Wall clock time and date at job start Mon Mar 30 2020 03:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.47194 * 2 1 4 4 C 1.46897 * 111.00228 * 174.81920 * 3 2 1 5 5 H 1.08992 * 109.46875 * 324.69234 * 4 3 2 6 6 C 1.50697 * 109.47445 * 204.68539 * 4 3 2 7 7 H 1.07999 * 120.00332 * 239.99767 * 6 4 3 8 8 C 1.37882 * 119.99545 * 60.00008 * 6 4 3 9 9 N 1.31508 * 119.99995 * 0.02562 * 8 6 4 10 10 Si 1.86807 * 119.99855 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46999 * 89.99951 * 10 8 6 12 12 H 1.48497 * 109.47120 * 210.00093 * 10 8 6 13 13 H 1.48500 * 109.46981 * 330.00016 * 10 8 6 14 14 C 1.50706 * 109.47078 * 84.68833 * 4 3 2 15 15 S 1.75886 * 125.20209 * 46.06962 * 14 4 3 16 16 C 1.75885 * 90.96717 * 180.02562 * 15 14 4 17 17 C 1.33387 * 109.60002 * 0.02562 * 16 15 14 18 18 C 1.33386 * 125.20209 * 226.11748 * 14 4 3 19 19 C 1.50701 * 122.54004 * 359.97438 * 18 14 4 20 20 H 1.08992 * 109.47211 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47139 * 300.00895 * 1 2 3 22 22 H 1.09000 * 109.46983 * 60.00192 * 1 2 3 23 23 H 1.08997 * 109.47190 * 239.99717 * 2 1 3 24 24 H 1.08995 * 109.46639 * 119.99514 * 2 1 3 25 25 H 1.00906 * 111.00158 * 298.77388 * 3 2 1 26 26 H 0.97005 * 120.00032 * 180.02562 * 9 8 6 27 27 H 1.08002 * 125.20005 * 180.02562 * 16 15 14 28 28 H 1.07990 * 122.54408 * 180.26732 * 17 16 15 29 29 H 1.09000 * 109.47027 * 270.00544 * 19 18 14 30 30 H 1.08999 * 109.46813 * 30.00665 * 19 18 14 31 31 H 1.09002 * 109.47131 * 150.00273 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4829 1.4260 0.1238 5 1 3.8154 0.6162 0.7731 6 6 3.9001 2.7478 0.7153 7 1 4.5520 3.4061 0.1604 8 6 3.4495 3.1166 1.9652 9 7 2.6561 2.3147 2.6412 10 14 3.9672 4.7547 2.6988 11 1 2.9891 5.8024 2.3101 12 1 4.0105 4.6426 4.1789 13 1 5.3135 5.1213 2.1906 14 6 4.1070 1.2661 -1.2386 15 16 3.6015 2.1183 -2.6918 16 6 4.8403 1.3025 -3.6370 17 6 5.5312 0.4758 -2.8506 18 6 5.1266 0.4559 -1.5269 19 6 5.7878 -0.4155 -0.4902 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 1.7127 1.8770 -0.8257 26 1 2.3389 2.5743 3.5204 27 1 5.0149 1.4487 -4.6927 28 1 6.3476 -0.1284 -3.2176 29 1 6.6089 0.1312 -0.0264 30 1 5.0585 -0.6910 0.2715 31 1 6.1743 -1.3168 -0.9661 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157595.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:02 Heat of formation + Delta-G solvation = 25.601730 kcal Electronic energy + Delta-G solvation = -13664.050792 eV Core-core repulsion = 11457.823014 eV Total energy + Delta-G solvation = -2206.227777 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.93421 -35.47087 -32.48902 -30.83667 -29.38108 -26.70205 -25.47100 -22.71032 -21.45007 -20.73065 -17.71158 -16.62722 -16.28500 -14.83372 -14.39380 -14.09981 -13.63870 -13.40024 -12.85452 -12.67727 -12.36669 -11.73728 -11.48957 -11.29361 -11.16879 -11.07077 -10.89149 -10.77669 -10.62240 -10.34629 -10.02975 -9.77308 -9.21023 -8.40244 -7.82509 -7.62450 -6.95997 -5.88726 -4.01575 1.74560 2.35432 2.76419 3.34694 3.36942 3.41999 3.46450 4.49469 5.24869 5.45649 5.70758 5.73772 5.88662 5.93789 6.02587 6.10882 6.22236 6.30815 6.40587 6.48472 6.50411 6.66219 6.83881 6.91400 7.07782 7.20083 7.33186 7.92695 8.16468 8.56754 8.72952 9.09833 9.65797 11.15839 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.011505 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.403662 B = 2433.167981 C = 2970.671772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.058 3.942 3 N -0.644 5.644 4 C 0.279 3.721 5 H 0.059 0.941 6 C -0.522 4.522 7 H 0.055 0.945 8 C 0.087 3.913 9 N -0.849 5.849 10 Si 0.885 3.115 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.275 1.275 14 C -0.134 4.134 15 S 0.075 5.925 16 C -0.251 4.251 17 C -0.119 4.119 18 C -0.151 4.151 19 C -0.081 4.081 20 H 0.042 0.958 21 H 0.062 0.938 22 H 0.042 0.958 23 H 0.002 0.998 24 H 0.064 0.936 25 H 0.311 0.689 26 H 0.256 0.744 27 H 0.151 0.849 28 H 0.126 0.874 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 -4.294 -7.671 8.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 N -0.273 5.273 4 C 0.170 3.830 5 H 0.076 0.924 6 C -0.561 4.561 7 H 0.073 0.927 8 C -0.119 4.119 9 N -0.483 5.483 10 Si 0.713 3.287 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.200 1.200 14 C -0.254 4.254 15 S 0.339 5.661 16 C -0.386 4.386 17 C -0.150 4.150 18 C -0.162 4.162 19 C -0.141 4.141 20 H 0.061 0.939 21 H 0.081 0.919 22 H 0.061 0.939 23 H 0.020 0.980 24 H 0.083 0.917 25 H 0.129 0.871 26 H 0.066 0.934 27 H 0.169 0.831 28 H 0.144 0.856 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.074 -3.169 -7.162 7.832 hybrid contribution 1.651 -0.344 -0.337 1.720 sum 1.725 -3.513 -7.498 8.458 Atomic orbital electron populations 1.21708 0.96663 0.99813 1.01758 1.21828 0.94427 0.92401 0.98563 1.61072 1.12476 1.10960 1.42833 1.18106 0.82815 0.98873 0.83253 0.92361 1.20833 1.30664 1.02944 1.01679 0.92694 1.24880 0.94114 0.96335 0.96621 1.70055 1.31041 1.35510 1.11738 0.86733 0.79010 0.84806 0.78172 1.20648 1.21323 1.20016 1.26377 1.00542 0.97460 1.00992 1.84069 1.35530 1.45230 1.01235 1.25328 1.04283 1.06011 1.02983 1.19968 1.01179 1.00670 0.93226 1.18776 0.99759 1.02794 0.94886 1.20373 1.00131 0.96917 0.96644 0.93854 0.91881 0.93927 0.98012 0.91703 0.87127 0.93394 0.83114 0.85609 0.91772 0.91470 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 10.22 37.16 0.38 -2.12 16 2 C 0.06 1.19 6.22 -3.83 -0.02 1.16 16 3 N -0.64 -15.10 5.52 -109.20 -0.60 -15.70 16 4 C 0.28 6.81 2.13 -70.02 -0.15 6.66 16 5 H 0.06 1.53 5.84 -51.93 -0.30 1.23 16 6 C -0.52 -14.16 8.75 -34.44 -0.30 -14.47 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 8 C 0.09 2.39 5.39 -17.82 -0.10 2.30 16 9 N -0.85 -23.95 12.77 55.43 0.71 -23.25 16 10 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C -0.13 -2.89 5.13 -36.00 -0.18 -3.07 16 15 S 0.08 1.43 22.23 -107.50 -2.39 -0.96 16 16 C -0.25 -4.17 11.23 29.04 0.33 -3.85 16 17 C -0.12 -2.03 9.98 -41.21 -0.41 -2.44 16 18 C -0.15 -2.95 5.80 -106.25 -0.62 -3.57 16 19 C -0.08 -1.42 9.81 36.01 0.35 -1.06 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.00 0.04 8.08 -51.93 -0.42 -0.38 16 24 H 0.06 1.41 7.93 -51.93 -0.41 0.99 16 25 H 0.31 7.05 7.55 -39.29 -0.30 6.76 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 27 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.24 6.51 -51.93 -0.34 0.90 16 31 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 LS Contribution 274.80 15.07 4.14 4.14 Total: -1.00 -28.30 274.80 -8.16 -36.45 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.27 Total: 3.56 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -0.72 Total: -20.46 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.11 Total: -38.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.39 Total: -0.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.30 -8.16 -36.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157595.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.055 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds