Wall clock time and date at job start Mon Mar 30 2020 02:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38420 * 122.53494 * 2 1 4 4 C 1.33394 * 114.91813 * 180.02562 * 3 2 1 5 5 S 1.75883 * 109.59320 * 359.75918 * 4 3 2 6 6 C 1.33383 * 122.54038 * 180.02562 * 2 1 3 7 7 C 1.50706 * 125.20495 * 359.95183 * 6 2 1 8 8 H 1.09001 * 109.46547 * 0.02562 * 7 6 2 9 9 C 1.52997 * 109.47051 * 120.00440 * 7 6 2 10 10 C 1.52999 * 109.46953 * 240.00532 * 7 6 2 11 11 H 1.09001 * 109.47362 * 299.99339 * 10 7 6 12 12 N 1.46898 * 109.47548 * 60.00078 * 10 7 6 13 13 C 1.50706 * 109.46573 * 179.97438 * 10 7 6 14 14 H 1.07995 * 120.00167 * 359.72054 * 13 10 7 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 10 7 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48507 * 109.46754 * 210.00056 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 H 1.08993 * 109.47236 * 269.97467 * 1 2 3 22 22 H 1.09004 * 109.47088 * 29.97976 * 1 2 3 23 23 H 1.08998 * 109.47090 * 149.97523 * 1 2 3 24 24 H 1.07995 * 122.54335 * 0.04041 * 3 2 1 25 25 H 1.08003 * 125.19845 * 180.02562 * 4 3 2 26 26 H 1.08992 * 109.47303 * 59.99741 * 9 7 6 27 27 H 1.09002 * 109.47153 * 180.02562 * 9 7 6 28 28 H 1.09001 * 109.46832 * 300.00037 * 9 7 6 29 29 H 1.00899 * 110.99915 * 296.04472 * 12 10 7 30 30 H 1.00900 * 110.99708 * 59.99740 * 12 10 7 31 31 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9902 -0.0005 5 16 3.9386 -0.7304 0.0059 6 6 2.2245 -1.1244 -0.0005 7 6 1.6537 -2.5192 -0.0001 8 1 0.5650 -2.4662 0.0002 9 6 2.1273 -3.2644 -1.2496 10 6 2.1289 -3.2643 1.2489 11 1 3.2176 -3.3173 1.2482 12 7 1.6742 -2.5489 2.4486 13 6 1.5576 -4.6589 1.2495 14 1 0.9159 -4.9799 0.4424 15 6 1.8501 -5.5231 2.2833 16 7 2.6271 -5.1303 3.2689 17 14 1.1425 -7.2519 2.2837 18 1 2.0765 -8.1693 1.5828 19 1 0.9564 -7.7101 3.6840 20 1 -0.1678 -7.2507 1.5850 21 1 -0.3633 -0.0005 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5142 24 1 1.7964 2.1464 0.0006 25 1 4.3077 1.7824 -0.0002 26 1 3.2160 -3.3173 -1.2503 27 1 1.7141 -4.2731 -1.2495 28 1 1.7888 -2.7335 -2.1393 29 1 2.0947 -1.6334 2.5048 30 1 0.6675 -2.4865 2.4725 31 1 2.8325 -5.7382 3.9963 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260981546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:17 Heat of formation + Delta-G solvation = 19.015012 kcal Electronic energy + Delta-G solvation = -13677.777367 eV Core-core repulsion = 11471.263968 eV Total energy + Delta-G solvation = -2206.513399 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.35698 -35.58788 -32.17989 -30.52189 -29.86420 -26.86242 -25.42513 -23.25095 -22.15319 -19.77442 -18.15180 -16.54598 -16.10170 -14.91799 -14.63855 -14.00299 -13.69875 -13.45570 -12.98556 -12.60079 -12.46777 -11.82186 -11.71068 -11.51727 -11.32775 -11.07861 -10.90979 -10.73960 -10.56765 -10.44533 -10.02257 -9.61548 -8.89342 -8.36748 -8.09899 -7.89961 -6.86604 -5.81272 -3.95676 1.46236 2.10832 2.50791 3.07904 3.35716 3.43145 3.44845 4.51236 5.22980 5.33040 5.43495 5.62431 5.73907 5.86414 5.88379 5.95342 6.09795 6.19443 6.34031 6.40002 6.54587 6.72611 6.81047 6.82683 6.97727 7.06225 7.60195 7.95543 8.28144 8.73716 9.11430 9.25222 9.72712 11.23330 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.041318 B = 0.008185 C = 0.007934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.505591 B = 3420.053046 C = 3528.400799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.140 4.140 3 C -0.124 4.124 4 C -0.241 4.241 5 S 0.102 5.898 6 C -0.133 4.133 7 C -0.063 4.063 8 H 0.076 0.924 9 C -0.128 4.128 10 C 0.237 3.763 11 H 0.037 0.963 12 N -0.810 5.810 13 C -0.535 4.535 14 H 0.054 0.946 15 C 0.083 3.917 16 N -0.846 5.846 17 Si 0.880 3.120 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.129 0.871 25 H 0.155 0.845 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.295 0.705 30 H 0.314 0.686 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 10.074 -6.895 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.151 4.151 3 C -0.155 4.155 4 C -0.377 4.377 5 S 0.367 5.633 6 C -0.251 4.251 7 C -0.086 4.086 8 H 0.094 0.906 9 C -0.186 4.186 10 C 0.127 3.873 11 H 0.055 0.945 12 N -0.335 5.335 13 C -0.574 4.574 14 H 0.072 0.928 15 C -0.124 4.124 16 N -0.481 5.481 17 Si 0.708 3.292 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.201 1.201 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.147 0.853 25 H 0.173 0.827 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.988 8.596 -6.272 10.686 hybrid contribution -1.978 0.714 -0.576 2.181 sum -0.990 9.310 -6.848 11.599 Atomic orbital electron populations 1.20439 0.90376 1.01910 1.01916 1.18769 0.97130 0.91667 1.07565 1.19924 0.92908 0.98750 1.03955 1.25479 0.99564 0.99681 1.12936 1.84365 1.07134 0.99076 1.72679 1.24828 0.95034 0.99897 1.05303 1.21060 0.99515 0.87341 1.00646 0.90623 1.21707 1.00798 1.00869 0.95238 1.19079 0.95933 0.91372 0.80959 0.94537 1.59131 1.10143 1.19969 1.44271 1.20922 1.32524 0.96206 1.07759 0.92751 1.24950 0.94627 0.97398 0.95378 1.70115 1.34412 1.34235 1.09302 0.86833 0.79528 0.85772 0.77089 1.20880 1.21378 1.20107 0.91702 0.92419 0.91600 0.85303 0.82730 0.93363 0.90926 0.94811 0.89415 0.87486 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.70 36.01 0.35 -0.86 16 2 C -0.14 -2.26 5.80 -106.25 -0.62 -2.87 16 3 C -0.12 -1.80 9.98 -41.21 -0.41 -2.22 16 4 C -0.24 -3.49 11.23 29.04 0.33 -3.17 16 5 S 0.10 1.73 22.90 -107.50 -2.46 -0.74 16 6 C -0.13 -2.39 4.06 -36.00 -0.15 -2.54 16 7 C -0.06 -1.25 2.32 -91.77 -0.21 -1.47 16 8 H 0.08 1.50 6.26 -51.93 -0.33 1.18 16 9 C -0.13 -2.41 8.87 37.16 0.33 -2.08 16 10 C 0.24 5.73 2.19 -68.86 -0.15 5.58 16 11 H 0.04 1.00 7.99 -51.93 -0.42 0.59 16 12 N -0.81 -19.29 8.47 -5.65 -0.05 -19.34 16 13 C -0.54 -14.34 7.99 -34.44 -0.28 -14.61 16 14 H 0.05 1.43 6.72 -52.49 -0.35 1.07 16 15 C 0.08 2.31 5.39 -17.82 -0.10 2.21 16 16 N -0.85 -24.81 12.77 55.43 0.71 -24.10 16 17 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 23 H 0.07 0.94 6.66 -51.93 -0.35 0.59 16 24 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 25 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 26 H 0.05 0.91 8.01 -51.93 -0.42 0.49 16 27 H 0.07 1.43 6.63 -51.93 -0.34 1.08 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.30 6.59 8.13 -39.29 -0.32 6.27 16 30 H 0.31 7.18 8.99 -39.29 -0.35 6.82 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 270.74 15.07 4.08 4.08 Total: -1.00 -28.97 270.74 -7.77 -36.74 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.12 Total: 9.16 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -0.90 Total: -22.02 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.66 Total: -43.44 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.46 Total: -0.74 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.97 -7.77 -36.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260981546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.755 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds