Wall clock time and date at job start Mon Mar 30 2020 02:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38179 * 120.00074 * 2 1 4 4 C 1.38199 * 120.07982 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.95849 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47551 * 220.00275 * 5 4 3 7 7 N 1.46900 * 109.47395 * 340.00737 * 5 4 3 8 8 C 1.50702 * 109.46869 * 100.00330 * 5 4 3 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 5 4 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 5 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 5 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 C 1.38524 * 120.08668 * 0.25958 * 4 3 2 17 17 F 1.35094 * 119.99757 * 179.73989 * 16 4 3 18 18 C 1.38340 * 119.99926 * 359.48596 * 16 4 3 19 19 C 1.38706 * 119.92488 * 0.50797 * 18 16 4 20 20 O 1.35892 * 120.04666 * 179.72281 * 19 18 16 21 21 H 1.09000 * 109.46513 * 90.00477 * 1 2 3 22 22 H 1.09000 * 109.46839 * 210.00056 * 1 2 3 23 23 H 1.08997 * 109.47455 * 330.00656 * 1 2 3 24 24 H 1.07999 * 119.95896 * 359.97438 * 3 2 1 25 25 H 1.00903 * 111.00086 * 59.99217 * 7 5 4 26 26 H 1.00902 * 111.00206 * 183.95155 * 7 5 4 27 27 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 28 28 H 1.08003 * 120.03927 * 180.25214 * 18 16 4 29 29 H 0.96706 * 114.00570 * 270.02635 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1967 0.0000 4 6 3.5799 1.1986 -0.0005 5 6 4.3307 2.5052 -0.0011 6 1 5.1940 2.4281 -0.6620 7 7 3.4460 3.5782 -0.4745 8 6 4.7955 2.8181 1.3979 9 1 4.5701 2.1385 2.2065 10 6 5.5138 3.9689 1.6445 11 7 5.9241 4.2393 2.8644 12 14 5.9040 5.1441 0.2459 13 1 4.8153 6.1464 0.1232 14 1 7.1867 5.8382 0.5260 15 1 6.0206 4.3818 -1.0232 16 6 4.2760 0.0009 -0.0065 17 9 5.6269 0.0049 -0.0123 18 6 3.5878 -1.1991 -0.0012 19 6 2.2008 -1.2013 -0.0005 20 8 1.5222 -2.3787 -0.0010 21 1 -0.3632 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.6573 2.1316 -0.0004 25 1 2.6374 3.6698 0.1221 26 1 3.9441 4.4528 -0.5454 27 1 6.4291 5.0490 3.0380 28 1 4.1299 -2.1333 -0.0017 29 1 1.3257 -2.7192 -0.8846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260039245.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:44 Heat of formation + Delta-G solvation = -63.536193 kcal Electronic energy + Delta-G solvation = -15403.381181 eV Core-core repulsion = 12627.074917 eV Total energy + Delta-G solvation = -2776.306264 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.17789 -39.50721 -36.86372 -34.60033 -32.08632 -31.85215 -29.16843 -26.74087 -25.72055 -23.16401 -21.66684 -19.86547 -18.29455 -17.17040 -16.51813 -16.20613 -15.15149 -14.91668 -14.59822 -14.25907 -14.08088 -13.34156 -13.20487 -13.07131 -12.55446 -12.37830 -11.96735 -11.77271 -11.28055 -11.08398 -10.85754 -10.55940 -10.32346 -10.18936 -9.59908 -8.81786 -8.37708 -7.99726 -7.51336 -6.25859 -4.30136 1.57034 1.62762 3.10192 3.25763 3.25998 3.90317 4.20414 4.31127 4.98275 5.02007 5.13554 5.21499 5.36026 5.57055 5.75641 5.92011 5.94703 6.01092 6.21044 6.46402 6.48966 6.70082 6.83580 7.06438 7.25856 7.38971 7.81490 7.97603 8.18629 8.40982 8.80073 9.31988 10.86793 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.008745 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.655437 B = 3201.230930 C = 3520.950479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.126 4.126 3 C -0.071 4.071 4 C -0.059 4.059 5 C 0.209 3.791 6 H 0.056 0.944 7 N -0.848 5.848 8 C -0.545 4.545 9 H 0.076 0.924 10 C 0.075 3.925 11 N -0.887 5.887 12 Si 0.873 3.127 13 H -0.274 1.274 14 H -0.289 1.289 15 H -0.259 1.259 16 C 0.110 3.890 17 F -0.132 7.132 18 C -0.182 4.182 19 C 0.103 3.897 20 O -0.494 6.494 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.137 0.863 25 H 0.332 0.668 26 H 0.320 0.680 27 H 0.267 0.733 28 H 0.133 0.867 29 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 -7.497 -7.957 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.090 4.090 4 C -0.061 4.061 5 C 0.100 3.900 6 H 0.074 0.926 7 N -0.382 5.382 8 C -0.584 4.584 9 H 0.094 0.906 10 C -0.129 4.129 11 N -0.524 5.524 12 Si 0.701 3.299 13 H -0.200 1.200 14 H -0.216 1.216 15 H -0.183 1.183 16 C 0.090 3.910 17 F -0.110 7.110 18 C -0.201 4.201 19 C 0.058 3.942 20 O -0.304 6.304 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.155 0.845 25 H 0.144 0.856 26 H 0.136 0.864 27 H 0.077 0.923 28 H 0.150 0.850 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -8.319 -7.743 -7.890 13.835 hybrid contribution 0.865 1.038 -0.053 1.353 sum -7.454 -6.705 -7.943 12.791 Atomic orbital electron populations 1.20612 0.90875 1.02898 1.01805 1.20170 0.96598 0.92416 1.03452 1.20639 0.92822 0.97247 0.98275 1.20179 0.94095 0.94900 0.96907 1.18377 0.90742 0.85058 0.95869 0.92607 1.59750 1.12030 1.09170 1.57276 1.21527 1.35966 1.07957 0.92992 0.90583 1.25012 0.94545 0.97777 0.95551 1.69888 1.36755 1.26089 1.19656 0.87011 0.78085 0.81487 0.83326 1.20025 1.21574 1.18328 1.17265 0.77231 0.93302 1.03157 1.91489 1.28574 1.97288 1.93657 1.21166 0.94232 0.97453 1.07248 1.17744 0.88695 0.84724 1.03000 1.84804 1.76261 1.36297 1.32992 0.91733 0.91302 0.91501 0.84546 0.85574 0.86361 0.92283 0.84956 0.76264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.79 36.01 0.35 -0.93 15 2 C -0.13 -1.99 5.89 -104.46 -0.62 -2.60 15 3 C -0.07 -1.30 8.90 -39.62 -0.35 -1.65 15 4 C -0.06 -1.26 5.03 -104.53 -0.53 -1.79 15 5 C 0.21 4.96 2.20 -70.02 -0.15 4.81 15 6 H 0.06 1.41 6.98 -51.93 -0.36 1.05 15 7 N -0.85 -18.10 8.62 -6.65 -0.06 -18.16 15 8 C -0.54 -15.17 9.29 -34.44 -0.32 -15.49 15 9 H 0.08 2.35 7.98 -52.49 -0.42 1.93 15 10 C 0.08 2.12 5.47 -17.82 -0.10 2.02 15 11 N -0.89 -26.66 13.96 55.43 0.77 -25.88 15 12 Si 0.87 20.80 24.61 -169.99 -4.18 16.61 15 13 H -0.27 -6.17 7.01 56.52 0.40 -5.78 15 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 15 H -0.26 -6.03 6.54 56.52 0.37 -5.66 15 16 C 0.11 2.26 7.23 -39.44 -0.29 1.97 15 17 F -0.13 -2.88 16.65 2.25 0.04 -2.85 15 18 C -0.18 -3.13 9.97 -39.37 -0.39 -3.52 15 19 C 0.10 1.62 6.68 -39.23 -0.26 1.36 15 20 O -0.49 -6.40 12.55 -19.40 -0.24 -6.65 15 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.07 0.81 7.53 -51.93 -0.39 0.41 15 23 H 0.07 0.77 8.09 -51.93 -0.42 0.35 15 24 H 0.14 2.29 6.24 -52.49 -0.33 1.97 15 25 H 0.33 6.58 7.28 -39.29 -0.29 6.29 15 26 H 0.32 6.99 4.32 -39.29 -0.17 6.82 15 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 28 H 0.13 2.00 8.06 -52.48 -0.42 1.57 15 29 H 0.38 2.99 9.06 45.56 0.41 3.40 15 LS Contribution 249.48 15.07 3.76 3.76 Total: -1.00 -31.21 249.48 -4.55 -35.75 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -1.98 Total: 13.22 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.65 Total: -15.81 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.72 Total: -44.04 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.24 Total: -6.65 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.18 Total: 16.61 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.21 -4.55 -35.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039245.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.781 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds