Wall clock time and date at job start Mon Mar 30 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46894 * 111.00377 * 2 1 4 4 H 1.08997 * 109.47371 * 34.59081 * 3 2 1 5 5 C 1.53003 * 109.47377 * 154.59075 * 3 2 1 6 6 C 1.50701 * 109.46846 * 295.00257 * 5 3 2 7 7 H 1.07994 * 120.00257 * 359.97438 * 6 5 3 8 8 C 1.37882 * 119.99650 * 180.02562 * 6 5 3 9 9 N 1.31516 * 120.00159 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99789 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47079 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46913 * 119.99594 * 10 8 6 13 13 H 1.48500 * 109.47150 * 239.99685 * 10 8 6 14 14 C 1.50703 * 109.47198 * 274.59366 * 3 2 1 15 15 S 1.75894 * 125.19915 * 314.36210 * 14 3 2 16 16 C 1.75882 * 90.96582 * 180.18220 * 15 14 3 17 17 C 1.33392 * 109.59877 * 359.83203 * 16 15 14 18 18 C 1.33381 * 125.20848 * 134.22800 * 14 3 2 19 19 C 1.50702 * 122.53640 * 0.02562 * 18 14 3 20 20 H 1.08997 * 109.47483 * 184.66785 * 1 2 3 21 21 H 1.09007 * 109.47033 * 304.66952 * 1 2 3 22 22 H 1.09000 * 109.47109 * 64.66167 * 1 2 3 23 23 H 1.00906 * 110.99632 * 236.04350 * 2 1 3 24 24 H 1.09001 * 109.47048 * 55.00282 * 5 3 2 25 25 H 1.08997 * 109.46907 * 174.99898 * 5 3 2 26 26 H 0.97000 * 120.00258 * 180.02562 * 9 8 6 27 27 H 1.08005 * 125.20230 * 179.79149 * 16 15 14 28 28 H 1.07994 * 122.54414 * 179.97438 * 17 16 15 29 29 H 1.09004 * 109.47253 * 269.73574 * 19 18 14 30 30 H 1.08995 * 109.47542 * 149.73500 * 19 18 14 31 31 H 1.09000 * 109.47300 * 29.73879 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3359 2.0138 0.5834 5 6 3.3947 1.3805 0.6189 6 6 3.3041 0.9882 2.0712 7 1 2.3445 0.7560 2.5090 8 6 4.4462 0.9267 2.8412 9 7 5.6147 1.2100 2.3082 10 14 4.3338 0.4411 4.6414 11 1 2.9163 0.1750 4.9948 12 1 5.1410 -0.7833 4.8751 13 1 4.8549 1.5461 5.4856 14 6 2.0693 1.8811 -1.4163 15 16 2.7105 0.9820 -2.7853 16 6 2.3796 2.3310 -3.8643 17 6 1.8299 3.3315 -3.1743 18 6 1.6561 3.0820 -1.8238 19 6 1.0516 4.0932 -0.8841 20 1 -0.3634 -1.0242 0.0836 21 1 -0.3633 0.5846 0.8453 22 1 -0.3633 0.4398 -0.9288 23 1 1.8305 -0.5262 -0.7814 24 1 4.0307 0.6708 0.0898 25 1 3.8209 2.3804 0.5386 26 1 6.4182 1.1664 2.8497 27 1 2.5900 2.3471 -4.9236 28 1 1.5426 4.2654 -3.6342 29 1 -0.0290 3.9552 -0.8479 30 1 1.2777 5.0990 -1.2381 31 1 1.4689 3.9570 0.1136 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259405945.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:21 Heat of formation + Delta-G solvation = 3.354239 kcal Electronic energy + Delta-G solvation = -13475.200123 eV Core-core repulsion = 11268.007622 eV Total energy + Delta-G solvation = -2207.192501 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72840 -37.33623 -34.81985 -32.28116 -31.07150 -28.69711 -26.44908 -24.96112 -23.84369 -22.01926 -19.62338 -18.46664 -17.89530 -16.65155 -16.36900 -15.63535 -15.52730 -14.98728 -14.50448 -14.30350 -13.94125 -13.68414 -13.27114 -13.11360 -12.91695 -12.74580 -12.63824 -12.40403 -12.38852 -12.17032 -11.56311 -11.51543 -11.13794 -10.51413 -9.47740 -9.26640 -9.19766 -8.10856 -6.17392 0.12238 0.75378 1.15691 1.42117 1.43066 1.56378 1.81936 2.47252 3.21149 3.49083 3.93080 4.10307 4.32436 4.53819 4.56592 4.61775 4.68795 4.73360 4.80762 4.97860 5.02263 5.12948 5.16860 5.44924 5.57456 5.57677 5.65303 5.86261 6.22327 6.37930 6.53514 6.95706 7.48528 9.01447 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.008004 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.966230 B = 3497.390012 C = 3611.928685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.684 5.684 3 C 0.173 3.827 4 H 0.081 0.919 5 C 0.051 3.949 6 C -0.502 4.502 7 H 0.060 0.940 8 C -0.006 4.006 9 N -0.939 5.939 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.280 1.280 14 C -0.215 4.215 15 S 0.065 5.935 16 C -0.212 4.212 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.093 4.093 20 H 0.079 0.921 21 H 0.061 0.939 22 H 0.022 0.978 23 H 0.333 0.667 24 H -0.012 1.012 25 H -0.011 1.011 26 H 0.259 0.741 27 H 0.192 0.808 28 H 0.167 0.833 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.314 2.907 -10.712 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.313 5.313 3 C 0.062 3.938 4 H 0.099 0.901 5 C 0.013 3.987 6 C -0.541 4.541 7 H 0.078 0.922 8 C -0.202 4.202 9 N -0.581 5.581 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.209 1.209 13 H -0.206 1.206 14 C -0.334 4.334 15 S 0.329 5.671 16 C -0.347 4.347 17 C -0.164 4.164 18 C -0.133 4.133 19 C -0.152 4.152 20 H 0.097 0.903 21 H 0.080 0.920 22 H 0.040 0.960 23 H 0.151 0.849 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.068 0.932 27 H 0.209 0.791 28 H 0.184 0.816 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.482 1.364 -10.186 13.983 hybrid contribution -0.167 1.308 0.142 1.326 sum -9.649 2.672 -10.044 14.182 Atomic orbital electron populations 1.22223 0.86946 1.02476 0.99884 1.60480 1.08411 1.13049 1.49388 1.20140 0.97881 0.88643 0.87157 0.90067 1.18903 0.90582 0.94172 0.95014 1.21457 0.93314 1.43775 0.95530 0.92163 1.25911 0.95160 0.95986 1.03152 1.70120 0.98718 1.51446 1.37799 0.85440 0.78391 0.77636 0.79785 1.18732 1.20873 1.20631 1.25610 1.07339 0.99973 1.00471 1.84205 1.63114 1.20112 0.99643 1.25884 1.07929 0.96697 1.04230 1.20306 1.02259 1.01319 0.92485 1.19257 1.02780 0.95234 0.95995 1.20546 1.00590 0.97011 0.97013 0.90274 0.92033 0.95957 0.84903 0.99358 0.99308 0.93183 0.79061 0.81605 0.90082 0.89693 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 10.53 127.69 1.34 2.40 16 2 N -0.68 -26.96 6.31 -518.55 -3.27 -30.24 16 3 C 0.17 7.37 2.07 44.17 0.09 7.46 16 4 H 0.08 3.45 6.19 -2.39 -0.01 3.43 16 5 C 0.05 2.77 4.64 29.85 0.14 2.91 16 6 C -0.50 -29.12 8.84 25.60 0.23 -28.90 16 7 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 8 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 9 N -0.94 -58.67 13.29 21.45 0.28 -58.38 16 10 Si 0.96 45.87 29.54 68.60 2.03 47.90 16 11 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 C -0.22 -7.92 5.23 24.59 0.13 -7.79 16 15 S 0.06 2.11 22.21 -56.49 -1.25 0.85 16 16 C -0.21 -5.45 11.23 66.72 0.75 -4.70 16 17 C -0.13 -3.49 9.98 21.22 0.21 -3.27 16 18 C -0.12 -3.80 5.80 -20.92 -0.12 -3.93 16 19 C -0.09 -2.54 9.61 71.24 0.68 -1.85 16 20 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 21 H 0.06 1.89 7.94 -2.38 -0.02 1.87 16 22 H 0.02 0.63 8.09 -2.39 -0.02 0.61 16 23 H 0.33 12.62 7.55 -89.69 -0.68 11.94 16 24 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 25 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 26 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.19 3.52 8.06 -2.91 -0.02 3.49 16 28 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 29 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.05 1.63 6.91 -2.39 -0.02 1.61 16 Total: -1.00 -67.22 275.58 2.13 -65.09 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.44 Total: 12.34 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 3.91 Total: -37.56 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -2.99 Total: -88.62 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.25 Total: 0.85 kcal Total: -67.22 2.13 -65.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259405945.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.442 kcal (2) G-P(sol) polarization free energy of solvation -67.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds