Wall clock time and date at job start Mon Mar 30 2020 03:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.47194 * 2 1 4 4 C 1.46897 * 111.00228 * 174.81920 * 3 2 1 5 5 H 1.08992 * 109.46875 * 324.69234 * 4 3 2 6 6 C 1.50697 * 109.47445 * 204.68539 * 4 3 2 7 7 H 1.07999 * 120.00332 * 239.99767 * 6 4 3 8 8 C 1.37882 * 119.99545 * 60.00008 * 6 4 3 9 9 N 1.31508 * 119.99995 * 0.02562 * 8 6 4 10 10 Si 1.86807 * 119.99855 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46999 * 89.99951 * 10 8 6 12 12 H 1.48497 * 109.47120 * 210.00093 * 10 8 6 13 13 H 1.48500 * 109.46981 * 330.00016 * 10 8 6 14 14 C 1.50706 * 109.47078 * 84.68833 * 4 3 2 15 15 S 1.75886 * 125.20209 * 46.06962 * 14 4 3 16 16 C 1.75885 * 90.96717 * 180.02562 * 15 14 4 17 17 C 1.33387 * 109.60002 * 0.02562 * 16 15 14 18 18 C 1.33386 * 125.20209 * 226.11748 * 14 4 3 19 19 C 1.50701 * 122.54004 * 359.97438 * 18 14 4 20 20 H 1.08992 * 109.47211 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47139 * 300.00895 * 1 2 3 22 22 H 1.09000 * 109.46983 * 60.00192 * 1 2 3 23 23 H 1.08997 * 109.47190 * 239.99717 * 2 1 3 24 24 H 1.08995 * 109.46639 * 119.99514 * 2 1 3 25 25 H 1.00906 * 111.00158 * 298.77388 * 3 2 1 26 26 H 0.97005 * 120.00032 * 180.02562 * 9 8 6 27 27 H 1.08002 * 125.20005 * 180.02562 * 16 15 14 28 28 H 1.07990 * 122.54408 * 180.26732 * 17 16 15 29 29 H 1.09000 * 109.47027 * 270.00544 * 19 18 14 30 30 H 1.08999 * 109.46813 * 30.00665 * 19 18 14 31 31 H 1.09002 * 109.47131 * 150.00273 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4829 1.4260 0.1238 5 1 3.8154 0.6162 0.7731 6 6 3.9001 2.7478 0.7153 7 1 4.5520 3.4061 0.1604 8 6 3.4495 3.1166 1.9652 9 7 2.6561 2.3147 2.6412 10 14 3.9672 4.7547 2.6988 11 1 2.9891 5.8024 2.3101 12 1 4.0105 4.6426 4.1789 13 1 5.3135 5.1213 2.1906 14 6 4.1070 1.2661 -1.2386 15 16 3.6015 2.1183 -2.6918 16 6 4.8403 1.3025 -3.6370 17 6 5.5312 0.4758 -2.8506 18 6 5.1266 0.4559 -1.5269 19 6 5.7878 -0.4155 -0.4902 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 1.7127 1.8770 -0.8257 26 1 2.3389 2.5743 3.5204 27 1 5.0149 1.4487 -4.6927 28 1 6.3476 -0.1284 -3.2176 29 1 6.6089 0.1312 -0.0264 30 1 5.0585 -0.6910 0.2715 31 1 6.1743 -1.3168 -0.9661 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157595.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:02 Heat of formation + Delta-G solvation = 8.697353 kcal Electronic energy + Delta-G solvation = -13664.783820 eV Core-core repulsion = 11457.823014 eV Total energy + Delta-G solvation = -2206.960806 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.44625 -37.16417 -34.44552 -32.45041 -30.90963 -28.30355 -27.33022 -24.29207 -23.05121 -22.42335 -19.22322 -18.48500 -17.96867 -16.44183 -16.30028 -15.60569 -15.27095 -15.05231 -14.46929 -14.10793 -14.08121 -13.28117 -12.99161 -12.96815 -12.79038 -12.67025 -12.58038 -12.43075 -12.36609 -12.00603 -11.69291 -11.46110 -11.13489 -10.49645 -9.32608 -9.11453 -8.73771 -7.95665 -6.15289 0.29746 0.91097 1.31605 1.43170 1.44872 1.53435 1.94619 2.49098 3.24201 3.94189 4.18344 4.27330 4.32104 4.57946 4.59198 4.70227 4.73011 4.81888 4.89481 4.98495 5.09173 5.20790 5.25797 5.34844 5.42104 5.75870 5.77488 5.80190 6.20548 6.61918 6.94127 7.12390 7.55060 9.06949 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.011505 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.403662 B = 2433.167981 C = 2970.671772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 N -0.661 5.661 4 C 0.288 3.712 5 H 0.028 0.972 6 C -0.535 4.535 7 H 0.041 0.959 8 C 0.043 3.957 9 N -0.876 5.876 10 Si 0.943 3.057 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.273 1.273 14 C -0.181 4.181 15 S 0.062 5.938 16 C -0.227 4.227 17 C -0.128 4.128 18 C -0.148 4.148 19 C -0.081 4.081 20 H 0.072 0.928 21 H 0.045 0.955 22 H 0.053 0.947 23 H 0.009 0.991 24 H 0.043 0.957 25 H 0.314 0.686 26 H 0.256 0.744 27 H 0.190 0.810 28 H 0.162 0.838 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 -4.590 -9.462 10.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.067 4.067 3 N -0.291 5.291 4 C 0.178 3.822 5 H 0.046 0.954 6 C -0.574 4.574 7 H 0.060 0.940 8 C -0.161 4.161 9 N -0.512 5.512 10 Si 0.769 3.231 11 H -0.205 1.205 12 H -0.208 1.208 13 H -0.198 1.198 14 C -0.300 4.300 15 S 0.326 5.674 16 C -0.362 4.362 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.140 4.140 20 H 0.091 0.909 21 H 0.064 0.936 22 H 0.072 0.928 23 H 0.027 0.973 24 H 0.062 0.938 25 H 0.131 0.869 26 H 0.065 0.935 27 H 0.207 0.793 28 H 0.180 0.820 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.758 -3.464 -8.955 9.632 hybrid contribution 1.493 -0.305 0.131 1.530 sum 2.251 -3.769 -8.824 9.856 Atomic orbital electron populations 1.21626 0.94216 1.01651 1.01449 1.21784 0.96346 0.90787 0.97790 1.60911 1.12253 1.12744 1.43143 1.17640 0.83524 0.96336 0.84679 0.95440 1.21090 1.30324 1.04053 1.01942 0.94045 1.25539 0.94278 0.99237 0.97071 1.70166 1.32191 1.36935 1.11933 0.85823 0.78536 0.81195 0.77514 1.20483 1.20813 1.19829 1.26011 1.02705 1.00450 1.00824 1.84015 1.36960 1.45753 1.00717 1.25794 1.02004 1.04004 1.04380 1.20243 1.02308 1.01445 0.91904 1.19219 0.98564 1.01641 0.96555 1.20402 0.99414 0.98092 0.96115 0.90939 0.93569 0.92754 0.97300 0.93793 0.86901 0.93541 0.79306 0.82032 0.91857 0.93538 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 10.22 71.98 0.74 -3.81 16 2 C 0.06 2.61 6.22 86.31 0.54 3.14 16 3 N -0.66 -31.74 5.52 -499.39 -2.75 -34.49 16 4 C 0.29 14.48 2.13 43.42 0.09 14.57 16 5 H 0.03 1.54 5.84 -2.39 -0.01 1.52 16 6 C -0.53 -29.81 8.75 25.60 0.22 -29.59 16 7 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 8 C 0.04 2.38 5.39 84.66 0.46 2.84 16 9 N -0.88 -50.77 12.77 21.45 0.27 -50.50 16 10 Si 0.94 44.30 29.54 68.60 2.03 46.32 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 14 C -0.18 -7.79 5.13 24.59 0.13 -7.66 16 15 S 0.06 2.28 22.23 -56.49 -1.26 1.02 16 16 C -0.23 -6.73 11.23 66.72 0.75 -5.98 16 17 C -0.13 -3.95 9.98 21.22 0.21 -3.74 16 18 C -0.15 -5.58 5.80 -20.92 -0.12 -5.70 16 19 C -0.08 -2.76 9.81 71.24 0.70 -2.06 16 20 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 21 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 22 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 24 H 0.04 1.98 7.93 -2.39 -0.02 1.96 16 25 H 0.31 14.47 7.55 -89.69 -0.68 13.79 16 26 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 27 H 0.19 4.13 8.06 -2.91 -0.02 4.10 16 28 H 0.16 3.81 8.06 -2.92 -0.02 3.78 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.05 1.75 6.51 -2.39 -0.02 1.74 16 31 H 0.08 2.27 8.13 -2.39 -0.02 2.25 16 Total: -1.00 -61.66 274.80 2.44 -59.22 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.44 Total: 16.41 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 3.71 Total: -37.98 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -2.48 Total: -84.99 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.26 Total: 1.02 kcal Total: -61.66 2.44 -59.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157595.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.922 kcal (2) G-P(sol) polarization free energy of solvation -61.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds