Wall clock time and date at job start Mon Mar 30 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47429 * 2 1 4 4 C 1.50706 * 109.47091 * 119.99735 * 2 1 3 5 5 C 1.38422 * 122.53614 * 300.02476 * 4 2 1 6 6 C 1.33390 * 114.91870 * 179.97438 * 5 4 2 7 7 S 1.75890 * 109.59395 * 359.97438 * 6 5 4 8 8 C 1.33383 * 122.53781 * 119.99442 * 4 2 1 9 9 C 1.50704 * 125.20741 * 0.06509 * 8 4 2 10 10 H 1.09007 * 109.46468 * 344.97581 * 9 8 4 11 11 N 1.46896 * 109.46883 * 224.98029 * 9 8 4 12 12 C 1.50700 * 109.47434 * 104.97701 * 9 8 4 13 13 H 1.08003 * 119.99671 * 0.02562 * 12 9 8 14 14 C 1.37869 * 119.99808 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00498 * 359.97438 * 14 12 9 16 16 Si 1.86809 * 119.99664 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47100 * 89.99802 * 16 14 12 18 18 H 1.48504 * 109.47058 * 209.99910 * 16 14 12 19 19 H 1.48497 * 109.46835 * 329.99751 * 16 14 12 20 20 H 1.09001 * 109.46711 * 300.00502 * 1 2 3 21 21 H 1.09005 * 109.46989 * 60.00061 * 1 2 3 22 22 H 1.09000 * 109.47496 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47169 * 239.99772 * 2 1 3 24 24 H 1.09005 * 109.46985 * 299.99942 * 3 2 1 25 25 H 1.09001 * 109.47131 * 59.99749 * 3 2 1 26 26 H 1.08997 * 109.46830 * 180.02562 * 3 2 1 27 27 H 1.08000 * 122.54685 * 359.97438 * 5 4 2 28 28 H 1.07998 * 125.20728 * 180.02562 * 6 5 4 29 29 H 1.00898 * 111.00063 * 299.99539 * 11 9 8 30 30 H 1.00903 * 111.00207 * 63.95247 * 11 9 8 31 31 H 0.96994 * 120.00083 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7300 -0.2836 2.5121 6 6 2.2537 -1.0249 3.4896 7 16 3.1860 -2.3444 2.7943 8 6 2.8015 -1.7983 1.1672 9 6 3.2698 -2.4584 -0.1041 10 1 2.6822 -2.0872 -0.9439 11 7 3.0991 -3.9131 0.0080 12 6 4.7253 -2.1392 -0.3293 13 1 5.2580 -1.5206 0.3777 14 6 5.3766 -2.6370 -1.4378 15 7 4.7280 -3.3907 -2.2985 16 14 7.1810 -2.2419 -1.7165 17 1 8.0212 -3.2788 -1.0650 18 1 7.4635 -2.2200 -3.1742 19 1 7.4928 -0.9130 -1.1318 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.1166 0.5839 2.7061 28 1 2.1243 -0.8434 4.5463 29 1 3.6342 -4.2816 0.7799 30 1 2.1238 -4.1571 0.0949 31 1 5.1864 -3.7412 -3.0781 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:53 Heat of formation + Delta-G solvation = -0.146945 kcal Electronic energy + Delta-G solvation = -13675.602239 eV Core-core repulsion = 11468.257915 eV Total energy + Delta-G solvation = -2207.344324 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.84510 -36.30371 -34.73831 -33.51751 -29.90085 -27.92395 -27.77991 -24.96541 -22.96256 -22.38144 -18.66288 -18.54715 -17.72700 -16.82276 -16.46953 -15.85915 -15.01390 -14.72729 -14.29781 -14.20353 -14.07801 -13.65594 -13.26973 -12.93255 -12.86930 -12.66282 -12.57640 -12.15396 -11.99033 -11.91298 -11.56284 -11.36799 -11.04700 -10.54863 -9.41389 -9.10480 -8.93382 -8.00190 -6.21057 0.32749 0.93258 1.33440 1.40539 1.41830 1.51043 1.98620 2.45895 3.23900 4.05775 4.11049 4.31909 4.39263 4.43328 4.53169 4.73088 4.86337 4.89828 4.97151 5.02224 5.16817 5.30111 5.34741 5.44002 5.48748 5.72448 5.80835 5.88540 6.13052 6.60010 7.02609 7.18859 7.50636 9.03054 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.025790 B = 0.010408 C = 0.009109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.428231 B = 2689.631288 C = 3072.985269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.041 4.041 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.122 4.122 6 C -0.229 4.229 7 S 0.055 5.945 8 C -0.184 4.184 9 C 0.290 3.710 10 H 0.029 0.971 11 N -0.817 5.817 12 C -0.540 4.540 13 H 0.041 0.959 14 C 0.039 3.961 15 N -0.877 5.877 16 Si 0.943 3.057 17 H -0.277 1.277 18 H -0.281 1.281 19 H -0.273 1.273 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.041 0.959 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.159 0.841 28 H 0.188 0.812 29 H 0.319 0.681 30 H 0.311 0.689 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.200 6.767 8.449 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.062 4.062 3 C -0.188 4.188 4 C -0.138 4.138 5 C -0.152 4.152 6 C -0.364 4.364 7 S 0.319 5.681 8 C -0.304 4.304 9 C 0.178 3.822 10 H 0.047 0.953 11 N -0.344 5.344 12 C -0.579 4.579 13 H 0.059 0.941 14 C -0.165 4.165 15 N -0.513 5.513 16 Si 0.769 3.231 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 H 0.089 0.911 21 H 0.086 0.914 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.176 0.824 28 H 0.205 0.795 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.013 5.405 8.165 11.491 hybrid contribution 0.003 1.191 -0.006 1.191 sum -6.010 6.596 8.159 12.091 Atomic orbital electron populations 1.21735 0.93008 1.01349 1.02660 1.19857 0.96589 0.95946 0.93807 1.21715 1.00074 0.94507 1.02554 1.19049 1.01442 0.96811 0.96512 1.20132 1.02578 1.01935 0.90595 1.25753 1.06004 1.00646 1.03981 1.84019 1.53093 1.31880 0.99102 1.26196 1.02540 1.02109 0.99537 1.17474 0.94756 0.83747 0.86181 0.95302 1.59055 1.11356 1.13804 1.50167 1.21081 0.95722 1.32719 1.08388 0.94060 1.25612 1.01147 0.94248 0.95528 1.70207 1.36971 1.32431 1.11717 0.85816 0.81519 0.78517 0.77240 1.20319 1.20671 1.19735 0.91109 0.91379 0.93993 0.93097 0.91343 0.91087 0.94769 0.82390 0.79522 0.86872 0.87771 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.03 71.98 0.65 -2.83 16 2 C -0.04 -1.39 3.08 -11.54 -0.04 -1.43 16 3 C -0.13 -3.84 9.03 71.98 0.65 -3.19 16 4 C -0.13 -4.65 4.63 -20.92 -0.10 -4.75 16 5 C -0.12 -3.68 9.03 21.22 0.19 -3.48 16 6 C -0.23 -6.72 11.23 66.72 0.75 -5.97 16 7 S 0.06 2.00 22.67 -56.49 -1.28 0.72 16 8 C -0.18 -7.85 5.33 24.59 0.13 -7.71 16 9 C 0.29 14.64 2.84 43.42 0.12 14.77 16 10 H 0.03 1.64 6.09 -2.38 -0.01 1.62 16 11 N -0.82 -39.67 8.50 -174.95 -1.49 -41.16 16 12 C -0.54 -30.24 8.71 25.60 0.22 -30.01 16 13 H 0.04 2.36 7.74 -2.91 -0.02 2.33 16 14 C 0.04 2.17 5.39 84.65 0.46 2.63 16 15 N -0.88 -51.68 12.77 21.44 0.27 -51.41 16 16 Si 0.94 44.48 29.54 68.60 2.03 46.51 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 20 H 0.07 1.58 7.72 -2.39 -0.02 1.57 16 21 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.05 2.11 5.91 -2.39 -0.01 2.10 16 24 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.07 1.73 7.72 -2.39 -0.02 1.71 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.16 3.72 7.74 -2.91 -0.02 3.70 16 28 H 0.19 4.07 8.06 -2.91 -0.02 4.05 16 29 H 0.32 15.04 8.40 -89.70 -0.75 14.28 16 30 H 0.31 13.61 9.06 -89.69 -0.81 12.80 16 31 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -62.36 272.44 2.15 -60.21 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.43 Total: 27.11 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 3.04 Total: -41.98 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -1.21 Total: -92.56 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.28 Total: 0.72 kcal Total: -62.36 2.15 -60.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.066 kcal (2) G-P(sol) polarization free energy of solvation -62.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds