Wall clock time and date at job start Mon Mar 30 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35794 * 117.00240 * 2 1 4 4 C 1.39198 * 120.84854 * 0.26691 * 3 2 1 5 5 C 1.38007 * 119.11204 * 180.28272 * 4 3 2 6 6 C 1.50703 * 119.56448 * 179.71354 * 5 4 3 7 7 H 1.09000 * 109.47088 * 154.72526 * 6 5 4 8 8 C 1.53005 * 109.46654 * 34.72969 * 6 5 4 9 9 C 1.50701 * 109.47151 * 274.73387 * 6 5 4 10 10 H 1.08002 * 119.99761 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99694 * 180.27762 * 9 6 5 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 6 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 6 14 14 H 1.48494 * 109.47230 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47301 * 119.99669 * 13 11 9 16 16 H 1.48498 * 109.47430 * 239.99516 * 13 11 9 17 17 N 1.31944 * 120.87011 * 359.43745 * 5 4 3 18 18 C 1.31962 * 121.87598 * 0.28066 * 17 5 4 19 19 C 1.38177 * 120.78926 * 0.02562 * 18 17 5 20 20 F 1.35102 * 120.47365 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47311 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47168 * 300.00575 * 1 2 3 23 23 H 1.09007 * 109.46979 * 60.00204 * 1 2 3 24 24 H 1.07992 * 120.44678 * 359.97438 * 4 3 2 25 25 H 1.08995 * 109.47438 * 299.99560 * 8 6 5 26 26 H 1.08996 * 109.47069 * 60.00420 * 8 6 5 27 27 H 1.09004 * 109.46658 * 179.97438 * 8 6 5 28 28 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 29 29 H 1.08002 * 119.61136 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3048 2.3884 0.0056 5 6 1.9683 3.5985 -0.0006 6 6 1.1765 4.8807 -0.0012 7 1 1.7780 5.6794 0.4329 8 6 -0.0969 4.6940 0.8262 9 6 0.8072 5.2424 -1.4168 10 1 1.1155 4.6075 -2.2343 11 6 0.0812 6.3871 -1.6687 12 7 -0.2939 7.1604 -0.6733 13 14 -0.3699 6.8395 -3.4241 14 1 0.1672 5.8133 -4.3534 15 1 -1.8478 6.9016 -3.5551 16 1 0.2127 8.1637 -3.7594 17 7 3.2869 3.6476 -0.0005 18 6 4.0250 2.5537 0.0000 19 6 3.4366 1.3035 -0.0002 20 9 4.1984 0.1877 0.0008 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.2254 2.3564 0.0096 25 1 -0.6984 3.8954 0.3922 26 1 0.1702 4.4325 1.8501 27 1 -0.6694 5.6216 0.8262 28 1 -0.8043 7.9659 -0.8506 29 1 5.1018 2.6365 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259941816.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:20 Heat of formation + Delta-G solvation = -54.940357 kcal Electronic energy + Delta-G solvation = -15293.416204 eV Core-core repulsion = 12517.482684 eV Total energy + Delta-G solvation = -2775.933520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.45242 -40.14990 -38.07918 -34.52769 -31.58710 -30.97857 -28.55281 -27.46563 -25.29857 -23.34329 -22.63874 -20.32963 -17.85461 -17.21645 -16.74787 -16.28512 -15.96361 -14.88410 -14.87337 -14.30383 -14.19773 -13.74830 -13.16936 -13.05369 -12.42430 -12.09737 -11.57465 -11.46157 -11.25973 -11.00705 -10.76805 -10.45026 -10.24825 -9.89968 -9.24638 -8.97378 -8.64781 -8.45412 -8.08591 -6.10620 -4.17876 1.46150 1.63460 3.19242 3.24588 3.33036 3.37492 4.16758 4.40084 4.46752 4.90702 5.03052 5.18423 5.22723 5.23650 5.35203 5.50179 5.65061 6.09224 6.19086 6.41544 6.70110 6.77618 6.93563 7.11290 7.39805 7.56931 7.73696 7.94726 8.21990 8.59740 8.82931 9.46636 10.95429 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.032814 B = 0.007918 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.099057 B = 3535.504672 C = 3746.530296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.129 3.871 4 C -0.233 4.233 5 C 0.206 3.794 6 C 0.081 3.919 7 H 0.054 0.946 8 C -0.136 4.136 9 C -0.506 4.506 10 H 0.056 0.944 11 C 0.065 3.935 12 N -0.887 5.887 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.483 5.483 18 C 0.108 3.892 19 C -0.020 4.020 20 F -0.138 7.138 21 H 0.100 0.900 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.150 0.850 25 H 0.030 0.970 26 H 0.012 0.988 27 H 0.092 0.908 28 H 0.262 0.738 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 -10.245 2.028 10.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.076 3.924 4 C -0.254 4.254 5 C 0.070 3.930 6 C 0.062 3.938 7 H 0.072 0.928 8 C -0.194 4.194 9 C -0.544 4.544 10 H 0.074 0.926 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.194 5.194 18 C -0.051 4.051 19 C -0.043 4.043 20 F -0.117 7.117 21 H 0.119 0.881 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.167 0.833 25 H 0.049 0.951 26 H 0.031 0.969 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.487 -9.532 2.064 9.866 hybrid contribution -0.775 -0.707 -0.994 1.445 sum 0.712 -10.239 1.070 10.320 Atomic orbital electron populations 1.23139 0.77744 1.03864 1.02271 1.86042 1.21973 1.25888 1.88371 1.19470 0.90938 0.85774 0.96236 1.22187 1.02243 0.91212 1.09764 1.22208 0.88835 0.96551 0.85400 1.17920 0.91387 0.87247 0.97250 0.92807 1.21889 0.99493 1.02820 0.95226 1.20915 1.34489 1.08203 0.90804 0.92553 1.24906 0.95596 0.95859 0.97317 1.69877 1.38008 1.14145 1.30507 0.86453 0.78056 0.78534 0.84506 1.19780 1.20912 1.20797 1.67800 1.07551 1.29403 1.14672 1.22813 1.00953 0.85466 0.95871 1.18137 0.86057 0.84542 1.15564 1.91437 1.74850 1.50421 1.94963 0.88149 0.92180 0.91963 0.83275 0.95132 0.96859 0.88945 0.92763 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.84 101.05 0.99 1.29 15 2 O -0.31 -5.04 10.42 -19.10 -0.20 -5.24 15 3 C 0.13 2.35 6.74 -38.78 -0.26 2.09 15 4 C -0.23 -4.49 8.17 -39.31 -0.32 -4.81 15 5 C 0.21 4.53 5.73 -82.63 -0.47 4.05 15 6 C 0.08 1.99 2.61 -92.92 -0.24 1.75 15 7 H 0.05 1.46 8.14 -51.93 -0.42 1.03 15 8 C -0.14 -3.07 8.39 37.16 0.31 -2.76 15 9 C -0.51 -13.52 8.54 -34.44 -0.29 -13.81 15 10 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 11 C 0.07 1.74 5.31 -17.82 -0.09 1.64 15 12 N -0.89 -24.31 11.33 55.43 0.63 -23.68 15 13 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 15 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 17 N -0.48 -10.29 10.27 -9.49 -0.10 -10.39 15 18 C 0.11 1.93 11.16 -17.52 -0.20 1.73 15 19 C -0.02 -0.37 7.35 -39.16 -0.29 -0.65 15 20 F -0.14 -2.38 17.18 2.25 0.04 -2.34 15 21 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.06 0.67 7.70 -51.93 -0.40 0.27 15 23 H 0.06 0.73 7.72 -51.93 -0.40 0.33 15 24 H 0.15 2.65 4.70 -52.49 -0.25 2.40 15 25 H 0.03 0.63 6.49 -51.93 -0.34 0.29 15 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 15 27 H 0.09 2.30 6.08 -51.93 -0.32 1.98 15 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 29 H 0.16 2.32 8.06 -52.49 -0.42 1.90 15 LS Contribution 255.12 15.07 3.84 3.84 Total: -1.00 -28.92 255.12 -4.60 -33.52 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -2.93 Total: -1.97 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.87 Total: -9.48 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.53 Total: -34.07 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.20 Total: -5.24 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.92 -4.60 -33.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941816.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.419 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds