Wall clock time and date at job start Mon Mar 30 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47429 * 2 1 4 4 C 1.50706 * 109.47091 * 119.99735 * 2 1 3 5 5 C 1.38422 * 122.53614 * 300.02476 * 4 2 1 6 6 C 1.33390 * 114.91870 * 179.97438 * 5 4 2 7 7 S 1.75890 * 109.59395 * 359.97438 * 6 5 4 8 8 C 1.33383 * 122.53781 * 119.99442 * 4 2 1 9 9 C 1.50704 * 125.20741 * 0.06509 * 8 4 2 10 10 H 1.09007 * 109.46468 * 344.97581 * 9 8 4 11 11 N 1.46896 * 109.46883 * 224.98029 * 9 8 4 12 12 C 1.50700 * 109.47434 * 104.97701 * 9 8 4 13 13 H 1.08003 * 119.99671 * 0.02562 * 12 9 8 14 14 C 1.37869 * 119.99808 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00498 * 359.97438 * 14 12 9 16 16 Si 1.86809 * 119.99664 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47100 * 89.99802 * 16 14 12 18 18 H 1.48504 * 109.47058 * 209.99910 * 16 14 12 19 19 H 1.48497 * 109.46835 * 329.99751 * 16 14 12 20 20 H 1.09001 * 109.46711 * 300.00502 * 1 2 3 21 21 H 1.09005 * 109.46989 * 60.00061 * 1 2 3 22 22 H 1.09000 * 109.47496 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47169 * 239.99772 * 2 1 3 24 24 H 1.09005 * 109.46985 * 299.99942 * 3 2 1 25 25 H 1.09001 * 109.47131 * 59.99749 * 3 2 1 26 26 H 1.08997 * 109.46830 * 180.02562 * 3 2 1 27 27 H 1.08000 * 122.54685 * 359.97438 * 5 4 2 28 28 H 1.07998 * 125.20728 * 180.02562 * 6 5 4 29 29 H 1.00898 * 111.00063 * 299.99539 * 11 9 8 30 30 H 1.00903 * 111.00207 * 63.95247 * 11 9 8 31 31 H 0.96994 * 120.00083 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7300 -0.2836 2.5121 6 6 2.2537 -1.0249 3.4896 7 16 3.1860 -2.3444 2.7943 8 6 2.8015 -1.7983 1.1672 9 6 3.2698 -2.4584 -0.1041 10 1 2.6822 -2.0872 -0.9439 11 7 3.0991 -3.9131 0.0080 12 6 4.7253 -2.1392 -0.3293 13 1 5.2580 -1.5206 0.3777 14 6 5.3766 -2.6370 -1.4378 15 7 4.7280 -3.3907 -2.2985 16 14 7.1810 -2.2419 -1.7165 17 1 8.0212 -3.2788 -1.0650 18 1 7.4635 -2.2200 -3.1742 19 1 7.4928 -0.9130 -1.1318 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.1166 0.5839 2.7061 28 1 2.1243 -0.8434 4.5463 29 1 3.6342 -4.2816 0.7799 30 1 2.1238 -4.1571 0.0949 31 1 5.1864 -3.7412 -3.0781 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:53 Heat of formation + Delta-G solvation = 17.630340 kcal Electronic energy + Delta-G solvation = -13674.831358 eV Core-core repulsion = 11468.257915 eV Total energy + Delta-G solvation = -2206.573443 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.40963 -34.43884 -33.43298 -31.48350 -28.33103 -26.71857 -25.81810 -23.39427 -21.37028 -20.90381 -17.12976 -16.69289 -16.08024 -15.38777 -14.49034 -14.03211 -13.66074 -13.24007 -12.97584 -12.59155 -12.31245 -12.13519 -11.95830 -11.61821 -11.14619 -10.85328 -10.77009 -10.72537 -10.64732 -10.22947 -10.01256 -9.74658 -9.18347 -8.43972 -7.87146 -7.64330 -7.15335 -5.90016 -4.04747 1.76301 2.36597 2.76730 3.33301 3.37444 3.40452 3.45252 4.47760 5.33740 5.35305 5.43634 5.60454 5.68510 5.83685 5.98137 6.09614 6.17380 6.21729 6.28783 6.35850 6.41721 6.66951 6.72184 6.75235 7.10945 7.22530 7.47780 7.89016 8.12700 8.57429 8.94523 9.10385 9.63791 11.14221 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.025790 B = 0.010408 C = 0.009109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.428231 B = 2689.631288 C = 3072.985269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.112 4.112 6 C -0.253 4.253 7 S 0.067 5.933 8 C -0.135 4.135 9 C 0.281 3.719 10 H 0.061 0.939 11 N -0.808 5.808 12 C -0.530 4.530 13 H 0.054 0.946 14 C 0.085 3.915 15 N -0.846 5.846 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.089 0.911 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.125 0.875 28 H 0.150 0.850 29 H 0.317 0.683 30 H 0.300 0.700 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 5.234 6.829 10.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.056 4.056 3 C -0.194 4.194 4 C -0.149 4.149 5 C -0.144 4.144 6 C -0.388 4.388 7 S 0.331 5.669 8 C -0.255 4.255 9 C 0.169 3.831 10 H 0.079 0.921 11 N -0.333 5.333 12 C -0.569 4.569 13 H 0.073 0.927 14 C -0.122 4.122 15 N -0.481 5.481 16 Si 0.711 3.289 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.200 1.200 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.142 0.858 28 H 0.168 0.832 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.299 3.869 6.540 9.264 hybrid contribution -0.154 1.625 0.432 1.689 sum -5.453 5.495 6.973 10.419 Atomic orbital electron populations 1.21806 0.95594 1.01417 1.00771 1.19807 0.94445 0.95408 0.95906 1.21761 1.01715 0.95483 1.00482 1.18656 1.03332 0.98128 0.94770 1.19902 1.01862 1.00695 0.91947 1.25289 1.08426 1.02831 1.02236 1.84076 1.52101 1.30390 1.00321 1.26681 0.99257 1.00031 0.99544 1.17961 0.96704 0.83305 0.85120 0.92116 1.59212 1.10440 1.13765 1.49873 1.20833 0.94028 1.33295 1.08770 0.92743 1.24922 0.97379 0.94236 0.95651 1.70093 1.35522 1.31212 1.11258 0.86750 0.86070 0.78794 0.77243 1.20664 1.21228 1.19962 0.93312 0.92993 0.92916 0.89281 0.93092 0.93484 0.92269 0.85763 0.83248 0.87066 0.88995 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.03 37.16 0.34 -1.66 16 2 C -0.03 -0.60 3.08 -91.77 -0.28 -0.89 16 3 C -0.14 -2.12 9.03 37.16 0.34 -1.78 16 4 C -0.14 -2.61 4.63 -106.25 -0.49 -3.10 16 5 C -0.11 -1.89 9.03 -41.21 -0.37 -2.26 16 6 C -0.25 -4.16 11.23 29.04 0.33 -3.83 16 7 S 0.07 1.25 22.67 -107.50 -2.44 -1.19 16 8 C -0.14 -2.85 5.33 -36.00 -0.19 -3.04 16 9 C 0.28 6.83 2.84 -70.02 -0.20 6.63 16 10 H 0.06 1.61 6.09 -51.93 -0.32 1.29 16 11 N -0.81 -18.97 8.50 -6.65 -0.06 -19.03 16 12 C -0.53 -14.41 8.71 -34.44 -0.30 -14.71 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 14 C 0.09 2.35 5.39 -17.82 -0.10 2.26 16 15 N -0.85 -24.28 12.77 55.43 0.71 -23.57 16 16 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H 0.05 0.64 7.72 -51.93 -0.40 0.24 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.09 1.77 5.91 -51.93 -0.31 1.46 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.65 7.72 -51.93 -0.40 0.25 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.12 1.79 7.74 -52.49 -0.41 1.39 16 28 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.32 7.26 8.40 -39.29 -0.33 6.93 16 30 H 0.30 6.34 9.06 -39.29 -0.36 5.99 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 272.44 15.07 4.11 4.11 Total: -1.00 -28.52 272.44 -7.81 -36.33 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.17 Total: 9.46 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -0.94 Total: -22.39 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.65 Total: -42.60 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.44 Total: -1.19 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.52 -7.81 -36.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.961 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds