Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31778 * 122.74746 * 2 1 4 4 C 1.29025 * 117.12435 * 179.97438 * 3 2 1 5 5 C 1.50708 * 124.91453 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47141 * 60.02780 * 5 4 3 7 7 C 1.52992 * 109.47025 * 300.02387 * 5 4 3 8 8 S 1.70973 * 110.16681 * 0.23239 * 4 3 2 9 9 C 1.33635 * 122.75145 * 179.97438 * 2 1 3 10 10 C 1.50697 * 126.03632 * 0.02562 * 9 2 1 11 11 C 1.50702 * 109.47577 * 89.99735 * 10 9 2 12 12 H 1.08002 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00365 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00108 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99728 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47147 * 89.99883 * 15 13 11 17 17 H 1.48504 * 109.47101 * 209.99826 * 15 13 11 18 18 H 1.48505 * 109.47606 * 329.99958 * 15 13 11 19 19 H 1.09000 * 109.47114 * 90.02114 * 1 2 3 20 20 H 1.08998 * 109.46947 * 210.01960 * 1 2 3 21 21 H 1.08994 * 109.47149 * 330.02417 * 1 2 3 22 22 H 1.09002 * 109.46828 * 180.02562 * 5 4 3 23 23 H 1.09002 * 109.47153 * 299.99670 * 6 5 4 24 24 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 25 25 H 1.09004 * 109.47261 * 59.99842 * 6 5 4 26 26 H 1.09002 * 109.47103 * 60.00431 * 7 5 4 27 27 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 28 28 H 1.08996 * 109.47747 * 300.00019 * 7 5 4 29 29 H 1.09006 * 109.46837 * 209.99713 * 10 9 2 30 30 H 1.08997 * 109.47615 * 329.99504 * 10 9 2 31 31 H 0.96998 * 120.00051 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 0.0005 5 6 4.4834 2.1273 0.0001 6 6 4.2668 2.9841 1.2490 7 6 4.2668 2.9830 -1.2495 8 16 3.9332 -0.6730 -0.0054 9 6 2.2300 -1.1239 0.0005 10 6 1.6847 -2.5288 0.0006 11 6 1.5034 -2.9974 -1.4202 12 1 1.7580 -2.3435 -2.2412 13 6 1.0135 -4.2614 -1.6720 14 7 0.8558 -4.6706 -2.9119 15 14 0.5752 -5.3932 -0.2521 16 1 -0.8464 -5.1872 0.1245 17 1 0.7785 -6.8055 -0.6638 18 1 1.4450 -5.0868 0.9120 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 -0.8898 0.5141 21 1 -0.3633 0.8901 0.5134 22 1 5.5006 1.7354 0.0002 23 1 3.2497 3.3759 1.2488 24 1 4.9756 3.8122 1.2488 25 1 4.4212 2.3743 2.1392 26 1 3.2496 3.3749 -1.2496 27 1 4.9755 3.8112 -1.2501 28 1 4.4211 2.3727 -2.1392 29 1 2.3828 -3.1894 0.5148 30 1 0.7234 -2.5455 0.5141 31 1 0.5108 -5.5596 -3.0891 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259140872.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = -3.465331 kcal Electronic energy + Delta-G solvation = -13217.079812 eV Core-core repulsion = 11009.591592 eV Total energy + Delta-G solvation = -2207.488220 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.88458 -36.83227 -35.27940 -33.16848 -30.91159 -28.01837 -27.74081 -25.96856 -23.98900 -21.76586 -19.35536 -19.05438 -18.61807 -16.52919 -16.30097 -15.83439 -15.29626 -14.87155 -14.52340 -14.20859 -14.15533 -13.91318 -13.26535 -13.13163 -12.93349 -12.78052 -12.56934 -12.31646 -12.10881 -12.02840 -11.89799 -11.82779 -11.68244 -10.82140 -10.45771 -10.02726 -9.36376 -8.33325 -6.40107 -0.08018 0.51425 0.93109 1.35651 1.37413 1.48468 1.91004 2.32156 3.00859 3.17300 3.91040 4.08942 4.19595 4.30564 4.36557 4.56373 4.71284 4.79171 4.83377 4.86476 4.93170 4.97111 5.01840 5.11523 5.27904 5.34507 5.36595 5.45989 5.55826 6.18770 6.63636 6.88170 7.23131 8.83208 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.045174 B = 0.007237 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.671047 B = 3868.249052 C = 3951.025820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.025 3.975 3 N -0.478 5.478 4 C 0.039 3.961 5 C -0.014 4.014 6 C -0.131 4.131 7 C -0.135 4.135 8 S 0.097 5.903 9 C -0.192 4.192 10 C 0.062 3.938 11 C -0.520 4.520 12 H 0.024 0.976 13 C 0.014 3.986 14 N -0.945 5.945 15 Si 0.947 3.053 16 H -0.259 1.259 17 H -0.281 1.281 18 H -0.246 1.246 19 H 0.062 0.938 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.104 0.896 23 H 0.051 0.949 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.043 0.957 29 H 0.032 0.968 30 H 0.049 0.951 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 12.219 9.406 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 N -0.193 5.193 4 C -0.240 4.240 5 C -0.036 4.036 6 C -0.190 4.190 7 C -0.194 4.194 8 S 0.354 5.646 9 C -0.313 4.313 10 C 0.023 3.977 11 C -0.558 4.558 12 H 0.043 0.957 13 C -0.184 4.184 14 N -0.585 5.585 15 Si 0.769 3.231 16 H -0.184 1.184 17 H -0.207 1.207 18 H -0.169 1.169 19 H 0.081 0.919 20 H 0.094 0.906 21 H 0.102 0.898 22 H 0.123 0.877 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.076 12.048 9.294 16.781 hybrid contribution -1.287 -0.981 -0.219 1.633 sum 5.789 11.067 9.075 15.439 Atomic orbital electron populations 1.20233 0.86467 1.03170 1.02437 1.20375 0.99050 0.86204 1.04778 1.66005 1.05197 1.31292 1.16768 1.27519 0.94556 0.97966 1.03944 1.20018 0.94827 0.90259 0.98535 1.21750 1.02745 0.99495 0.94984 1.21774 1.02752 0.99617 0.95220 1.83618 1.07895 1.03350 1.69701 1.25921 0.95126 1.01510 1.08721 1.18081 0.96522 0.86802 0.96296 1.21006 1.43947 0.99816 0.91076 0.95746 1.25917 0.94547 0.99373 0.98550 1.70044 1.46916 1.20113 1.21401 0.85711 0.80080 0.77622 0.79675 1.18403 1.20692 1.16941 0.91938 0.90604 0.89794 0.87747 0.92991 0.89012 0.92841 0.93063 0.88785 0.93758 0.94963 0.93274 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.30 10.06 71.24 0.72 -1.59 16 2 C 0.03 1.04 6.74 41.52 0.28 1.32 16 3 N -0.48 -18.07 10.51 -179.40 -1.89 -19.95 16 4 C 0.04 1.29 5.91 88.52 0.52 1.82 16 5 C -0.01 -0.33 3.35 -11.54 -0.04 -0.37 16 6 C -0.13 -2.56 9.17 71.98 0.66 -1.90 16 7 C -0.13 -2.94 9.17 71.98 0.66 -2.28 16 8 S 0.10 3.57 23.17 -56.49 -1.31 2.26 16 9 C -0.19 -8.41 5.78 24.64 0.14 -8.27 16 10 C 0.06 2.98 4.26 29.10 0.12 3.10 16 11 C -0.52 -30.05 9.65 25.60 0.25 -29.80 16 12 H 0.02 1.60 7.98 -2.91 -0.02 1.57 16 13 C 0.01 0.81 5.47 84.65 0.46 1.27 16 14 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 15 Si 0.95 42.85 27.47 68.60 1.88 44.73 16 16 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.25 -10.31 6.54 99.48 0.65 -9.66 16 19 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 20 H 0.08 2.65 6.72 -2.39 -0.02 2.64 16 21 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 22 H 0.10 2.03 8.12 -2.39 -0.02 2.01 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.03 1.50 7.20 -2.38 -0.02 1.49 16 30 H 0.05 2.22 6.19 -2.39 -0.01 2.20 16 31 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -67.12 275.07 3.81 -63.31 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.05 Total: 4.73 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 3.78 Total: -36.69 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.59 Total: -78.35 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.73 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.31 Total: 2.26 kcal Total: -67.12 3.81 -63.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259140872.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.843 kcal (2) G-P(sol) polarization free energy of solvation -67.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds