Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38425 * 122.53856 * 2 1 4 4 C 1.33394 * 114.92234 * 180.27359 * 3 2 1 5 5 S 1.75882 * 109.59220 * 359.76874 * 4 3 2 6 6 C 1.33389 * 122.54262 * 179.83042 * 2 1 3 7 7 C 1.50697 * 125.19850 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.47533 * 344.72125 * 7 6 2 9 9 C 1.50697 * 109.47093 * 104.72344 * 7 6 2 10 10 H 1.08006 * 120.00313 * 59.95243 * 9 7 6 11 11 C 1.37881 * 120.00158 * 239.95783 * 9 7 6 12 12 N 1.31511 * 119.99848 * 3.70880 * 11 9 7 13 13 Si 1.86801 * 120.00156 * 183.71644 * 11 9 7 14 14 H 1.48500 * 109.46855 * 179.97438 * 13 11 9 15 15 H 1.48496 * 109.46945 * 299.99707 * 13 11 9 16 16 H 1.48505 * 109.47147 * 59.99664 * 13 11 9 17 17 N 1.46904 * 109.47000 * 224.71730 * 7 6 2 18 18 C 1.46905 * 110.99763 * 62.11270 * 17 7 6 19 19 C 1.46896 * 110.99844 * 186.06222 * 17 7 6 20 20 H 1.09006 * 109.47022 * 270.16888 * 1 2 3 21 21 H 1.09001 * 109.47099 * 30.16816 * 1 2 3 22 22 H 1.08997 * 109.47262 * 150.17051 * 1 2 3 23 23 H 1.08002 * 122.53943 * 0.04146 * 3 2 1 24 24 H 1.07996 * 125.20402 * 179.79406 * 4 3 2 25 25 H 0.97005 * 120.00012 * 355.25161 * 12 11 9 26 26 H 1.09003 * 109.46979 * 63.95273 * 18 17 7 27 27 H 1.08996 * 109.46690 * 183.95144 * 18 17 7 28 28 H 1.08998 * 109.47104 * 303.95343 * 18 17 7 29 29 H 1.09004 * 109.47307 * 62.33596 * 19 17 7 30 30 H 1.09005 * 109.47339 * 182.33584 * 19 17 7 31 31 H 1.08999 * 109.47740 * 302.33543 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9902 -0.0058 5 16 3.9386 -0.7304 -0.0050 6 6 2.2245 -1.1245 0.0033 7 6 1.6537 -2.5191 0.0069 8 1 0.5985 -2.4792 0.2772 9 6 1.7981 -3.1245 -1.3655 10 1 2.7785 -3.2443 -1.8025 11 6 0.6786 -3.5254 -2.0635 12 7 -0.5190 -3.3132 -1.5635 13 14 0.8631 -4.3703 -3.7193 14 1 -0.4804 -4.6991 -4.2596 15 1 1.5679 -3.4643 -4.6614 16 1 1.6487 -5.6195 -3.5528 17 7 2.3787 -3.3424 0.9839 18 6 2.2184 -2.8094 2.3435 19 6 1.9470 -4.7448 0.9140 20 1 -0.3633 0.0030 1.0277 21 1 -0.3633 0.8885 -0.5164 22 1 -0.3633 -0.8915 -0.5112 23 1 1.7964 2.1464 0.0007 24 1 4.3077 1.7823 -0.0099 25 1 -0.6137 -2.9376 -0.6741 26 1 1.1697 -2.8673 2.6352 27 1 2.8213 -3.3957 3.0369 28 1 2.5452 -1.7699 2.3670 29 1 2.1791 -5.1478 -0.0718 30 1 2.4691 -5.3241 1.6756 31 1 0.8723 -4.8033 1.0865 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259559726.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = 15.854233 kcal Electronic energy + Delta-G solvation = -13994.571118 eV Core-core repulsion = 11787.920657 eV Total energy + Delta-G solvation = -2206.650461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.70843 -37.82130 -34.79138 -31.95293 -30.03058 -28.58094 -26.78625 -25.43653 -23.66193 -22.16277 -19.25644 -18.99349 -17.72377 -16.53018 -15.94566 -15.80829 -15.56059 -15.10753 -14.73517 -14.41051 -13.83943 -13.43314 -13.06941 -12.98780 -12.82975 -12.69354 -12.63472 -12.36544 -12.19389 -12.15150 -11.91910 -11.39263 -10.90386 -10.61985 -9.27190 -9.12022 -9.04147 -8.55210 -6.32895 0.33944 0.98599 1.41036 1.53335 1.58741 1.78756 1.94924 2.53321 3.09998 3.45957 4.19337 4.31473 4.40219 4.48722 4.53538 4.62979 4.68333 4.73544 4.76359 4.86465 4.90563 4.98540 5.14461 5.21528 5.30652 5.70880 5.76453 5.86803 6.07372 6.38799 6.46998 6.68865 7.42335 8.73740 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.012123 C = 0.010637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.919954 B = 2309.067612 C = 2631.569939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.164 4.164 3 C -0.128 4.128 4 C -0.239 4.239 5 S 0.090 5.910 6 C -0.130 4.130 7 C 0.250 3.750 8 H 0.015 0.985 9 C -0.576 4.576 10 H 0.042 0.958 11 C -0.013 4.013 12 N -0.926 5.926 13 Si 1.106 2.894 14 H -0.284 1.284 15 H -0.276 1.276 16 H -0.269 1.269 17 N -0.553 5.553 18 C 0.027 3.973 19 C 0.056 3.944 20 H 0.064 0.936 21 H 0.075 0.925 22 H 0.044 0.956 23 H 0.156 0.844 24 H 0.188 0.812 25 H 0.259 0.741 26 H 0.007 0.993 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.075 0.925 31 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 5.136 4.386 8.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.176 4.176 3 C -0.159 4.159 4 C -0.374 4.374 5 S 0.354 5.646 6 C -0.248 4.248 7 C 0.142 3.858 8 H 0.032 0.968 9 C -0.615 4.615 10 H 0.061 0.939 11 C -0.214 4.214 12 N -0.564 5.564 13 Si 0.929 3.071 14 H -0.209 1.209 15 H -0.202 1.202 16 H -0.194 1.194 17 N -0.278 5.278 18 C -0.122 4.122 19 C -0.092 4.092 20 H 0.083 0.917 21 H 0.094 0.906 22 H 0.063 0.937 23 H 0.174 0.826 24 H 0.206 0.794 25 H 0.072 0.928 26 H 0.025 0.975 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 6.320 3.704 3.020 7.924 hybrid contribution -1.524 1.336 1.459 2.498 sum 4.796 5.040 4.480 8.274 Atomic orbital electron populations 1.20411 0.90452 1.02199 1.01390 1.19076 0.97673 0.92451 1.08401 1.20121 0.93138 0.98873 1.03778 1.25826 0.99950 0.99253 1.12347 1.84003 1.06742 1.00300 1.73554 1.24881 0.96020 0.99408 1.04482 1.17989 0.90690 0.85170 0.91937 0.96756 1.21853 0.94976 1.42996 1.01672 0.93919 1.27061 0.91896 0.95341 1.07082 1.70985 1.24245 1.43187 1.18007 0.83062 0.76002 0.76355 0.71715 1.20909 1.20207 1.19431 1.62287 1.58036 1.02977 1.04483 1.22363 0.98424 1.00638 0.90731 1.21944 0.95995 0.89362 1.01933 0.91748 0.90630 0.93746 0.82611 0.79434 0.92776 0.97481 0.90169 0.92410 0.92393 0.90595 0.98664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.37 9.59 71.23 0.68 -2.69 16 2 C -0.16 -6.78 5.80 -20.92 -0.12 -6.90 16 3 C -0.13 -4.36 9.98 21.22 0.21 -4.15 16 4 C -0.24 -7.63 11.23 66.72 0.75 -6.88 16 5 S 0.09 3.47 23.04 -56.49 -1.30 2.16 16 6 C -0.13 -5.83 3.92 24.59 0.10 -5.73 16 7 C 0.25 12.40 1.90 43.42 0.08 12.48 16 8 H 0.02 0.82 4.30 -2.39 -0.01 0.81 16 9 C -0.58 -31.33 6.82 25.60 0.17 -31.16 16 10 H 0.04 2.41 7.82 -2.91 -0.02 2.38 16 11 C -0.01 -0.73 5.46 84.66 0.46 -0.26 16 12 N -0.93 -53.67 13.54 21.45 0.29 -53.38 16 13 Si 1.11 49.32 29.91 68.60 2.05 51.37 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 N -0.55 -24.59 4.74 -932.20 -4.42 -29.01 16 18 C 0.03 1.02 9.39 127.69 1.20 2.22 16 19 C 0.06 2.38 9.18 127.69 1.17 3.56 16 20 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 21 H 0.07 2.57 8.13 -2.39 -0.02 2.55 16 22 H 0.04 2.09 5.84 -2.39 -0.01 2.07 16 23 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 24 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16 25 H 0.26 15.18 5.21 -92.70 -0.48 14.70 16 26 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.06 2.18 6.90 -2.39 -0.02 2.16 16 29 H 0.06 2.68 7.02 -2.38 -0.02 2.66 16 30 H 0.08 2.66 8.12 -2.38 -0.02 2.64 16 31 H -0.01 -0.24 8.14 -2.39 -0.02 -0.26 16 Total: -1.00 -61.20 267.84 2.73 -58.48 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.39 Total: 9.90 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 4.71 Total: -39.53 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -4.13 Total: -82.39 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.05 Total: 51.37 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.30 Total: 2.16 kcal Total: -61.20 2.73 -58.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259559726.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.329 kcal (2) G-P(sol) polarization free energy of solvation -61.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds