Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47064 * 2 1 4 4 C 1.50695 * 109.47191 * 120.00052 * 2 1 3 5 5 C 1.33388 * 125.20541 * 120.28786 * 4 2 1 6 6 C 1.38420 * 114.92135 * 180.20551 * 5 4 2 7 7 C 1.50710 * 122.53804 * 179.75844 * 6 5 4 8 8 H 1.08991 * 109.46914 * 19.74137 * 7 6 5 9 9 N 1.46899 * 109.46580 * 139.73880 * 7 6 5 10 10 C 1.50693 * 109.47130 * 259.73964 * 7 6 5 11 11 H 1.08009 * 120.00412 * 354.82966 * 10 7 6 12 12 C 1.37877 * 119.99997 * 174.83453 * 10 7 6 13 13 N 1.31517 * 120.00178 * 164.31455 * 12 10 7 14 14 Si 1.86801 * 120.00071 * 344.31190 * 12 10 7 15 15 H 1.48492 * 109.47454 * 180.02562 * 14 12 10 16 16 H 1.48502 * 109.47014 * 300.00360 * 14 12 10 17 17 H 1.48502 * 109.46954 * 59.99726 * 14 12 10 18 18 C 1.33388 * 114.92269 * 359.49684 * 6 5 4 19 19 S 1.75877 * 109.59275 * 0.26656 * 18 6 5 20 20 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47519 * 300.00147 * 1 2 3 22 22 H 1.09000 * 109.47171 * 59.99849 * 1 2 3 23 23 H 1.09000 * 109.46989 * 240.00321 * 2 1 3 24 24 H 1.08992 * 109.46899 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46773 * 300.00251 * 3 2 1 26 26 H 1.09004 * 109.46998 * 59.99788 * 3 2 1 27 27 H 1.08002 * 122.53920 * 359.97097 * 5 4 2 28 28 H 1.00902 * 111.00363 * 54.23945 * 9 7 6 29 29 H 1.00903 * 110.99349 * 178.18170 * 9 7 6 30 30 H 0.96997 * 119.99858 * 354.90488 * 13 12 10 31 31 H 1.08002 * 125.20233 * 180.24519 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8069 -1.7963 1.2290 6 6 3.1397 -2.2770 2.4837 7 6 4.0019 -3.4971 2.6819 8 1 4.5702 -3.6920 1.7725 9 7 4.9283 -3.2658 3.7982 10 6 3.1278 -4.6848 2.9922 11 1 2.0639 -4.5527 3.1237 12 6 3.6862 -5.9400 3.1085 13 7 3.0047 -6.9132 3.6726 14 14 5.4106 -6.2585 2.4648 15 1 5.7759 -7.6770 2.7085 16 1 5.4539 -5.9802 1.0068 17 1 6.3727 -5.3714 3.1668 18 6 2.6441 -1.5752 3.5041 19 16 1.6933 -0.2300 2.8881 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.1454 -2.2672 0.3179 28 1 4.4295 -2.9908 4.6311 29 1 5.4975 -4.0810 3.9704 30 1 2.1401 -6.7312 4.0728 31 1 2.8022 -1.7992 4.5488 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = 12.145968 kcal Electronic energy + Delta-G solvation = -13303.132914 eV Core-core repulsion = 11096.321651 eV Total energy + Delta-G solvation = -2206.811263 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.15068 -35.69996 -33.54125 -31.54929 -27.97509 -27.12479 -26.18414 -23.63936 -21.70377 -19.87485 -18.02910 -17.65085 -16.57438 -15.15846 -14.83084 -14.03616 -13.81442 -13.48974 -13.00815 -12.66824 -12.55665 -12.31373 -12.10288 -11.73119 -11.57496 -11.22507 -11.02984 -11.00618 -10.67483 -10.42331 -10.09527 -9.85458 -9.32012 -8.53032 -8.00741 -7.82257 -7.44260 -6.48056 -4.23901 1.64925 2.22529 2.60940 3.29185 3.36748 3.52521 3.54183 4.37275 4.81493 5.00366 5.14797 5.21298 5.54322 5.61272 5.81489 5.82488 5.86343 5.93280 6.04483 6.19432 6.23275 6.27361 6.37597 6.76031 6.79202 7.05938 7.45548 7.82522 8.20479 8.38679 8.50005 8.82615 9.47341 10.79859 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.040880 B = 0.007413 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.764100 B = 3776.287263 C = 3859.285762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.022 4.022 3 C -0.144 4.144 4 C -0.179 4.179 5 C -0.120 4.120 6 C -0.042 4.042 7 C 0.230 3.770 8 H 0.043 0.957 9 N -0.856 5.856 10 C -0.624 4.624 11 H 0.057 0.943 12 C 0.032 3.968 13 N -0.899 5.899 14 Si 1.043 2.957 15 H -0.284 1.284 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.210 4.210 19 S 0.040 5.960 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.132 0.868 28 H 0.323 0.677 29 H 0.331 0.669 30 H 0.269 0.731 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 13.349 -5.202 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.042 4.042 3 C -0.202 4.202 4 C -0.296 4.296 5 C -0.151 4.151 6 C -0.053 4.053 7 C 0.118 3.882 8 H 0.061 0.939 9 N -0.387 5.387 10 C -0.663 4.663 11 H 0.075 0.925 12 C -0.174 4.174 13 N -0.532 5.532 14 Si 0.871 3.129 15 H -0.210 1.210 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.345 4.345 19 S 0.303 5.697 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.079 0.921 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.971 13.900 -5.197 14.872 hybrid contribution -1.024 -0.907 0.146 1.376 sum -1.995 12.994 -5.051 14.083 Atomic orbital electron populations 1.21886 0.94481 1.02298 1.01592 1.19627 0.95553 0.95345 0.93680 1.21883 1.01500 0.95155 1.01617 1.24223 1.06502 1.02028 0.96848 1.20049 1.00118 0.96216 0.98729 1.19047 0.98292 0.96793 0.91200 1.18040 0.89429 0.89146 0.91583 0.93905 1.59838 1.27483 1.41454 1.09887 1.22646 0.96073 0.93484 1.54139 0.92488 1.25852 1.05073 0.92287 0.94230 1.70828 1.14930 1.34776 1.32701 0.84023 0.75389 0.76306 0.77178 1.20981 1.20793 1.19811 1.25051 1.06459 1.00191 1.02755 1.83654 1.54655 1.32039 0.99378 0.92223 0.92572 0.92446 0.89845 0.92298 0.92466 0.92565 0.84997 0.86614 0.85475 0.92087 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.12 37.16 0.34 -1.38 16 2 C -0.02 -0.28 3.30 -91.77 -0.30 -0.58 16 3 C -0.14 -1.62 9.12 37.16 0.34 -1.28 16 4 C -0.18 -2.99 5.09 -36.01 -0.18 -3.18 16 5 C -0.12 -2.32 9.78 -41.21 -0.40 -2.72 16 6 C -0.04 -0.91 4.80 -106.24 -0.51 -1.42 16 7 C 0.23 5.51 2.58 -70.02 -0.18 5.33 16 8 H 0.04 1.05 6.80 -51.93 -0.35 0.70 16 9 N -0.86 -19.07 9.15 -6.65 -0.06 -19.13 16 10 C -0.62 -17.30 9.05 -34.44 -0.31 -17.61 16 11 H 0.06 1.75 7.99 -52.48 -0.42 1.33 16 12 C 0.03 0.90 5.38 -17.82 -0.10 0.80 16 13 N -0.90 -27.12 13.70 55.43 0.76 -26.36 16 14 Si 1.04 24.47 26.42 -169.99 -4.49 19.97 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.27 -5.83 5.69 56.52 0.32 -5.51 16 18 C -0.21 -4.18 10.37 29.04 0.30 -3.88 16 19 S 0.04 0.66 22.90 -107.50 -2.46 -1.80 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16 27 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 28 H 0.32 6.88 7.51 -39.29 -0.30 6.58 16 29 H 0.33 7.44 5.50 -39.29 -0.22 7.23 16 30 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 31 H 0.15 2.97 7.08 -52.49 -0.37 2.60 16 LS Contribution 268.98 15.07 4.05 4.05 Total: -1.00 -29.41 268.98 -7.46 -36.88 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -4.25 Total: 12.31 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -1.01 Total: -25.92 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.70 Total: -45.49 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.49 Total: 19.97 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.46 Total: -1.80 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.41 -7.46 -36.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.022 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds