Wall clock time and date at job start Mon Mar 30 2020 02:44:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.38425 * 122.53856 * 2 1
4 4 C 1.33394 * 114.92234 * 180.27359 * 3 2 1
5 5 S 1.75882 * 109.59220 * 359.76874 * 4 3 2
6 6 C 1.33389 * 122.54262 * 179.83042 * 2 1 3
7 7 C 1.50697 * 125.19850 * 0.02562 * 6 2 1
8 8 H 1.09000 * 109.47533 * 344.72125 * 7 6 2
9 9 C 1.50697 * 109.47093 * 104.72344 * 7 6 2
10 10 H 1.08006 * 120.00313 * 59.95243 * 9 7 6
11 11 C 1.37881 * 120.00158 * 239.95783 * 9 7 6
12 12 N 1.31511 * 119.99848 * 3.70880 * 11 9 7
13 13 Si 1.86801 * 120.00156 * 183.71644 * 11 9 7
14 14 H 1.48500 * 109.46855 * 179.97438 * 13 11 9
15 15 H 1.48496 * 109.46945 * 299.99707 * 13 11 9
16 16 H 1.48505 * 109.47147 * 59.99664 * 13 11 9
17 17 N 1.46904 * 109.47000 * 224.71730 * 7 6 2
18 18 C 1.46905 * 110.99763 * 62.11270 * 17 7 6
19 19 C 1.46896 * 110.99844 * 186.06222 * 17 7 6
20 20 H 1.09006 * 109.47022 * 270.16888 * 1 2 3
21 21 H 1.09001 * 109.47099 * 30.16816 * 1 2 3
22 22 H 1.08997 * 109.47262 * 150.17051 * 1 2 3
23 23 H 1.08002 * 122.53943 * 0.04146 * 3 2 1
24 24 H 1.07996 * 125.20402 * 179.79406 * 4 3 2
25 25 H 0.97005 * 120.00012 * 355.25161 * 12 11 9
26 26 H 1.09003 * 109.46979 * 63.95273 * 18 17 7
27 27 H 1.08996 * 109.46690 * 183.95144 * 18 17 7
28 28 H 1.08998 * 109.47104 * 303.95343 * 18 17 7
29 29 H 1.09004 * 109.47307 * 62.33596 * 19 17 7
30 30 H 1.09005 * 109.47339 * 182.33584 * 19 17 7
31 31 H 1.08999 * 109.47740 * 302.33543 * 19 17 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2515 1.1670 0.0000
4 6 3.5737 0.9902 -0.0058
5 16 3.9386 -0.7304 -0.0050
6 6 2.2245 -1.1245 0.0033
7 6 1.6537 -2.5191 0.0069
8 1 0.5985 -2.4792 0.2772
9 6 1.7981 -3.1245 -1.3655
10 1 2.7785 -3.2443 -1.8025
11 6 0.6786 -3.5254 -2.0635
12 7 -0.5190 -3.3132 -1.5635
13 14 0.8631 -4.3703 -3.7193
14 1 -0.4804 -4.6991 -4.2596
15 1 1.5679 -3.4643 -4.6614
16 1 1.6487 -5.6195 -3.5528
17 7 2.3787 -3.3424 0.9839
18 6 2.2184 -2.8094 2.3435
19 6 1.9470 -4.7448 0.9140
20 1 -0.3633 0.0030 1.0277
21 1 -0.3633 0.8885 -0.5164
22 1 -0.3633 -0.8915 -0.5112
23 1 1.7964 2.1464 0.0007
24 1 4.3077 1.7823 -0.0099
25 1 -0.6137 -2.9376 -0.6741
26 1 1.1697 -2.8673 2.6352
27 1 2.8213 -3.3957 3.0369
28 1 2.5452 -1.7699 2.3670
29 1 2.1791 -5.1478 -0.0718
30 1 2.4691 -5.3241 1.6756
31 1 0.8723 -4.8033 1.0865
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259559726.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:22
Heat of formation + Delta-G solvation = 15.854233 kcal
Electronic energy + Delta-G solvation = -13994.571118 eV
Core-core repulsion = 11787.920657 eV
Total energy + Delta-G solvation = -2206.650461 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 225.088 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.70843 -37.82130 -34.79138 -31.95293 -30.03058 -28.58094 -26.78625 -25.43653
-23.66193 -22.16277 -19.25644 -18.99349 -17.72377 -16.53018 -15.94566 -15.80829
-15.56059 -15.10753 -14.73517 -14.41051 -13.83943 -13.43314 -13.06941 -12.98780
-12.82975 -12.69354 -12.63472 -12.36544 -12.19389 -12.15150 -11.91910 -11.39263
-10.90386 -10.61985 -9.27190 -9.12022 -9.04147 -8.55210 -6.32895 0.33944
0.98599 1.41036 1.53335 1.58741 1.78756 1.94924 2.53321 3.09998
3.45957 4.19337 4.31473 4.40219 4.48722 4.53538 4.62979 4.68333
4.73544 4.76359 4.86465 4.90563 4.98540 5.14461 5.21528 5.30652
5.70880 5.76453 5.86803 6.07372 6.38799 6.46998 6.68865 7.42335
8.73740
Molecular weight = 225.09amu
Principal moments of inertia in cm(-1)
A = 0.024557 B = 0.012123 C = 0.010637
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1139.919954 B = 2309.067612 C = 2631.569939
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 C -0.164 4.164
3 C -0.128 4.128
4 C -0.239 4.239
5 S 0.090 5.910
6 C -0.130 4.130
7 C 0.250 3.750
8 H 0.015 0.985
9 C -0.576 4.576
10 H 0.042 0.958
11 C -0.013 4.013
12 N -0.926 5.926
13 Si 1.106 2.894
14 H -0.284 1.284
15 H -0.276 1.276
16 H -0.269 1.269
17 N -0.553 5.553
18 C 0.027 3.973
19 C 0.056 3.944
20 H 0.064 0.936
21 H 0.075 0.925
22 H 0.044 0.956
23 H 0.156 0.844
24 H 0.188 0.812
25 H 0.259 0.741
26 H 0.007 0.993
27 H 0.080 0.920
28 H 0.057 0.943
29 H 0.057 0.943
30 H 0.075 0.925
31 H -0.005 1.005
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.311 5.136 4.386 8.592
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.176 4.176
3 C -0.159 4.159
4 C -0.374 4.374
5 S 0.354 5.646
6 C -0.248 4.248
7 C 0.142 3.858
8 H 0.032 0.968
9 C -0.615 4.615
10 H 0.061 0.939
11 C -0.214 4.214
12 N -0.564 5.564
13 Si 0.929 3.071
14 H -0.209 1.209
15 H -0.202 1.202
16 H -0.194 1.194
17 N -0.278 5.278
18 C -0.122 4.122
19 C -0.092 4.092
20 H 0.083 0.917
21 H 0.094 0.906
22 H 0.063 0.937
23 H 0.174 0.826
24 H 0.206 0.794
25 H 0.072 0.928
26 H 0.025 0.975
27 H 0.098 0.902
28 H 0.076 0.924
29 H 0.076 0.924
30 H 0.094 0.906
31 H 0.013 0.987
Dipole moment (debyes) X Y Z Total
from point charges 6.320 3.704 3.020 7.924
hybrid contribution -1.524 1.336 1.459 2.498
sum 4.796 5.040 4.480 8.274
Atomic orbital electron populations
1.20411 0.90452 1.02199 1.01390 1.19076 0.97673 0.92451 1.08401
1.20121 0.93138 0.98873 1.03778 1.25826 0.99950 0.99253 1.12347
1.84003 1.06742 1.00300 1.73554 1.24881 0.96020 0.99408 1.04482
1.17989 0.90690 0.85170 0.91937 0.96756 1.21853 0.94976 1.42996
1.01672 0.93919 1.27061 0.91896 0.95341 1.07082 1.70985 1.24245
1.43187 1.18007 0.83062 0.76002 0.76355 0.71715 1.20909 1.20207
1.19431 1.62287 1.58036 1.02977 1.04483 1.22363 0.98424 1.00638
0.90731 1.21944 0.95995 0.89362 1.01933 0.91748 0.90630 0.93746
0.82611 0.79434 0.92776 0.97481 0.90169 0.92410 0.92393 0.90595
0.98664
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -3.37 9.59 71.23 0.68 -2.69 16
2 C -0.16 -6.78 5.80 -20.92 -0.12 -6.90 16
3 C -0.13 -4.36 9.98 21.22 0.21 -4.15 16
4 C -0.24 -7.63 11.23 66.72 0.75 -6.88 16
5 S 0.09 3.47 23.04 -56.49 -1.30 2.16 16
6 C -0.13 -5.83 3.92 24.59 0.10 -5.73 16
7 C 0.25 12.40 1.90 43.42 0.08 12.48 16
8 H 0.02 0.82 4.30 -2.39 -0.01 0.81 16
9 C -0.58 -31.33 6.82 25.60 0.17 -31.16 16
10 H 0.04 2.41 7.82 -2.91 -0.02 2.38 16
11 C -0.01 -0.73 5.46 84.66 0.46 -0.26 16
12 N -0.93 -53.67 13.54 21.45 0.29 -53.38 16
13 Si 1.11 49.32 29.91 68.60 2.05 51.37 16
14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16
16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16
17 N -0.55 -24.59 4.74 -932.20 -4.42 -29.01 16
18 C 0.03 1.02 9.39 127.69 1.20 2.22 16
19 C 0.06 2.38 9.18 127.69 1.17 3.56 16
20 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16
21 H 0.07 2.57 8.13 -2.39 -0.02 2.55 16
22 H 0.04 2.09 5.84 -2.39 -0.01 2.07 16
23 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16
24 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16
25 H 0.26 15.18 5.21 -92.70 -0.48 14.70 16
26 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16
27 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16
28 H 0.06 2.18 6.90 -2.39 -0.02 2.16 16
29 H 0.06 2.68 7.02 -2.38 -0.02 2.66 16
30 H 0.08 2.66 8.12 -2.38 -0.02 2.64 16
31 H -0.01 -0.24 8.14 -2.39 -0.02 -0.26 16
Total: -1.00 -61.20 267.84 2.73 -58.48
By element:
Atomic # 1 Polarization: 8.51 SS G_CDS: 1.39 Total: 9.90 kcal
Atomic # 6 Polarization: -44.24 SS G_CDS: 4.71 Total: -39.53 kcal
Atomic # 7 Polarization: -78.26 SS G_CDS: -4.13 Total: -82.39 kcal
Atomic # 14 Polarization: 49.32 SS G_CDS: 2.05 Total: 51.37 kcal
Atomic # 16 Polarization: 3.47 SS G_CDS: -1.30 Total: 2.16 kcal
Total: -61.20 2.73 -58.48 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259559726.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.329 kcal
(2) G-P(sol) polarization free energy of solvation -61.204 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.125 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.854 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds