Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47064 * 2 1 4 4 C 1.50695 * 109.47191 * 120.00052 * 2 1 3 5 5 C 1.33388 * 125.20541 * 120.28786 * 4 2 1 6 6 C 1.38420 * 114.92135 * 180.20551 * 5 4 2 7 7 C 1.50710 * 122.53804 * 179.75844 * 6 5 4 8 8 H 1.08991 * 109.46914 * 19.74137 * 7 6 5 9 9 N 1.46899 * 109.46580 * 139.73880 * 7 6 5 10 10 C 1.50693 * 109.47130 * 259.73964 * 7 6 5 11 11 H 1.08009 * 120.00412 * 354.82966 * 10 7 6 12 12 C 1.37877 * 119.99997 * 174.83453 * 10 7 6 13 13 N 1.31517 * 120.00178 * 164.31455 * 12 10 7 14 14 Si 1.86801 * 120.00071 * 344.31190 * 12 10 7 15 15 H 1.48492 * 109.47454 * 180.02562 * 14 12 10 16 16 H 1.48502 * 109.47014 * 300.00360 * 14 12 10 17 17 H 1.48502 * 109.46954 * 59.99726 * 14 12 10 18 18 C 1.33388 * 114.92269 * 359.49684 * 6 5 4 19 19 S 1.75877 * 109.59275 * 0.26656 * 18 6 5 20 20 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47519 * 300.00147 * 1 2 3 22 22 H 1.09000 * 109.47171 * 59.99849 * 1 2 3 23 23 H 1.09000 * 109.46989 * 240.00321 * 2 1 3 24 24 H 1.08992 * 109.46899 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46773 * 300.00251 * 3 2 1 26 26 H 1.09004 * 109.46998 * 59.99788 * 3 2 1 27 27 H 1.08002 * 122.53920 * 359.97097 * 5 4 2 28 28 H 1.00902 * 111.00363 * 54.23945 * 9 7 6 29 29 H 1.00903 * 110.99349 * 178.18170 * 9 7 6 30 30 H 0.96997 * 119.99858 * 354.90488 * 13 12 10 31 31 H 1.08002 * 125.20233 * 180.24519 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8069 -1.7963 1.2290 6 6 3.1397 -2.2770 2.4837 7 6 4.0019 -3.4971 2.6819 8 1 4.5702 -3.6920 1.7725 9 7 4.9283 -3.2658 3.7982 10 6 3.1278 -4.6848 2.9922 11 1 2.0639 -4.5527 3.1237 12 6 3.6862 -5.9400 3.1085 13 7 3.0047 -6.9132 3.6726 14 14 5.4106 -6.2585 2.4648 15 1 5.7759 -7.6770 2.7085 16 1 5.4539 -5.9802 1.0068 17 1 6.3727 -5.3714 3.1668 18 6 2.6441 -1.5752 3.5041 19 16 1.6933 -0.2300 2.8881 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.1454 -2.2672 0.3179 28 1 4.4295 -2.9908 4.6311 29 1 5.4975 -4.0810 3.9704 30 1 2.1401 -6.7312 4.0728 31 1 2.8022 -1.7992 4.5488 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261278664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = -7.147655 kcal Electronic energy + Delta-G solvation = -13303.969548 eV Core-core repulsion = 11096.321651 eV Total energy + Delta-G solvation = -2207.647897 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.66465 -37.07030 -35.27405 -33.53624 -29.41599 -28.13977 -28.01872 -25.35769 -23.16798 -21.22464 -19.91653 -19.50497 -18.08120 -16.63714 -16.32920 -15.63451 -15.16685 -14.99732 -14.50576 -14.37744 -14.14982 -13.90653 -13.32107 -13.26537 -12.84997 -12.71277 -12.31746 -12.15017 -12.04852 -11.91312 -11.82211 -11.44841 -11.31107 -10.69852 -9.56250 -9.43885 -9.20310 -8.62533 -6.51028 0.18984 0.82801 1.13031 1.42497 1.48248 1.69556 1.95743 2.40522 2.96370 3.67600 4.02135 4.13590 4.24946 4.34684 4.41358 4.67535 4.72502 4.77562 4.91108 4.95361 5.02248 5.12465 5.22924 5.36343 5.39902 5.47210 5.73726 5.86938 5.91709 6.34887 6.51779 6.77626 7.29046 8.51870 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.040880 B = 0.007413 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.764100 B = 3776.287263 C = 3859.285762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.026 4.026 3 C -0.140 4.140 4 C -0.163 4.163 5 C -0.155 4.155 6 C -0.068 4.068 7 C 0.234 3.766 8 H 0.041 0.959 9 N -0.844 5.844 10 C -0.623 4.623 11 H 0.012 0.988 12 C -0.015 4.015 13 N -0.930 5.930 14 Si 1.085 2.915 15 H -0.287 1.287 16 H -0.267 1.267 17 H -0.239 1.239 18 C -0.235 4.235 19 S 0.098 5.902 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.085 0.915 23 H 0.092 0.908 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.136 0.864 28 H 0.328 0.672 29 H 0.330 0.670 30 H 0.252 0.748 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 15.527 -6.438 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.047 4.047 3 C -0.198 4.198 4 C -0.280 4.280 5 C -0.186 4.186 6 C -0.080 4.080 7 C 0.121 3.879 8 H 0.059 0.941 9 N -0.374 5.374 10 C -0.663 4.663 11 H 0.030 0.970 12 C -0.215 4.215 13 N -0.565 5.565 14 Si 0.906 3.094 15 H -0.213 1.213 16 H -0.193 1.193 17 H -0.163 1.163 18 C -0.370 4.370 19 S 0.361 5.639 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.104 0.896 23 H 0.111 0.889 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.154 0.846 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.061 0.939 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.402 16.113 -6.421 17.350 hybrid contribution -1.350 -1.479 0.540 2.074 sum -1.752 14.635 -5.881 15.869 Atomic orbital electron populations 1.21887 0.93327 1.01852 1.03014 1.19851 0.96430 0.96308 0.92086 1.21867 1.01255 0.93705 1.02942 1.24804 1.04025 1.00701 0.98461 1.20097 1.02470 0.97966 0.98074 1.19043 0.99314 0.96806 0.92863 1.17877 0.89247 0.88958 0.91777 0.94070 1.59785 1.26849 1.40993 1.09806 1.22772 0.94440 0.95520 1.53543 0.96956 1.27293 1.08511 0.92094 0.93572 1.70960 1.14778 1.35779 1.34958 0.83515 0.71479 0.76651 0.77759 1.21299 1.19267 1.16308 1.25215 1.07321 1.01831 1.02614 1.83397 1.52570 1.29322 0.98582 0.93614 0.92651 0.89603 0.88935 0.92720 0.89789 0.92656 0.84639 0.86060 0.85561 0.93871 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.12 71.98 0.66 -2.32 16 2 C -0.03 -0.61 3.30 -11.54 -0.04 -0.65 16 3 C -0.14 -2.65 9.12 71.98 0.66 -2.00 16 4 C -0.16 -5.15 5.09 24.59 0.13 -5.03 16 5 C -0.16 -5.94 9.78 21.22 0.21 -5.73 16 6 C -0.07 -2.97 4.80 -20.92 -0.10 -3.07 16 7 C 0.23 11.24 2.58 43.42 0.11 11.35 16 8 H 0.04 1.99 6.80 -2.39 -0.02 1.98 16 9 N -0.84 -36.97 9.15 -174.96 -1.60 -38.57 16 10 C -0.62 -35.54 9.05 25.60 0.23 -35.31 16 11 H 0.01 0.78 7.99 -2.91 -0.02 0.76 16 12 C -0.02 -0.87 5.38 84.65 0.46 -0.42 16 13 N -0.93 -57.79 13.70 21.45 0.29 -57.50 16 14 Si 1.09 48.88 26.42 68.60 1.81 50.70 16 15 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 17 H -0.24 -9.42 5.69 99.48 0.57 -8.86 16 18 C -0.23 -9.31 10.37 66.72 0.69 -8.62 16 19 S 0.10 3.08 22.90 -56.49 -1.29 1.78 16 20 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 21 H 0.05 1.15 8.00 -2.39 -0.02 1.13 16 22 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 1.06 8.00 -2.38 -0.02 1.04 16 27 H 0.14 4.92 8.06 -2.91 -0.02 4.90 16 28 H 0.33 13.89 7.51 -89.69 -0.67 13.22 16 29 H 0.33 14.36 5.50 -89.69 -0.49 13.87 16 30 H 0.25 16.06 8.73 -92.71 -0.81 15.25 16 31 H 0.15 5.89 7.08 -2.91 -0.02 5.87 16 Total: -1.00 -64.66 268.98 1.99 -62.66 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: -0.22 Total: 32.71 kcal Atomic # 6 Polarization: -54.78 SS G_CDS: 3.00 Total: -51.79 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -1.31 Total: -96.07 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.81 Total: 50.70 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.29 Total: 1.78 kcal Total: -64.66 1.99 -62.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.515 kcal (2) G-P(sol) polarization free energy of solvation -64.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds