Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31778 * 122.74746 * 2 1 4 4 C 1.29025 * 117.12435 * 179.97438 * 3 2 1 5 5 C 1.50708 * 124.91453 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47141 * 60.02780 * 5 4 3 7 7 C 1.52992 * 109.47025 * 300.02387 * 5 4 3 8 8 S 1.70973 * 110.16681 * 0.23239 * 4 3 2 9 9 C 1.33635 * 122.75145 * 179.97438 * 2 1 3 10 10 C 1.50697 * 126.03632 * 0.02562 * 9 2 1 11 11 C 1.50702 * 109.47577 * 89.99735 * 10 9 2 12 12 H 1.08002 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00365 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00108 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99728 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47147 * 89.99883 * 15 13 11 17 17 H 1.48504 * 109.47101 * 209.99826 * 15 13 11 18 18 H 1.48505 * 109.47606 * 329.99958 * 15 13 11 19 19 H 1.09000 * 109.47114 * 90.02114 * 1 2 3 20 20 H 1.08998 * 109.46947 * 210.01960 * 1 2 3 21 21 H 1.08994 * 109.47149 * 330.02417 * 1 2 3 22 22 H 1.09002 * 109.46828 * 180.02562 * 5 4 3 23 23 H 1.09002 * 109.47153 * 299.99670 * 6 5 4 24 24 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 25 25 H 1.09004 * 109.47261 * 59.99842 * 6 5 4 26 26 H 1.09002 * 109.47103 * 60.00431 * 7 5 4 27 27 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 28 28 H 1.08996 * 109.47747 * 300.00019 * 7 5 4 29 29 H 1.09006 * 109.46837 * 209.99713 * 10 9 2 30 30 H 1.08997 * 109.47615 * 329.99504 * 10 9 2 31 31 H 0.96998 * 120.00051 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 0.0005 5 6 4.4834 2.1273 0.0001 6 6 4.2668 2.9841 1.2490 7 6 4.2668 2.9830 -1.2495 8 16 3.9332 -0.6730 -0.0054 9 6 2.2300 -1.1239 0.0005 10 6 1.6847 -2.5288 0.0006 11 6 1.5034 -2.9974 -1.4202 12 1 1.7580 -2.3435 -2.2412 13 6 1.0135 -4.2614 -1.6720 14 7 0.8558 -4.6706 -2.9119 15 14 0.5752 -5.3932 -0.2521 16 1 -0.8464 -5.1872 0.1245 17 1 0.7785 -6.8055 -0.6638 18 1 1.4450 -5.0868 0.9120 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 -0.8898 0.5141 21 1 -0.3633 0.8901 0.5134 22 1 5.5006 1.7354 0.0002 23 1 3.2497 3.3759 1.2488 24 1 4.9756 3.8122 1.2488 25 1 4.4212 2.3743 2.1392 26 1 3.2496 3.3749 -1.2496 27 1 4.9755 3.8112 -1.2501 28 1 4.4211 2.3727 -2.1392 29 1 2.3828 -3.1894 0.5148 30 1 0.7234 -2.5455 0.5141 31 1 0.5108 -5.5596 -3.0891 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259140872.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = 15.014008 kcal Electronic energy + Delta-G solvation = -13216.278487 eV Core-core repulsion = 11009.591592 eV Total energy + Delta-G solvation = -2206.686895 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.39465 -35.58867 -33.35741 -31.38325 -29.26260 -27.09125 -25.98916 -24.58924 -22.10003 -20.50184 -17.82309 -17.16793 -16.90012 -15.13313 -14.55371 -14.33787 -14.00324 -13.34024 -13.00966 -12.76453 -12.50503 -12.22152 -12.15013 -11.75332 -11.50283 -11.44388 -11.07876 -10.93143 -10.84567 -10.57372 -10.30137 -10.15278 -9.51829 -8.97296 -8.65637 -8.48545 -7.78681 -6.15098 -4.15697 1.44344 2.00172 2.45573 3.22727 3.31099 3.32478 3.44585 4.33599 4.46713 4.99661 5.16846 5.18996 5.20548 5.66068 5.67546 5.87014 5.89196 5.91321 5.94665 6.09948 6.22553 6.27997 6.32104 6.38075 6.49959 6.79651 7.01404 7.07905 7.54717 8.37115 8.41613 8.88568 9.43400 10.97617 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.045174 B = 0.007237 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.671047 B = 3868.249052 C = 3951.025820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.025 3.975 3 N -0.459 5.459 4 C 0.017 3.983 5 C -0.008 4.008 6 C -0.137 4.137 7 C -0.138 4.138 8 S 0.088 5.912 9 C -0.140 4.140 10 C 0.052 3.948 11 C -0.515 4.515 12 H 0.074 0.926 13 C 0.073 3.927 14 N -0.895 5.895 15 Si 0.874 3.126 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.265 1.265 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.060 0.940 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.039 0.961 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 11.153 7.454 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 N -0.174 5.174 4 C -0.261 4.261 5 C -0.031 4.031 6 C -0.195 4.195 7 C -0.197 4.197 8 S 0.344 5.656 9 C -0.261 4.261 10 C 0.013 3.987 11 C -0.553 4.553 12 H 0.092 0.908 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.701 3.299 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.189 1.189 19 H 0.090 0.910 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.100 0.900 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.262 10.976 7.333 14.610 hybrid contribution -1.129 -0.814 0.477 1.472 sum 5.132 10.161 7.810 13.805 Atomic orbital electron populations 1.20183 0.87523 1.01858 1.02733 1.19984 0.97931 0.86068 1.06453 1.65895 1.04453 1.32016 1.14987 1.26554 0.94327 0.97477 1.07769 1.19655 0.95048 0.91302 0.97051 1.21772 1.02564 0.98939 0.96257 1.21780 1.02552 0.98968 0.96388 1.83779 1.09718 1.02274 1.69791 1.26055 0.93064 1.02114 1.04884 1.18335 0.95825 0.85377 0.99198 1.20858 1.44283 1.00261 0.89945 0.90773 1.24947 0.94821 0.97589 0.95552 1.69885 1.45431 1.19303 1.18688 0.86856 0.79486 0.80396 0.83151 1.19894 1.21002 1.18931 0.90966 0.90881 0.92148 0.89966 0.91667 0.92262 0.92776 0.91649 0.92268 0.92568 0.95177 0.94292 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.06 36.01 0.36 -0.79 16 2 C 0.02 0.51 6.74 -84.23 -0.57 -0.06 16 3 N -0.46 -8.88 10.51 -8.06 -0.08 -8.96 16 4 C 0.02 0.29 5.91 -13.45 -0.08 0.22 16 5 C -0.01 -0.11 3.35 -91.77 -0.31 -0.42 16 6 C -0.14 -1.56 9.17 37.16 0.34 -1.22 16 7 C -0.14 -1.68 9.17 37.15 0.34 -1.34 16 8 S 0.09 1.65 23.17 -107.50 -2.49 -0.84 16 9 C -0.14 -3.06 5.78 -35.92 -0.21 -3.27 16 10 C 0.05 1.25 4.26 -29.04 -0.12 1.12 16 11 C -0.52 -14.44 9.65 -34.44 -0.33 -14.77 16 12 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 13 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 14 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 15 Si 0.87 20.87 27.47 -169.99 -4.67 16.21 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 19 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 20 H 0.07 1.30 6.72 -51.93 -0.35 0.95 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 30 H 0.04 0.90 6.19 -51.93 -0.32 0.57 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 275.07 15.07 4.15 4.15 Total: -1.00 -30.35 275.07 -7.43 -37.78 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -4.43 Total: -3.54 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -0.67 Total: -18.55 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.69 Total: -35.20 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.49 Total: -0.84 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.35 -7.43 -37.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259140872.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.793 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds