Wall clock time and date at job start Mon Mar 30 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46626 * 2 1 4 4 C 1.46905 * 110.99800 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47172 * 34.99697 * 4 3 2 6 6 C 1.50695 * 109.47374 * 154.99628 * 4 3 2 7 7 H 1.08005 * 120.00101 * 359.97438 * 6 4 3 8 8 C 1.37877 * 120.00330 * 180.02562 * 6 4 3 9 9 N 1.31517 * 119.99694 * 359.97438 * 8 6 4 10 10 Si 1.86796 * 120.00088 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47216 * 89.99981 * 10 8 6 12 12 H 1.48501 * 109.47013 * 209.99916 * 10 8 6 13 13 H 1.48500 * 109.47359 * 329.99835 * 10 8 6 14 14 C 1.50696 * 109.47140 * 275.00279 * 4 3 2 15 15 S 1.75891 * 125.19966 * 315.02211 * 14 4 3 16 16 C 1.75885 * 90.96690 * 179.97438 * 15 14 4 17 17 C 1.33380 * 109.59700 * 359.97438 * 16 15 14 18 18 C 1.33383 * 125.20773 * 134.71867 * 14 4 3 19 19 C 1.50707 * 122.53745 * 0.02562 * 18 14 4 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 300.00347 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00176 * 1 2 3 23 23 H 1.09000 * 109.47050 * 119.99824 * 2 1 3 24 24 H 1.09001 * 109.46801 * 239.99937 * 2 1 3 25 25 H 1.00898 * 110.99915 * 303.94815 * 3 2 1 26 26 H 0.97003 * 119.99851 * 179.97438 * 9 8 6 27 27 H 1.08000 * 125.19664 * 179.97438 * 16 15 14 28 28 H 1.08000 * 122.54237 * 180.02562 * 17 16 15 29 29 H 1.09004 * 109.47130 * 90.00021 * 19 18 14 30 30 H 1.08995 * 109.46765 * 210.00163 * 19 18 14 31 31 H 1.08998 * 109.46972 * 330.00164 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 0.0006 5 1 3.8741 0.5924 -0.5885 6 6 3.9562 2.7248 -0.5999 7 1 3.2349 3.4496 -0.9477 8 6 5.3052 2.9890 -0.7064 9 7 6.1835 2.1063 -0.2833 10 14 5.8853 4.6014 -1.4501 11 1 6.0234 5.6197 -0.3781 12 1 7.1993 4.3972 -2.1111 13 1 4.8944 5.0691 -2.4524 14 6 3.9930 1.3141 1.4162 15 16 3.3480 2.1965 2.7943 16 6 4.5125 1.4311 3.8674 17 6 5.2832 0.5962 3.1687 18 6 4.9935 0.5282 1.8168 19 6 5.7534 -0.3634 0.8688 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.6441 1.9013 -0.7814 26 1 7.1326 2.2920 -0.3585 27 1 4.5914 1.6098 4.9295 28 1 6.0712 0.0146 3.6239 29 1 6.6051 0.1815 0.4614 30 1 6.1079 -1.2443 1.4039 31 1 5.0969 -0.6722 0.0554 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:03 Heat of formation + Delta-G solvation = 10.819865 kcal Electronic energy + Delta-G solvation = -13853.990724 eV Core-core repulsion = 11647.121957 eV Total energy + Delta-G solvation = -2206.868767 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.20439 -37.12809 -34.72089 -32.09072 -30.87668 -28.31752 -27.10506 -24.19301 -23.10507 -22.23229 -18.95122 -18.67988 -17.35659 -16.71208 -16.19058 -15.73384 -15.35069 -14.94863 -14.36142 -14.03558 -13.65414 -13.34415 -13.07479 -12.85642 -12.58384 -12.53936 -12.35500 -12.29209 -12.22889 -11.93981 -11.72703 -11.26880 -11.18896 -10.59492 -9.13957 -8.98700 -8.66632 -8.01672 -6.23329 0.64492 1.26059 1.41502 1.44347 1.51489 1.68047 2.31284 2.43428 3.19622 3.68811 4.29017 4.39519 4.47430 4.62549 4.75080 4.83251 4.91767 5.00826 5.06121 5.17839 5.18166 5.31761 5.44547 5.55040 5.63113 5.74677 5.95175 6.12569 6.23498 6.46447 6.78025 6.96620 7.46312 8.94088 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.013659 C = 0.010453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.209189 B = 2049.491257 C = 2678.018466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.057 3.943 3 N -0.689 5.689 4 C 0.278 3.722 5 H -0.002 1.002 6 C -0.542 4.542 7 H 0.058 0.942 8 C 0.031 3.969 9 N -0.877 5.877 10 Si 0.949 3.051 11 H -0.284 1.284 12 H -0.283 1.283 13 H -0.270 1.270 14 C -0.092 4.092 15 S 0.062 5.938 16 C -0.257 4.257 17 C -0.132 4.132 18 C -0.137 4.137 19 C -0.058 4.058 20 H 0.073 0.927 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.015 0.985 25 H 0.338 0.662 26 H 0.260 0.740 27 H 0.177 0.823 28 H 0.143 0.857 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -3.550 3.468 6.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.073 4.073 3 N -0.321 5.321 4 C 0.167 3.833 5 H 0.016 0.984 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.172 4.172 9 N -0.513 5.513 10 Si 0.776 3.224 11 H -0.211 1.211 12 H -0.209 1.209 13 H -0.195 1.195 14 C -0.210 4.210 15 S 0.326 5.674 16 C -0.392 4.392 17 C -0.164 4.164 18 C -0.147 4.147 19 C -0.117 4.117 20 H 0.092 0.908 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.033 0.967 25 H 0.156 0.844 26 H 0.069 0.931 27 H 0.194 0.806 28 H 0.160 0.840 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.353 -2.463 4.377 7.341 hybrid contribution 2.013 -0.329 -1.490 2.526 sum -3.340 -2.792 2.888 5.224 Atomic orbital electron populations 1.21676 0.93115 1.02265 1.02206 1.21894 0.96801 0.89839 0.98754 1.60527 1.08982 1.13054 1.49525 1.17498 0.83545 0.95582 0.86645 0.98446 1.21320 0.92266 1.03411 1.41078 0.92361 1.25567 0.96991 0.99307 0.95372 1.70135 1.01370 1.34643 1.45139 0.85696 0.77644 0.80614 0.78445 1.21053 1.20882 1.19480 1.24663 1.00368 0.97653 0.98357 1.83747 1.36629 1.47331 0.99727 1.25603 1.03930 1.06026 1.03652 1.20143 1.01505 1.01416 0.93308 1.18807 0.98882 1.02633 0.94411 1.20276 0.99846 0.95837 0.95782 0.90834 0.92409 0.92331 0.93281 0.96716 0.84366 0.93109 0.80611 0.83984 0.90278 0.93258 0.95163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 10.17 71.98 0.73 -2.96 16 2 C 0.06 2.03 6.20 86.31 0.54 2.57 16 3 N -0.69 -28.95 6.15 -499.34 -3.07 -32.03 16 4 C 0.28 13.67 2.28 43.42 0.10 13.77 16 5 H 0.00 -0.09 5.93 -2.38 -0.01 -0.11 16 6 C -0.54 -28.77 8.58 25.60 0.22 -28.55 16 7 H 0.06 3.08 7.62 -2.91 -0.02 3.06 16 8 C 0.03 1.63 5.30 84.65 0.45 2.07 16 9 N -0.88 -46.95 8.68 21.45 0.19 -46.76 16 10 Si 0.95 42.83 29.54 68.60 2.03 44.85 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 C -0.09 -4.41 4.40 24.59 0.11 -4.30 16 15 S 0.06 2.68 23.17 -56.49 -1.31 1.37 16 16 C -0.26 -9.78 11.23 66.72 0.75 -9.03 16 17 C -0.13 -5.30 9.98 21.21 0.21 -5.09 16 18 C -0.14 -6.26 5.03 -20.92 -0.11 -6.36 16 19 C -0.06 -2.55 8.93 71.24 0.64 -1.91 16 20 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.05 1.88 8.00 -2.39 -0.02 1.86 16 24 H 0.01 0.53 8.06 -2.39 -0.02 0.51 16 25 H 0.34 13.72 8.22 -89.70 -0.74 12.98 16 26 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 27 H 0.18 5.35 8.06 -2.91 -0.02 5.32 16 28 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 29 H 0.08 3.75 6.04 -2.38 -0.01 3.73 16 30 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 31 H 0.03 1.37 6.50 -2.39 -0.02 1.35 16 Total: -1.00 -56.74 268.31 1.85 -54.89 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.38 Total: 17.46 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 3.63 Total: -39.79 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.89 Total: -78.79 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.31 Total: 1.37 kcal Total: -56.74 1.85 -54.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.712 kcal (2) G-P(sol) polarization free energy of solvation -56.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds