Wall clock time and date at job start Mon Mar 30 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46894 * 111.00377 * 2 1 4 4 H 1.08997 * 109.47371 * 34.59081 * 3 2 1 5 5 C 1.53003 * 109.47377 * 154.59075 * 3 2 1 6 6 C 1.50701 * 109.46846 * 295.00257 * 5 3 2 7 7 H 1.07994 * 120.00257 * 359.97438 * 6 5 3 8 8 C 1.37882 * 119.99650 * 180.02562 * 6 5 3 9 9 N 1.31516 * 120.00159 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99789 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47079 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46913 * 119.99594 * 10 8 6 13 13 H 1.48500 * 109.47150 * 239.99685 * 10 8 6 14 14 C 1.50703 * 109.47198 * 274.59366 * 3 2 1 15 15 S 1.75894 * 125.19915 * 314.36210 * 14 3 2 16 16 C 1.75882 * 90.96582 * 180.18220 * 15 14 3 17 17 C 1.33392 * 109.59877 * 359.83203 * 16 15 14 18 18 C 1.33381 * 125.20848 * 134.22800 * 14 3 2 19 19 C 1.50702 * 122.53640 * 0.02562 * 18 14 3 20 20 H 1.08997 * 109.47483 * 184.66785 * 1 2 3 21 21 H 1.09007 * 109.47033 * 304.66952 * 1 2 3 22 22 H 1.09000 * 109.47109 * 64.66167 * 1 2 3 23 23 H 1.00906 * 110.99632 * 236.04350 * 2 1 3 24 24 H 1.09001 * 109.47048 * 55.00282 * 5 3 2 25 25 H 1.08997 * 109.46907 * 174.99898 * 5 3 2 26 26 H 0.97000 * 120.00258 * 180.02562 * 9 8 6 27 27 H 1.08005 * 125.20230 * 179.79149 * 16 15 14 28 28 H 1.07994 * 122.54414 * 179.97438 * 17 16 15 29 29 H 1.09004 * 109.47253 * 269.73574 * 19 18 14 30 30 H 1.08995 * 109.47542 * 149.73500 * 19 18 14 31 31 H 1.09000 * 109.47300 * 29.73879 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3359 2.0138 0.5834 5 6 3.3947 1.3805 0.6189 6 6 3.3041 0.9882 2.0712 7 1 2.3445 0.7560 2.5090 8 6 4.4462 0.9267 2.8412 9 7 5.6147 1.2100 2.3082 10 14 4.3338 0.4411 4.6414 11 1 2.9163 0.1750 4.9948 12 1 5.1410 -0.7833 4.8751 13 1 4.8549 1.5461 5.4856 14 6 2.0693 1.8811 -1.4163 15 16 2.7105 0.9820 -2.7853 16 6 2.3796 2.3310 -3.8643 17 6 1.8299 3.3315 -3.1743 18 6 1.6561 3.0820 -1.8238 19 6 1.0516 4.0932 -0.8841 20 1 -0.3634 -1.0242 0.0836 21 1 -0.3633 0.5846 0.8453 22 1 -0.3633 0.4398 -0.9288 23 1 1.8305 -0.5262 -0.7814 24 1 4.0307 0.6708 0.0898 25 1 3.8209 2.3804 0.5386 26 1 6.4182 1.1664 2.8497 27 1 2.5900 2.3471 -4.9236 28 1 1.5426 4.2654 -3.6342 29 1 -0.0290 3.9552 -0.8479 30 1 1.2777 5.0990 -1.2381 31 1 1.4689 3.9570 0.1136 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259405945.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:21 Heat of formation + Delta-G solvation = 22.965482 kcal Electronic energy + Delta-G solvation = -13474.349715 eV Core-core repulsion = 11268.007622 eV Total energy + Delta-G solvation = -2206.342094 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.40261 -35.85048 -32.70460 -30.89119 -29.48448 -27.10651 -24.88216 -23.35048 -22.41026 -20.35903 -18.26503 -16.96438 -15.99713 -15.11227 -14.58612 -14.23478 -14.00246 -13.63536 -13.09909 -12.82732 -12.41207 -12.06136 -11.74852 -11.66738 -11.57019 -11.41392 -10.95965 -10.74119 -10.52289 -10.47222 -10.05102 -9.63671 -9.01238 -8.27128 -8.14214 -7.95857 -7.75946 -5.88284 -3.86970 1.37227 2.00143 2.38455 3.02473 3.38874 3.46135 3.51337 4.56308 4.94066 5.18383 5.29482 5.48941 5.65591 5.70708 5.77808 5.83038 5.90737 5.96542 6.12068 6.25814 6.30130 6.38160 6.78240 6.81774 6.85571 7.48287 7.64848 7.92957 7.99546 8.12324 8.54693 9.17896 9.74309 11.23565 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.008004 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.966230 B = 3497.390012 C = 3611.928685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.663 5.663 3 C 0.156 3.844 4 H 0.086 0.914 5 C 0.040 3.960 6 C -0.491 4.491 7 H 0.060 0.940 8 C 0.051 3.949 9 N -0.901 5.901 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.287 1.287 14 C -0.174 4.174 15 S 0.090 5.910 16 C -0.233 4.233 17 C -0.124 4.124 18 C -0.127 4.127 19 C -0.092 4.092 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.011 0.989 23 H 0.331 0.669 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.257 0.743 27 H 0.157 0.843 28 H 0.132 0.868 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 2.375 -10.017 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.291 5.291 3 C 0.045 3.955 4 H 0.104 0.896 5 C 0.002 3.998 6 C -0.529 4.529 7 H 0.079 0.921 8 C -0.149 4.149 9 N -0.541 5.541 10 Si 0.720 3.280 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.214 1.214 14 C -0.294 4.294 15 S 0.355 5.645 16 C -0.369 4.369 17 C -0.155 4.155 18 C -0.138 4.138 19 C -0.151 4.151 20 H 0.078 0.922 21 H 0.081 0.919 22 H 0.029 0.971 23 H 0.149 0.851 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.175 0.825 28 H 0.150 0.850 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.016 0.834 -9.489 12.450 hybrid contribution -0.609 1.435 0.015 1.560 sum -8.625 2.270 -9.474 13.012 Atomic orbital electron populations 1.22213 0.89308 1.01152 0.99413 1.60580 1.06100 1.13608 1.48854 1.20729 1.01448 0.87748 0.85619 0.89572 1.19146 0.87687 0.97231 0.95719 1.21121 0.93342 1.44242 0.94240 0.92131 1.25003 0.95535 0.95991 0.98324 1.69983 0.97943 1.50265 1.35950 0.86543 0.77987 0.77942 0.85542 1.19789 1.21241 1.21372 1.25935 1.03840 0.98449 1.01132 1.84165 1.62552 1.18563 0.99249 1.25439 1.09893 0.98437 1.03092 1.20002 1.02208 0.99829 0.93479 1.18814 1.04524 0.95970 0.94533 1.20489 0.99683 0.96284 0.98656 0.92164 0.91890 0.97081 0.85147 0.96198 0.96117 0.93309 0.82518 0.85007 0.92015 0.92001 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.53 60.06 0.63 1.10 16 2 N -0.66 -12.95 6.31 -115.25 -0.73 -13.68 16 3 C 0.16 3.24 2.07 -68.86 -0.14 3.10 16 4 H 0.09 1.78 6.19 -51.93 -0.32 1.46 16 5 C 0.04 1.03 4.64 -27.88 -0.13 0.90 16 6 C -0.49 -13.87 8.84 -34.44 -0.30 -14.17 16 7 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 8 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 9 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 10 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 C -0.17 -3.21 5.23 -36.00 -0.19 -3.39 16 15 S 0.09 1.48 22.21 -107.50 -2.39 -0.91 16 16 C -0.23 -3.33 11.23 29.04 0.33 -3.01 16 17 C -0.12 -1.81 9.98 -41.21 -0.41 -2.22 16 18 C -0.13 -2.10 5.80 -106.25 -0.62 -2.72 16 19 C -0.09 -1.33 9.61 36.01 0.35 -0.99 16 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.06 1.00 7.94 -51.93 -0.41 0.59 16 22 H 0.01 0.16 8.09 -51.93 -0.42 -0.26 16 23 H 0.33 6.16 7.55 -39.29 -0.30 5.86 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.16 1.78 8.06 -52.48 -0.42 1.35 16 28 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.07 1.19 6.91 -51.93 -0.36 0.84 16 LS Contribution 275.58 15.07 4.15 4.15 Total: -1.00 -30.64 275.58 -8.14 -38.78 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.31 Total: 1.22 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -0.58 Total: -20.02 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.01 Total: -40.34 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.39 Total: -0.91 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.64 -8.14 -38.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259405945.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.749 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds