Wall clock time and date at job start Mon Mar 30 2020 03:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35958 * 117.00092 * 2 1 4 4 C 1.38659 * 120.06389 * 0.02562 * 3 2 1 5 5 C 1.38180 * 119.97116 * 179.70300 * 4 3 2 6 6 C 1.38264 * 120.09320 * 0.55569 * 5 4 3 7 7 C 1.50700 * 119.93461 * 179.72610 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.71993 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72432 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 C 1.38254 * 120.12413 * 359.44221 * 6 5 4 18 18 C 1.38329 * 120.03175 * 0.28101 * 17 6 5 19 19 F 1.35103 * 120.04786 * 179.97438 * 18 17 6 20 20 H 1.09005 * 109.47467 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46749 * 299.99662 * 1 2 3 22 22 H 1.08999 * 109.47351 * 59.99837 * 1 2 3 23 23 H 1.08004 * 120.01598 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.95181 * 180.29622 * 5 4 3 25 25 H 1.09004 * 109.47210 * 149.72350 * 7 6 5 26 26 H 1.08994 * 109.47121 * 29.72320 * 7 6 5 27 27 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 28 28 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 29 29 H 1.08004 * 119.98396 * 180.25156 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3024 3.6777 0.0008 7 6 3.9850 5.0212 0.0014 8 7 4.2060 5.4571 -1.3797 9 6 4.8107 6.6602 -1.6294 10 1 5.1287 7.2855 -0.8083 11 6 5.0150 7.0759 -2.9380 12 7 4.6270 6.3139 -3.9387 13 14 5.8405 8.7165 -3.2787 14 1 7.2017 8.7185 -2.6851 15 1 5.9394 8.9257 -4.7456 16 1 5.0362 9.8099 -2.6764 17 6 4.0579 2.5199 0.0003 18 6 3.4333 1.2856 -0.0001 19 9 4.1713 0.1540 -0.0012 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 0.2137 2.3201 0.0005 24 1 1.3341 4.5115 0.0120 25 1 4.9431 4.9418 0.5151 26 1 3.3562 5.7480 0.5156 27 1 3.9201 4.8957 -2.1172 28 1 4.7701 6.6042 -4.8531 29 1 5.1363 2.5791 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258844752.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:43 Heat of formation + Delta-G solvation = -67.126998 kcal Electronic energy + Delta-G solvation = -14761.186782 eV Core-core repulsion = 11984.724810 eV Total energy + Delta-G solvation = -2776.461973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.84690 -41.02856 -38.88756 -36.29302 -33.50062 -31.74195 -31.06086 -28.52336 -26.79704 -24.56813 -23.76395 -22.24954 -19.44665 -19.17726 -17.90973 -17.73544 -17.15647 -16.65018 -16.04602 -15.83861 -15.61059 -15.21123 -15.19061 -14.65541 -14.22336 -13.44337 -13.37557 -13.04386 -12.94168 -12.69770 -12.38267 -12.14536 -12.07713 -11.96339 -11.74576 -10.95648 -9.94650 -9.17508 -9.01466 -7.93696 -5.24068 0.11922 0.18960 1.49361 1.52618 1.58675 2.18937 2.47233 2.63184 3.19318 3.39705 3.69686 3.80737 4.08213 4.23746 4.28613 4.40180 4.41627 4.51126 4.71171 4.76921 4.88802 4.96084 5.09821 5.15569 5.50170 5.62028 5.63601 6.26764 6.28908 7.33679 8.06545 8.31378 9.29424 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.047623 B = 0.005609 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.804695 B = 4990.946057 C = 5137.079020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.089 3.911 4 C -0.173 4.173 5 C -0.072 4.072 6 C -0.102 4.102 7 C 0.191 3.809 8 N -0.741 5.741 9 C -0.248 4.248 10 H 0.081 0.919 11 C -0.075 4.075 12 N -0.970 5.970 13 Si 0.977 3.023 14 H -0.278 1.278 15 H -0.297 1.297 16 H -0.275 1.275 17 C -0.106 4.106 18 C 0.041 3.959 19 F -0.146 7.146 20 H 0.122 0.878 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.172 0.828 24 H 0.147 0.853 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.373 0.627 28 H 0.251 0.749 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.543 -9.901 9.949 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.246 6.246 3 C 0.043 3.957 4 C -0.191 4.191 5 C -0.090 4.090 6 C -0.102 4.102 7 C 0.066 3.934 8 N -0.384 5.384 9 C -0.379 4.379 10 H 0.099 0.901 11 C -0.268 4.268 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.204 1.204 15 H -0.223 1.223 16 H -0.201 1.201 17 C -0.125 4.125 18 C 0.021 3.979 19 F -0.125 7.125 20 H 0.140 0.860 21 H 0.092 0.908 22 H 0.085 0.915 23 H 0.189 0.811 24 H 0.165 0.835 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.205 0.795 28 H 0.060 0.940 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.358 -9.979 10.016 16.955 hybrid contribution 0.523 0.467 -0.770 1.041 sum -8.835 -9.512 9.246 15.938 Atomic orbital electron populations 1.23466 0.75595 1.06014 1.02821 1.86095 1.24250 1.25566 1.88738 1.19069 0.90364 0.86532 0.99762 1.21392 1.01646 0.90088 1.05960 1.21198 0.93432 0.98483 0.95910 1.19873 0.94345 0.94480 1.01541 1.19708 0.96862 0.90098 0.86753 1.42573 1.72183 1.21331 1.02285 1.19653 1.30059 0.96052 0.92183 0.90132 1.25614 1.03231 1.02417 0.95499 1.69834 1.54271 1.39664 0.98291 0.85169 0.78570 0.79569 0.76172 1.20394 1.22324 1.20079 1.20970 1.01287 0.89865 1.00399 1.17134 0.86841 0.82542 1.11383 1.91436 1.76891 1.49445 1.94684 0.85961 0.90781 0.91456 0.81080 0.83523 0.94981 0.93913 0.79493 0.93998 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 15 2 O -0.33 -8.64 10.36 -93.08 -0.96 -9.61 15 3 C 0.09 2.58 6.69 22.53 0.15 2.73 15 4 C -0.17 -4.28 9.04 22.36 0.20 -4.08 15 5 C -0.07 -2.07 9.69 22.26 0.22 -1.85 15 6 C -0.10 -3.49 5.25 -19.85 -0.10 -3.59 15 7 C 0.19 7.62 6.38 85.63 0.55 8.16 15 8 N -0.74 -37.86 5.59 -347.18 -1.94 -39.81 15 9 C -0.25 -13.79 9.99 84.03 0.84 -12.95 15 10 H 0.08 4.23 7.83 -2.91 -0.02 4.21 15 11 C -0.08 -4.33 5.50 84.86 0.47 -3.87 15 12 N -0.97 -59.82 13.06 21.65 0.28 -59.53 15 13 Si 0.98 45.93 29.55 68.60 2.03 47.95 15 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 15 15 H -0.30 -14.13 7.11 99.48 0.71 -13.42 15 16 H -0.27 -12.32 7.11 99.48 0.71 -11.62 15 17 C -0.11 -3.61 9.67 22.30 0.22 -3.40 15 18 C 0.04 1.35 7.31 22.45 0.16 1.52 15 19 F -0.15 -5.06 17.11 44.97 0.77 -4.29 15 20 H 0.12 1.21 8.14 -2.38 -0.02 1.19 15 21 H 0.07 0.83 7.66 -2.38 -0.02 0.81 15 22 H 0.07 0.87 7.66 -2.39 -0.02 0.85 15 23 H 0.17 2.89 6.30 -2.91 -0.02 2.87 15 24 H 0.15 3.79 8.06 -2.91 -0.02 3.77 15 25 H 0.03 1.27 8.08 -2.38 -0.02 1.25 15 26 H 0.04 1.61 8.08 -2.39 -0.02 1.59 15 27 H 0.37 20.64 7.66 -92.71 -0.71 19.93 15 28 H 0.25 15.04 8.31 -92.71 -0.77 14.27 15 29 H 0.14 4.65 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -67.28 262.19 4.44 -62.84 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.46 Total: 18.45 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 3.81 Total: -16.00 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -1.66 Total: -99.34 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.96 Total: -9.61 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.77 Total: -4.29 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -67.28 4.44 -62.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258844752.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.292 kcal (2) G-P(sol) polarization free energy of solvation -67.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds