4 C -0.18 -2.54 9.04 -39.45 -0.36 -2.90 15 5 C -0.07 -1.14 9.69 -39.59 -0.38 -1.53 15 6 C -0.08 -1.44 5.25 -104.61 -0.55 -1.99 15 7 C 0.19 3.81 6.38 -5.19 -0.03 3.78 15 8 N -0.73 -18.53 5.59 -61.09 -0.34 -18.87 15 9 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 15 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 15 11 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 15 12 N -0.93 -28.33 13.06 55.49 0.72 -27.61 15 13 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 15 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 17 C -0.10 -1.70 9.67 -39.54 -0.38 -2.08 15 18 C 0.06 1.08 7.31 -39.30 -0.29 0.79 15 19 F -0.14 -2.37 17.11 2.25 0.04 -2.33 15 20 H 0.10 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.05 0.42 7.66 -51.93 -0.40 0.03 15 22 H 0.06 0.48 7.66 -51.93 -0.40 0.08 15 23 H 0.13 1.42 6.30 -52.48 -0.33 1.09 15 24 H 0.13 1.88 8.06 -52.49 -0.42 1.46 15 25 H 0.03 0.60 8.08 -51.93 -0.42 0.18 15 26 H 0.03 0.61 8.08 -51.93 -0.42 0.19 15 27 H 0.39 10.50 7.66 -40.82 -0.31 10.18 15 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 29 H 0.14 2.31 8.06 -52.48 -0.42 1.89 15 LS Contribution 262.19 15.07 3.95 3.95 Total: -1.00 -31.52 262.19 -5.46 -36.98 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.09 Total: 4.28 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.51 Total: -9.07 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.38 Total: -46.48 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.20 Total: -4.64 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.52 -5.46 -36.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258844752.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.631 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds