Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38425 * 122.53856 * 2 1 4 4 C 1.33394 * 114.92234 * 180.27359 * 3 2 1 5 5 S 1.75882 * 109.59220 * 359.76874 * 4 3 2 6 6 C 1.33389 * 122.54262 * 179.83042 * 2 1 3 7 7 C 1.50697 * 125.19850 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.47533 * 344.72125 * 7 6 2 9 9 C 1.50697 * 109.47093 * 104.72344 * 7 6 2 10 10 H 1.08006 * 120.00313 * 59.95243 * 9 7 6 11 11 C 1.37881 * 120.00158 * 239.95783 * 9 7 6 12 12 N 1.31511 * 119.99848 * 3.70880 * 11 9 7 13 13 Si 1.86801 * 120.00156 * 183.71644 * 11 9 7 14 14 H 1.48500 * 109.46855 * 179.97438 * 13 11 9 15 15 H 1.48496 * 109.46945 * 299.99707 * 13 11 9 16 16 H 1.48505 * 109.47147 * 59.99664 * 13 11 9 17 17 N 1.46904 * 109.47000 * 224.71730 * 7 6 2 18 18 C 1.46905 * 110.99763 * 62.11270 * 17 7 6 19 19 C 1.46896 * 110.99844 * 186.06222 * 17 7 6 20 20 H 1.09006 * 109.47022 * 270.16888 * 1 2 3 21 21 H 1.09001 * 109.47099 * 30.16816 * 1 2 3 22 22 H 1.08997 * 109.47262 * 150.17051 * 1 2 3 23 23 H 1.08002 * 122.53943 * 0.04146 * 3 2 1 24 24 H 1.07996 * 125.20402 * 179.79406 * 4 3 2 25 25 H 0.97005 * 120.00012 * 355.25161 * 12 11 9 26 26 H 1.09003 * 109.46979 * 63.95273 * 18 17 7 27 27 H 1.08996 * 109.46690 * 183.95144 * 18 17 7 28 28 H 1.08998 * 109.47104 * 303.95343 * 18 17 7 29 29 H 1.09004 * 109.47307 * 62.33596 * 19 17 7 30 30 H 1.09005 * 109.47339 * 182.33584 * 19 17 7 31 31 H 1.08999 * 109.47740 * 302.33543 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9902 -0.0058 5 16 3.9386 -0.7304 -0.0050 6 6 2.2245 -1.1245 0.0033 7 6 1.6537 -2.5191 0.0069 8 1 0.5985 -2.4792 0.2772 9 6 1.7981 -3.1245 -1.3655 10 1 2.7785 -3.2443 -1.8025 11 6 0.6786 -3.5254 -2.0635 12 7 -0.5190 -3.3132 -1.5635 13 14 0.8631 -4.3703 -3.7193 14 1 -0.4804 -4.6991 -4.2596 15 1 1.5679 -3.4643 -4.6614 16 1 1.6487 -5.6195 -3.5528 17 7 2.3787 -3.3424 0.9839 18 6 2.2184 -2.8094 2.3435 19 6 1.9470 -4.7448 0.9140 20 1 -0.3633 0.0030 1.0277 21 1 -0.3633 0.8885 -0.5164 22 1 -0.3633 -0.8915 -0.5112 23 1 1.7964 2.1464 0.0007 24 1 4.3077 1.7823 -0.0099 25 1 -0.6137 -2.9376 -0.6741 26 1 1.1697 -2.8673 2.6352 27 1 2.8213 -3.3957 3.0369 28 1 2.5452 -1.7699 2.3670 29 1 2.1791 -5.1478 -0.0718 30 1 2.4691 -5.3241 1.6756 31 1 0.8723 -4.8033 1.0865 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259559726.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = 32.567303 kcal Electronic energy + Delta-G solvation = -13993.846385 eV Core-core repulsion = 11787.920657 eV Total energy + Delta-G solvation = -2205.925727 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.05925 -36.15403 -32.84278 -30.36240 -28.31255 -26.88739 -25.04229 -23.56999 -22.12544 -20.42912 -17.60770 -17.16648 -16.05611 -14.83540 -14.26515 -14.01917 -13.77968 -13.54344 -13.08921 -12.71502 -12.22327 -11.68746 -11.45797 -11.30980 -11.23345 -11.06006 -10.94425 -10.66219 -10.55490 -10.38962 -10.13140 -9.79021 -8.98348 -8.62365 -7.65590 -7.45541 -7.32555 -6.49316 -4.23699 1.88778 2.52894 2.96305 3.37038 3.38824 3.50614 3.57823 4.39741 4.98041 5.29063 5.59063 5.90185 5.96615 6.08234 6.09681 6.16352 6.21779 6.30234 6.42041 6.45709 6.57831 6.67402 6.78189 6.91115 6.99564 7.30300 7.34730 7.69326 8.03906 8.27408 8.40663 8.69062 9.44791 10.82170 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.012123 C = 0.010637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.919954 B = 2309.067612 C = 2631.569939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.162 4.162 3 C -0.116 4.116 4 C -0.265 4.265 5 S 0.098 5.902 6 C -0.086 4.086 7 C 0.243 3.757 8 H 0.043 0.957 9 C -0.570 4.570 10 H 0.059 0.941 11 C 0.028 3.972 12 N -0.901 5.901 13 Si 1.068 2.932 14 H -0.282 1.282 15 H -0.285 1.285 16 H -0.285 1.285 17 N -0.546 5.546 18 C 0.022 3.978 19 C 0.050 3.950 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.079 0.921 23 H 0.123 0.877 24 H 0.149 0.851 25 H 0.269 0.731 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 3.818 4.023 6.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.173 4.173 3 C -0.148 4.148 4 C -0.400 4.400 5 S 0.362 5.638 6 C -0.204 4.204 7 C 0.136 3.864 8 H 0.060 0.940 9 C -0.610 4.610 10 H 0.078 0.922 11 C -0.178 4.178 12 N -0.538 5.538 13 Si 0.896 3.104 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.211 1.211 17 N -0.271 5.271 18 C -0.127 4.127 19 C -0.098 4.098 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.098 0.902 23 H 0.141 0.859 24 H 0.166 0.834 25 H 0.082 0.918 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 5.025 2.388 2.640 6.158 hybrid contribution -1.193 1.658 1.481 2.523 sum 3.832 4.046 4.121 6.931 Atomic orbital electron populations 1.20448 0.90649 1.02949 1.00703 1.18670 0.97089 0.91657 1.09873 1.19873 0.92957 0.98464 1.03500 1.25374 0.99367 1.00024 1.15227 1.84092 1.08394 0.97970 1.73341 1.25048 0.94212 0.99917 1.01263 1.18254 0.91775 0.83779 0.92618 0.93957 1.21748 0.95965 1.42820 1.00431 0.92235 1.25956 0.92223 0.95116 1.04485 1.70908 1.23523 1.41344 1.18012 0.83545 0.75949 0.76346 0.74605 1.20683 1.21158 1.21081 1.62350 1.58607 1.02853 1.03267 1.22358 0.98125 1.00300 0.91940 1.21985 0.96640 0.89205 1.01998 0.93122 0.92870 0.90187 0.85883 0.83361 0.91756 0.97093 0.92924 0.92295 0.90290 0.94013 0.96997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.59 36.00 0.35 -1.42 16 2 C -0.16 -3.44 5.80 -106.25 -0.62 -4.06 16 3 C -0.12 -2.16 9.98 -41.21 -0.41 -2.57 16 4 C -0.26 -4.73 11.23 29.04 0.33 -4.40 16 5 S 0.10 1.96 23.04 -107.50 -2.48 -0.51 16 6 C -0.09 -1.94 3.92 -36.00 -0.14 -2.08 16 7 C 0.24 5.91 1.90 -70.02 -0.13 5.77 16 8 H 0.04 1.12 4.30 -51.93 -0.22 0.90 16 9 C -0.57 -15.15 6.82 -34.44 -0.24 -15.38 16 10 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 11 C 0.03 0.76 5.46 -17.82 -0.10 0.66 16 12 N -0.90 -25.26 13.54 55.43 0.75 -24.51 16 13 Si 1.07 24.18 29.91 -169.99 -5.08 19.09 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 N -0.55 -12.13 4.74 -246.00 -1.17 -13.30 16 18 C 0.02 0.42 9.39 60.07 0.56 0.99 16 19 C 0.05 1.06 9.18 60.06 0.55 1.61 16 20 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 21 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 22 H 0.08 1.83 5.84 -51.93 -0.30 1.53 16 23 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 24 H 0.15 2.18 8.06 -52.49 -0.42 1.75 16 25 H 0.27 7.49 5.21 -40.82 -0.21 7.28 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.14 6.90 -51.93 -0.36 0.78 16 29 H 0.08 1.79 7.02 -51.93 -0.36 1.43 16 30 H 0.04 0.76 8.12 -51.93 -0.42 0.33 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 267.84 15.07 4.04 4.04 Total: -1.00 -28.03 267.84 -7.83 -35.86 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.05 Total: 0.21 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 0.15 Total: -20.89 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.41 Total: -37.80 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.08 Total: 19.09 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.48 Total: -0.51 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.03 -7.83 -35.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259559726.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.430 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds