Wall clock time and date at job start Mon Mar 30 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47110 * 2 1 4 4 H 1.09000 * 109.46962 * 54.41202 * 3 2 1 5 5 N 1.46896 * 109.47027 * 294.41150 * 3 2 1 6 6 C 1.46898 * 111.00354 * 154.16879 * 5 3 2 7 7 C 1.50696 * 109.47778 * 174.78108 * 6 5 3 8 8 H 1.07998 * 119.99793 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00579 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00215 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99605 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47255 * 89.99625 * 11 9 7 13 13 H 1.48505 * 109.47050 * 209.99978 * 11 9 7 14 14 H 1.48498 * 109.47174 * 329.99464 * 11 9 7 15 15 C 1.50696 * 109.47156 * 174.41183 * 3 2 1 16 16 C 1.38429 * 122.53655 * 259.99943 * 15 3 2 17 17 C 1.33393 * 114.91836 * 180.02562 * 16 15 3 18 18 S 1.75886 * 109.59474 * 0.02562 * 17 16 15 19 19 C 1.33389 * 122.54312 * 80.02430 * 15 3 2 20 20 H 1.09006 * 109.47025 * 66.11399 * 1 2 3 21 21 H 1.08998 * 109.46911 * 186.11055 * 1 2 3 22 22 H 1.08999 * 109.47596 * 306.11169 * 1 2 3 23 23 H 1.09001 * 109.47346 * 239.99557 * 2 1 3 24 24 H 1.09003 * 109.47228 * 119.99995 * 2 1 3 25 25 H 1.00903 * 111.00661 * 30.21529 * 5 3 2 26 26 H 1.09002 * 109.47254 * 294.78191 * 6 5 3 27 27 H 1.09001 * 109.47020 * 54.77930 * 6 5 3 28 28 H 0.97003 * 119.99718 * 180.02562 * 10 9 7 29 29 H 1.07995 * 122.53898 * 0.04774 * 16 15 3 30 30 H 1.08001 * 125.20102 * 180.02562 * 17 16 15 31 31 H 1.07995 * 125.19802 * 359.94005 * 19 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9843 0.8357 5 7 1.6635 2.0949 -1.2611 6 6 1.5639 3.5506 -1.0916 7 6 1.3031 4.1956 -2.4284 8 1 1.2194 3.5850 -3.3153 9 6 1.1704 5.5649 -2.5191 10 7 0.9434 6.1277 -3.6859 11 14 1.3145 6.6209 -0.9850 12 1 2.7315 7.0202 -0.7902 13 1 0.4746 7.8358 -1.1396 14 1 0.8520 5.8462 0.1944 15 6 3.5406 1.4447 0.1384 16 6 4.1767 1.6857 1.3440 17 6 5.5093 1.6519 1.2929 18 16 6.0279 1.3001 -0.3505 19 6 4.3565 1.2152 -0.8916 20 1 -0.3633 0.4161 -0.9397 21 1 -0.3633 -1.0218 0.1094 22 1 -0.3634 0.6056 0.8302 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 0.8023 1.7133 -1.6228 26 1 0.7447 3.7819 -0.4107 27 1 2.4977 3.9332 -0.6796 28 1 0.8504 7.0912 -3.7497 29 1 3.6352 1.8856 2.2567 30 1 6.1688 1.8155 2.1323 31 1 4.0392 1.0087 -1.9031 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382171409.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:54 Heat of formation + Delta-G solvation = 26.055210 kcal Electronic energy + Delta-G solvation = -13361.732849 eV Core-core repulsion = 11155.524736 eV Total energy + Delta-G solvation = -2206.208113 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.60100 -35.53587 -33.03168 -31.42638 -29.35413 -27.19961 -25.43275 -23.06024 -21.20449 -20.46730 -18.24660 -17.36505 -16.71623 -15.26200 -14.87529 -14.65386 -13.93148 -13.25861 -12.99280 -12.82291 -12.55774 -12.33205 -12.22855 -11.93675 -11.55399 -11.29720 -11.09024 -10.77024 -10.44854 -10.42663 -10.29426 -9.80682 -9.26204 -8.56887 -8.41773 -8.03283 -7.49249 -6.04055 -4.01215 1.39252 2.00601 2.32727 3.07839 3.30334 3.37054 3.39667 4.43862 4.87687 5.20065 5.27668 5.29433 5.35220 5.44858 5.61608 5.77199 5.92075 6.00635 6.05237 6.08963 6.32334 6.34858 6.50221 6.73667 6.82500 6.94744 7.02879 7.65369 7.91588 8.35947 8.67126 9.04478 9.58617 11.09303 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.009042 C = 0.007471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.714444 B = 3095.786205 C = 3746.918455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.141 3.859 4 H 0.043 0.957 5 N -0.673 5.673 6 C 0.167 3.833 7 C -0.511 4.511 8 H 0.079 0.921 9 C 0.069 3.931 10 N -0.901 5.901 11 Si 0.875 3.125 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C -0.097 4.097 16 C -0.124 4.124 17 C -0.225 4.225 18 S 0.059 5.941 19 C -0.159 4.159 20 H 0.061 0.939 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.338 0.662 26 H -0.017 1.017 27 H 0.021 0.979 28 H 0.263 0.737 29 H 0.133 0.867 30 H 0.157 0.843 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.225 -11.475 10.226 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C 0.028 3.972 4 H 0.061 0.939 5 N -0.306 5.306 6 C 0.039 3.961 7 C -0.550 4.550 8 H 0.097 0.903 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.702 3.298 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.109 4.109 16 C -0.156 4.156 17 C -0.360 4.360 18 S 0.321 5.679 19 C -0.294 4.294 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.157 0.843 26 H 0.000 1.000 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.175 0.825 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.254 -11.436 9.189 16.366 hybrid contribution -2.010 1.143 1.953 3.027 sum 5.244 -10.293 11.142 16.050 Atomic orbital electron populations 1.21840 0.95886 1.01360 1.02278 1.21660 0.95526 0.96068 1.02329 1.20131 0.89539 0.94224 0.93325 0.93875 1.60460 1.39101 1.06391 1.24614 1.20002 0.94817 0.83991 0.97303 1.21044 1.48309 0.92111 0.93518 0.90302 1.24888 0.94825 0.97846 0.95732 1.69897 1.49840 1.10775 1.23520 0.86861 0.78446 0.80225 0.84238 1.20179 1.21237 1.19295 1.18953 0.96973 1.02817 0.92192 1.20093 0.93626 1.03010 0.98853 1.25382 0.98712 1.11951 0.99923 1.84102 1.09570 1.71101 1.03122 1.25444 0.93087 1.07308 1.03570 0.92035 0.92761 0.92929 0.91100 0.91934 0.84269 0.99951 0.96059 0.92709 0.84917 0.82514 0.81227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.64 37.16 0.36 -1.58 16 2 C -0.12 -1.59 5.49 -26.73 -0.15 -1.73 16 3 C 0.14 2.37 2.33 -68.87 -0.16 2.21 16 4 H 0.04 0.75 7.79 -51.93 -0.40 0.35 16 5 N -0.67 -13.64 5.81 -109.23 -0.63 -14.28 16 6 C 0.17 4.09 4.27 -4.98 -0.02 4.06 16 7 C -0.51 -14.73 9.92 -34.44 -0.34 -15.07 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 11 Si 0.87 22.03 27.47 -169.99 -4.67 17.36 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 15 C -0.10 -1.62 4.60 -106.25 -0.49 -2.11 16 16 C -0.12 -1.86 9.95 -41.20 -0.41 -2.27 16 17 C -0.22 -3.07 11.23 29.04 0.33 -2.75 16 18 S 0.06 0.84 23.34 -107.50 -2.51 -1.67 16 19 C -0.16 -2.63 10.52 29.04 0.31 -2.33 16 20 H 0.06 0.81 6.67 -51.93 -0.35 0.46 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.34 6.53 6.64 -39.29 -0.26 6.27 16 26 H -0.02 -0.42 7.20 -51.93 -0.37 -0.80 16 27 H 0.02 0.55 7.38 -51.93 -0.38 0.16 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.17 2.88 8.03 -52.49 -0.42 2.46 16 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -30.65 273.49 -7.91 -38.56 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.32 Total: 2.75 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -0.68 Total: -19.64 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.14 Total: -41.47 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.65 -7.91 -38.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382171409.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.612 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds