Wall clock time and date at job start Mon Mar 30 2020 02:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38179 * 120.00074 * 2 1 4 4 C 1.38199 * 120.07982 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.95849 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47551 * 220.00275 * 5 4 3 7 7 N 1.46900 * 109.47395 * 340.00737 * 5 4 3 8 8 C 1.50702 * 109.46869 * 100.00330 * 5 4 3 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 5 4 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 5 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 5 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 C 1.38524 * 120.08668 * 0.25958 * 4 3 2 17 17 F 1.35094 * 119.99757 * 179.73989 * 16 4 3 18 18 C 1.38340 * 119.99926 * 359.48596 * 16 4 3 19 19 C 1.38706 * 119.92488 * 0.50797 * 18 16 4 20 20 O 1.35892 * 120.04666 * 179.72281 * 19 18 16 21 21 H 1.09000 * 109.46513 * 90.00477 * 1 2 3 22 22 H 1.09000 * 109.46839 * 210.00056 * 1 2 3 23 23 H 1.08997 * 109.47455 * 330.00656 * 1 2 3 24 24 H 1.07999 * 119.95896 * 359.97438 * 3 2 1 25 25 H 1.00903 * 111.00086 * 59.99217 * 7 5 4 26 26 H 1.00902 * 111.00206 * 183.95155 * 7 5 4 27 27 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 28 28 H 1.08003 * 120.03927 * 180.25214 * 18 16 4 29 29 H 0.96706 * 114.00570 * 270.02635 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1967 0.0000 4 6 3.5799 1.1986 -0.0005 5 6 4.3307 2.5052 -0.0011 6 1 5.1940 2.4281 -0.6620 7 7 3.4460 3.5782 -0.4745 8 6 4.7955 2.8181 1.3979 9 1 4.5701 2.1385 2.2065 10 6 5.5138 3.9689 1.6445 11 7 5.9241 4.2393 2.8644 12 14 5.9040 5.1441 0.2459 13 1 4.8153 6.1464 0.1232 14 1 7.1867 5.8382 0.5260 15 1 6.0206 4.3818 -1.0232 16 6 4.2760 0.0009 -0.0065 17 9 5.6269 0.0049 -0.0123 18 6 3.5878 -1.1991 -0.0012 19 6 2.2008 -1.2013 -0.0005 20 8 1.5222 -2.3787 -0.0010 21 1 -0.3632 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.6573 2.1316 -0.0004 25 1 2.6374 3.6698 0.1221 26 1 3.9441 4.4528 -0.5454 27 1 6.4291 5.0490 3.0380 28 1 4.1299 -2.1333 -0.0017 29 1 1.3257 -2.7192 -0.8846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260039245.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:44 Heat of formation + Delta-G solvation = -88.258104 kcal Electronic energy + Delta-G solvation = -15404.453204 eV Core-core repulsion = 12627.074917 eV Total energy + Delta-G solvation = -2777.378286 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.78844 -40.81714 -38.26303 -36.23815 -33.99212 -33.26726 -30.63855 -28.44174 -27.19284 -24.81986 -23.11028 -21.41371 -19.61884 -19.19798 -18.06866 -17.66714 -16.76405 -16.56471 -16.14569 -15.89089 -15.46958 -14.96794 -14.74964 -14.42403 -14.13213 -13.75571 -13.67113 -13.05113 -12.85575 -12.76451 -12.51426 -12.08131 -11.94414 -11.60424 -11.54775 -10.95084 -9.79734 -9.60490 -9.13198 -8.43785 -6.53412 0.18153 0.25461 1.20559 1.30484 1.39580 2.18227 2.53904 2.88325 3.06921 3.64723 3.73372 3.84237 3.98389 4.17061 4.38576 4.74325 4.79961 4.85161 4.92064 5.01211 5.16545 5.30435 5.35705 5.50343 5.52127 5.88423 5.98536 6.30355 6.49901 6.63762 6.87099 7.12958 8.72779 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.008745 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.655437 B = 3201.230930 C = 3520.950479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.120 4.120 3 C -0.075 4.075 4 C -0.095 4.095 5 C 0.218 3.782 6 H 0.037 0.963 7 N -0.832 5.832 8 C -0.549 4.549 9 H 0.027 0.973 10 C 0.018 3.982 11 N -0.936 5.936 12 Si 0.940 3.060 13 H -0.245 1.245 14 H -0.290 1.290 15 H -0.251 1.251 16 C 0.078 3.922 17 F -0.151 7.151 18 C -0.181 4.181 19 C 0.120 3.880 20 O -0.492 6.492 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.147 0.853 25 H 0.342 0.658 26 H 0.319 0.681 27 H 0.270 0.730 28 H 0.152 0.848 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 -7.960 -9.709 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.097 4.097 5 C 0.108 3.892 6 H 0.055 0.945 7 N -0.366 5.366 8 C -0.589 4.589 9 H 0.045 0.955 10 C -0.181 4.181 11 N -0.575 5.575 12 Si 0.764 3.236 13 H -0.170 1.170 14 H -0.217 1.217 15 H -0.175 1.175 16 C 0.058 3.942 17 F -0.130 7.130 18 C -0.200 4.200 19 C 0.075 3.925 20 O -0.305 6.305 21 H 0.108 0.892 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.165 0.835 25 H 0.155 0.845 26 H 0.135 0.865 27 H 0.079 0.921 28 H 0.169 0.831 29 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -10.535 -8.229 -9.669 16.498 hybrid contribution 1.431 0.992 0.546 1.824 sum -9.105 -7.237 -9.123 14.782 Atomic orbital electron populations 1.20700 0.87738 1.03730 1.03689 1.20561 0.98724 0.91429 1.01319 1.20797 0.91601 0.98880 0.98072 1.20112 0.95486 0.93831 1.00231 1.18062 0.91089 0.87354 0.92662 0.94507 1.59670 1.11618 1.08439 1.56854 1.21732 1.36013 1.07059 0.94070 0.95471 1.25923 0.94192 0.99762 0.98257 1.70044 1.38142 1.27134 1.22206 0.85925 0.78505 0.79397 0.79738 1.16981 1.21739 1.17531 1.17628 0.76682 0.94570 1.05299 1.91426 1.30040 1.97438 1.94104 1.21380 0.95181 0.96938 1.06506 1.17768 0.88162 0.85834 1.00701 1.84744 1.75464 1.34840 1.35408 0.89152 0.90371 0.90814 0.83510 0.84485 0.86500 0.92056 0.83068 0.72953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.79 71.24 0.70 -1.36 15 2 C -0.12 -3.44 5.89 -19.76 -0.12 -3.56 15 3 C -0.08 -2.63 8.90 22.25 0.20 -2.43 15 4 C -0.10 -4.08 5.03 -19.81 -0.10 -4.18 15 5 C 0.22 10.54 2.20 43.42 0.10 10.64 15 6 H 0.04 1.90 6.98 -2.39 -0.02 1.89 15 7 N -0.83 -34.57 8.62 -174.96 -1.51 -36.08 15 8 C -0.55 -31.77 9.29 25.60 0.24 -31.53 15 9 H 0.03 1.78 7.98 -2.91 -0.02 1.76 15 10 C 0.02 1.05 5.47 84.66 0.46 1.51 15 11 N -0.94 -58.17 13.96 21.45 0.30 -57.87 15 12 Si 0.94 43.12 24.61 68.60 1.69 44.81 15 13 H -0.25 -10.08 7.01 99.48 0.70 -9.39 15 14 H -0.29 -13.34 7.11 99.48 0.71 -12.64 15 15 H -0.25 -11.14 6.54 99.48 0.65 -10.49 15 16 C 0.08 3.24 7.23 22.36 0.16 3.40 15 17 F -0.15 -6.93 16.65 44.97 0.75 -6.18 15 18 C -0.18 -6.02 9.97 22.41 0.22 -5.79 15 19 C 0.12 3.45 6.68 22.50 0.15 3.60 15 20 O -0.49 -10.65 12.55 -92.33 -1.16 -11.81 15 21 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.08 1.47 7.53 -2.39 -0.02 1.45 15 23 H 0.07 1.42 8.09 -2.39 -0.02 1.40 15 24 H 0.15 4.68 6.24 -2.91 -0.02 4.66 15 25 H 0.34 13.11 7.28 -89.69 -0.65 12.46 15 26 H 0.32 13.31 4.32 -89.69 -0.39 12.92 15 27 H 0.27 15.59 8.31 -92.71 -0.77 14.82 15 28 H 0.15 4.32 8.06 -2.91 -0.02 4.30 15 29 H 0.41 4.38 9.06 -74.05 -0.67 3.71 15 Total: -1.00 -70.11 249.48 1.52 -68.59 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.56 Total: 28.24 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 2.01 Total: -29.70 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -1.21 Total: -93.95 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.16 Total: -11.81 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.75 Total: -6.18 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.69 Total: 44.81 kcal Total: -70.11 1.52 -68.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039245.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.665 kcal (2) G-P(sol) polarization free energy of solvation -70.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds