Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33381 * 122.53886 * 2 1 4 4 S 1.75881 * 109.59324 * 180.02562 * 3 2 1 5 5 C 1.75888 * 90.97249 * 359.82714 * 4 3 2 6 6 C 1.50694 * 125.20705 * 180.17900 * 5 4 3 7 7 C 1.33388 * 109.58898 * 0.30653 * 5 4 3 8 8 C 1.50700 * 122.54016 * 179.90762 * 7 5 4 9 9 H 1.09002 * 109.47569 * 187.36319 * 8 7 5 10 10 C 1.50700 * 109.46953 * 307.36300 * 8 7 5 11 11 H 1.08006 * 119.99631 * 359.97438 * 10 8 7 12 12 C 1.37878 * 120.00548 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99527 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 120.00383 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46921 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47011 * 119.99519 * 14 12 10 17 17 H 1.48503 * 109.47069 * 239.99853 * 14 12 10 18 18 C 1.53000 * 109.47229 * 67.36013 * 8 7 5 19 19 N 1.46893 * 109.47420 * 65.91524 * 18 8 7 20 20 H 1.08999 * 109.47624 * 269.97536 * 1 2 3 21 21 H 1.08998 * 109.47111 * 29.98397 * 1 2 3 22 22 H 1.09002 * 109.47006 * 149.97440 * 1 2 3 23 23 H 1.07995 * 125.20647 * 0.05339 * 3 2 1 24 24 H 1.08997 * 109.47600 * 276.16779 * 6 5 4 25 25 H 1.09001 * 109.47205 * 36.16327 * 6 5 4 26 26 H 1.08996 * 109.47050 * 156.16037 * 6 5 4 27 27 H 0.97003 * 120.00202 * 180.02562 * 13 12 10 28 28 H 1.08999 * 109.47048 * 305.91130 * 18 8 7 29 29 H 1.09006 * 109.46822 * 185.91442 * 18 8 7 30 30 H 1.00893 * 111.00681 * 180.02562 * 19 18 8 31 31 H 1.00907 * 110.99829 * 303.95878 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2244 1.1244 0.0000 4 16 3.9385 0.7304 -0.0007 5 6 3.5737 -0.9902 0.0043 6 6 4.5979 -2.0955 0.0100 7 6 2.2516 -1.1670 -0.0006 8 6 1.6165 -2.5336 -0.0001 9 1 0.5396 -2.4340 -0.1363 10 6 2.1912 -3.3550 -1.1253 11 1 2.9411 -2.9297 -1.7759 12 6 1.7592 -4.6490 -1.3248 13 7 0.8457 -5.1667 -0.5328 14 14 2.4721 -5.6673 -2.7191 15 1 3.4759 -4.8603 -3.4584 16 1 3.1239 -6.8803 -2.1631 17 1 1.3830 -6.0707 -3.6446 18 6 1.8998 -3.2272 1.3339 19 7 1.2200 -2.5034 2.4163 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8901 -0.5136 22 1 -0.3633 -0.8898 -0.5142 23 1 1.8154 2.1239 0.0008 24 1 4.9280 -2.2904 -1.0103 25 1 5.4522 -1.7961 0.6172 26 1 4.1546 -2.9995 0.4275 27 1 0.5419 -6.0772 -0.6729 28 1 2.9739 -3.2332 1.5194 29 1 1.5320 -4.2526 1.2956 30 1 1.3921 -2.9419 3.3085 31 1 1.4961 -1.5329 2.4315 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261250696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = 2.394753 kcal Electronic energy + Delta-G solvation = -13976.460156 eV Core-core repulsion = 11769.226048 eV Total energy + Delta-G solvation = -2207.234107 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.08807 -36.19355 -34.05452 -33.36513 -30.39499 -28.99567 -27.16825 -25.61106 -22.80417 -21.49533 -18.86476 -18.54140 -17.63574 -16.67666 -16.34695 -15.50493 -15.27562 -14.79469 -14.28480 -14.07895 -13.75025 -13.69174 -13.45960 -12.99400 -12.82231 -12.61856 -12.40716 -12.25973 -12.21689 -11.90147 -11.77174 -11.17486 -10.93611 -10.43351 -9.26857 -9.09704 -8.89249 -8.03663 -6.15725 0.29638 0.95377 1.25474 1.40246 1.44077 1.53573 2.02976 2.46989 3.21979 4.13471 4.15888 4.29183 4.55708 4.60118 4.74364 4.77252 4.84777 4.93136 5.02758 5.10680 5.20556 5.39267 5.53230 5.63706 5.72405 5.78752 6.04222 6.17581 6.36519 6.64089 6.82262 6.97765 7.50271 8.99485 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.010780 C = 0.009599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.051901 B = 2596.725543 C = 2916.251387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.104 4.104 3 C -0.223 4.223 4 S 0.066 5.934 5 C -0.190 4.190 6 C -0.073 4.073 7 C -0.088 4.088 8 C 0.107 3.893 9 H 0.015 0.985 10 C -0.510 4.510 11 H 0.052 0.948 12 C 0.018 3.982 13 N -0.912 5.912 14 Si 0.944 3.056 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.285 1.285 18 C 0.076 3.924 19 N -0.848 5.848 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.046 0.954 23 H 0.185 0.815 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.259 0.741 28 H 0.006 0.994 29 H 0.072 0.928 30 H 0.334 0.666 31 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.283 9.482 2.728 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.358 4.358 4 S 0.331 5.669 5 C -0.306 4.306 6 C -0.132 4.132 7 C -0.099 4.099 8 C 0.086 3.914 9 H 0.033 0.967 10 C -0.549 4.549 11 H 0.070 0.930 12 C -0.181 4.181 13 N -0.552 5.552 14 Si 0.771 3.229 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.211 1.211 18 C -0.054 4.054 19 N -0.377 5.377 20 H 0.092 0.908 21 H 0.099 0.901 22 H 0.065 0.935 23 H 0.202 0.798 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.091 0.909 30 H 0.145 0.855 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.885 10.016 2.356 11.390 hybrid contribution -0.171 -1.547 -0.441 1.618 sum 4.714 8.469 1.915 9.880 Atomic orbital electron populations 1.20470 0.89525 1.02043 1.02429 1.19071 0.98121 0.91816 1.02683 1.25468 0.95119 1.02372 1.12836 1.83528 1.07179 1.00075 1.76098 1.24259 0.97810 0.97260 1.11280 1.20406 0.95365 0.95644 1.01780 1.19295 0.92728 0.97227 1.00694 1.17402 0.94601 0.86767 0.92591 0.96680 1.21415 1.22478 0.97633 1.13409 0.92957 1.25619 0.95411 0.98930 0.98165 1.70029 1.30779 1.15417 1.38933 0.85711 0.78347 0.78905 0.79970 1.19377 1.20614 1.21148 1.21885 0.93223 0.99454 0.90881 1.58808 1.65746 1.06106 1.07038 0.90775 0.90148 0.93466 0.79789 0.92070 0.91222 0.90524 0.93136 0.97564 0.90937 0.85481 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.86 9.71 71.24 0.69 -2.17 16 2 C -0.10 -3.81 5.77 -20.92 -0.12 -3.93 16 3 C -0.22 -6.87 10.98 66.72 0.73 -6.14 16 4 S 0.07 2.06 23.33 -56.49 -1.32 0.75 16 5 C -0.19 -7.33 6.09 24.59 0.15 -7.18 16 6 C -0.07 -2.72 8.62 71.23 0.61 -2.11 16 7 C -0.09 -3.72 3.72 -20.92 -0.08 -3.79 16 8 C 0.11 5.27 1.98 -12.29 -0.02 5.25 16 9 H 0.02 0.84 6.02 -2.39 -0.01 0.83 16 10 C -0.51 -27.15 6.80 25.60 0.17 -26.98 16 11 H 0.05 2.80 6.59 -2.91 -0.02 2.78 16 12 C 0.02 0.94 5.29 84.65 0.45 1.39 16 13 N -0.91 -51.61 11.29 21.45 0.24 -51.37 16 14 Si 0.94 43.05 29.54 68.60 2.03 45.08 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 18 C 0.08 3.56 5.88 86.30 0.51 4.07 16 19 N -0.85 -33.68 9.62 -186.73 -1.80 -35.48 16 20 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 21 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16 22 H 0.05 1.85 6.44 -2.39 -0.02 1.84 16 23 H 0.18 4.35 8.06 -2.91 -0.02 4.32 16 24 H 0.06 2.28 7.81 -2.39 -0.02 2.26 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.08 3.19 4.38 -2.39 -0.01 3.18 16 27 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.01 0.29 5.41 -2.39 -0.01 0.28 16 29 H 0.07 3.91 5.94 -2.38 -0.01 3.89 16 30 H 0.33 11.53 9.08 -89.70 -0.81 10.71 16 31 H 0.33 12.30 8.08 -89.69 -0.72 11.58 16 Total: -1.00 -58.31 260.46 1.87 -56.43 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.38 Total: 26.19 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 3.09 Total: -41.60 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -1.55 Total: -86.85 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.75 kcal Total: -58.31 1.87 -56.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261250696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.830 kcal (2) G-P(sol) polarization free energy of solvation -58.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds