Wall clock time and date at job start Mon Mar 30 2020 02:49:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53007 * 109.47064 * 2 1
4 4 C 1.50695 * 109.47191 * 120.00052 * 2 1 3
5 5 C 1.33388 * 125.20541 * 120.28786 * 4 2 1
6 6 C 1.38420 * 114.92135 * 180.20551 * 5 4 2
7 7 C 1.50710 * 122.53804 * 179.75844 * 6 5 4
8 8 H 1.08991 * 109.46914 * 19.74137 * 7 6 5
9 9 N 1.46899 * 109.46580 * 139.73880 * 7 6 5
10 10 C 1.50693 * 109.47130 * 259.73964 * 7 6 5
11 11 H 1.08009 * 120.00412 * 354.82966 * 10 7 6
12 12 C 1.37877 * 119.99997 * 174.83453 * 10 7 6
13 13 N 1.31517 * 120.00178 * 164.31455 * 12 10 7
14 14 Si 1.86801 * 120.00071 * 344.31190 * 12 10 7
15 15 H 1.48492 * 109.47454 * 180.02562 * 14 12 10
16 16 H 1.48502 * 109.47014 * 300.00360 * 14 12 10
17 17 H 1.48502 * 109.46954 * 59.99726 * 14 12 10
18 18 C 1.33388 * 114.92269 * 359.49684 * 6 5 4
19 19 S 1.75877 * 109.59275 * 0.26656 * 18 6 5
20 20 H 1.09002 * 109.47001 * 179.97438 * 1 2 3
21 21 H 1.08995 * 109.47519 * 300.00147 * 1 2 3
22 22 H 1.09000 * 109.47171 * 59.99849 * 1 2 3
23 23 H 1.09000 * 109.46989 * 240.00321 * 2 1 3
24 24 H 1.08992 * 109.46899 * 180.02562 * 3 2 1
25 25 H 1.08997 * 109.46773 * 300.00251 * 3 2 1
26 26 H 1.09004 * 109.46998 * 59.99788 * 3 2 1
27 27 H 1.08002 * 122.53920 * 359.97097 * 5 4 2
28 28 H 1.00902 * 111.00363 * 54.23945 * 9 7 6
29 29 H 1.00903 * 110.99349 * 178.18170 * 9 7 6
30 30 H 0.96997 * 119.99858 * 354.90488 * 13 12 10
31 31 H 1.08002 * 125.20233 * 180.24519 * 18 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0323 -0.7104 1.2304
5 6 2.8069 -1.7963 1.2290
6 6 3.1397 -2.2770 2.4837
7 6 4.0019 -3.4971 2.6819
8 1 4.5702 -3.6920 1.7725
9 7 4.9283 -3.2658 3.7982
10 6 3.1278 -4.6848 2.9922
11 1 2.0639 -4.5527 3.1237
12 6 3.6862 -5.9400 3.1085
13 7 3.0047 -6.9132 3.6726
14 14 5.4106 -6.2585 2.4648
15 1 5.7759 -7.6770 2.7085
16 1 5.4539 -5.9802 1.0068
17 1 6.3727 -5.3714 3.1668
18 6 2.6441 -1.5752 3.5041
19 16 1.6933 -0.2300 2.8881
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3634 0.5138 0.8899
22 1 -0.3633 0.5139 -0.8900
23 1 1.8933 -0.5138 -0.8900
24 1 3.1299 1.4425 -0.0005
25 1 1.6766 1.9563 -0.8900
26 1 1.6766 1.9564 0.8900
27 1 3.1454 -2.2672 0.3179
28 1 4.4295 -2.9908 4.6311
29 1 5.4975 -4.0810 3.9704
30 1 2.1401 -6.7312 4.0728
31 1 2.8022 -1.7992 4.5488
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261278664.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:28
Heat of formation + Delta-G solvation = -7.147655 kcal
Electronic energy + Delta-G solvation = -13303.969548 eV
Core-core repulsion = 11096.321651 eV
Total energy + Delta-G solvation = -2207.647897 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 225.088 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.66465 -37.07030 -35.27405 -33.53624 -29.41599 -28.13977 -28.01872 -25.35769
-23.16798 -21.22464 -19.91653 -19.50497 -18.08120 -16.63714 -16.32920 -15.63451
-15.16685 -14.99732 -14.50576 -14.37744 -14.14982 -13.90653 -13.32107 -13.26537
-12.84997 -12.71277 -12.31746 -12.15017 -12.04852 -11.91312 -11.82211 -11.44841
-11.31107 -10.69852 -9.56250 -9.43885 -9.20310 -8.62533 -6.51028 0.18984
0.82801 1.13031 1.42497 1.48248 1.69556 1.95743 2.40522 2.96370
3.67600 4.02135 4.13590 4.24946 4.34684 4.41358 4.67535 4.72502
4.77562 4.91108 4.95361 5.02248 5.12465 5.22924 5.36343 5.39902
5.47210 5.73726 5.86938 5.91709 6.34887 6.51779 6.77626 7.29046
8.51870
Molecular weight = 225.09amu
Principal moments of inertia in cm(-1)
A = 0.040880 B = 0.007413 C = 0.007253
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 684.764100 B = 3776.287263 C = 3859.285762
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.026 4.026
3 C -0.140 4.140
4 C -0.163 4.163
5 C -0.155 4.155
6 C -0.068 4.068
7 C 0.234 3.766
8 H 0.041 0.959
9 N -0.844 5.844
10 C -0.623 4.623
11 H 0.012 0.988
12 C -0.015 4.015
13 N -0.930 5.930
14 Si 1.085 2.915
15 H -0.287 1.287
16 H -0.267 1.267
17 H -0.239 1.239
18 C -0.235 4.235
19 S 0.098 5.902
20 H 0.045 0.955
21 H 0.054 0.946
22 H 0.085 0.915
23 H 0.092 0.908
24 H 0.054 0.946
25 H 0.083 0.917
26 H 0.054 0.946
27 H 0.136 0.864
28 H 0.328 0.672
29 H 0.330 0.670
30 H 0.252 0.748
31 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.997 15.527 -6.438 16.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.047 4.047
3 C -0.198 4.198
4 C -0.280 4.280
5 C -0.186 4.186
6 C -0.080 4.080
7 C 0.121 3.879
8 H 0.059 0.941
9 N -0.374 5.374
10 C -0.663 4.663
11 H 0.030 0.970
12 C -0.215 4.215
13 N -0.565 5.565
14 Si 0.906 3.094
15 H -0.213 1.213
16 H -0.193 1.193
17 H -0.163 1.163
18 C -0.370 4.370
19 S 0.361 5.639
20 H 0.064 0.936
21 H 0.073 0.927
22 H 0.104 0.896
23 H 0.111 0.889
24 H 0.073 0.927
25 H 0.102 0.898
26 H 0.073 0.927
27 H 0.154 0.846
28 H 0.139 0.861
29 H 0.144 0.856
30 H 0.061 0.939
31 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges -0.402 16.113 -6.421 17.350
hybrid contribution -1.350 -1.479 0.540 2.074
sum -1.752 14.635 -5.881 15.869
Atomic orbital electron populations
1.21887 0.93327 1.01852 1.03014 1.19851 0.96430 0.96308 0.92086
1.21867 1.01255 0.93705 1.02942 1.24804 1.04025 1.00701 0.98461
1.20097 1.02470 0.97966 0.98074 1.19043 0.99314 0.96806 0.92863
1.17877 0.89247 0.88958 0.91777 0.94070 1.59785 1.26849 1.40993
1.09806 1.22772 0.94440 0.95520 1.53543 0.96956 1.27293 1.08511
0.92094 0.93572 1.70960 1.14778 1.35779 1.34958 0.83515 0.71479
0.76651 0.77759 1.21299 1.19267 1.16308 1.25215 1.07321 1.01831
1.02614 1.83397 1.52570 1.29322 0.98582 0.93614 0.92651 0.89603
0.88935 0.92720 0.89789 0.92656 0.84639 0.86060 0.85561 0.93871
0.83085
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.97 9.12 71.98 0.66 -2.32 16
2 C -0.03 -0.61 3.30 -11.54 -0.04 -0.65 16
3 C -0.14 -2.65 9.12 71.98 0.66 -2.00 16
4 C -0.16 -5.15 5.09 24.59 0.13 -5.03 16
5 C -0.16 -5.94 9.78 21.22 0.21 -5.73 16
6 C -0.07 -2.97 4.80 -20.92 -0.10 -3.07 16
7 C 0.23 11.24 2.58 43.42 0.11 11.35 16
8 H 0.04 1.99 6.80 -2.39 -0.02 1.98 16
9 N -0.84 -36.97 9.15 -174.96 -1.60 -38.57 16
10 C -0.62 -35.54 9.05 25.60 0.23 -35.31 16
11 H 0.01 0.78 7.99 -2.91 -0.02 0.76 16
12 C -0.02 -0.87 5.38 84.65 0.46 -0.42 16
13 N -0.93 -57.79 13.70 21.45 0.29 -57.50 16
14 Si 1.09 48.88 26.42 68.60 1.81 50.70 16
15 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16
16 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16
17 H -0.24 -9.42 5.69 99.48 0.57 -8.86 16
18 C -0.23 -9.31 10.37 66.72 0.69 -8.62 16
19 S 0.10 3.08 22.90 -56.49 -1.29 1.78 16
20 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16
21 H 0.05 1.15 8.00 -2.39 -0.02 1.13 16
22 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
23 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16
24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
26 H 0.05 1.06 8.00 -2.38 -0.02 1.04 16
27 H 0.14 4.92 8.06 -2.91 -0.02 4.90 16
28 H 0.33 13.89 7.51 -89.69 -0.67 13.22 16
29 H 0.33 14.36 5.50 -89.69 -0.49 13.87 16
30 H 0.25 16.06 8.73 -92.71 -0.81 15.25 16
31 H 0.15 5.89 7.08 -2.91 -0.02 5.87 16
Total: -1.00 -64.66 268.98 1.99 -62.66
By element:
Atomic # 1 Polarization: 32.93 SS G_CDS: -0.22 Total: 32.71 kcal
Atomic # 6 Polarization: -54.78 SS G_CDS: 3.00 Total: -51.79 kcal
Atomic # 7 Polarization: -94.76 SS G_CDS: -1.31 Total: -96.07 kcal
Atomic # 14 Polarization: 48.88 SS G_CDS: 1.81 Total: 50.70 kcal
Atomic # 16 Polarization: 3.08 SS G_CDS: -1.29 Total: 1.78 kcal
Total: -64.66 1.99 -62.66 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261278664.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.515 kcal
(2) G-P(sol) polarization free energy of solvation -64.656 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.141 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.148 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds