Wall clock time and date at job start Mon Mar 30 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47110 * 2 1 4 4 H 1.09000 * 109.46962 * 54.41202 * 3 2 1 5 5 N 1.46896 * 109.47027 * 294.41150 * 3 2 1 6 6 C 1.46898 * 111.00354 * 154.16879 * 5 3 2 7 7 C 1.50696 * 109.47778 * 174.78108 * 6 5 3 8 8 H 1.07998 * 119.99793 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00579 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00215 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99605 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47255 * 89.99625 * 11 9 7 13 13 H 1.48505 * 109.47050 * 209.99978 * 11 9 7 14 14 H 1.48498 * 109.47174 * 329.99464 * 11 9 7 15 15 C 1.50696 * 109.47156 * 174.41183 * 3 2 1 16 16 C 1.38429 * 122.53655 * 259.99943 * 15 3 2 17 17 C 1.33393 * 114.91836 * 180.02562 * 16 15 3 18 18 S 1.75886 * 109.59474 * 0.02562 * 17 16 15 19 19 C 1.33389 * 122.54312 * 80.02430 * 15 3 2 20 20 H 1.09006 * 109.47025 * 66.11399 * 1 2 3 21 21 H 1.08998 * 109.46911 * 186.11055 * 1 2 3 22 22 H 1.08999 * 109.47596 * 306.11169 * 1 2 3 23 23 H 1.09001 * 109.47346 * 239.99557 * 2 1 3 24 24 H 1.09003 * 109.47228 * 119.99995 * 2 1 3 25 25 H 1.00903 * 111.00661 * 30.21529 * 5 3 2 26 26 H 1.09002 * 109.47254 * 294.78191 * 6 5 3 27 27 H 1.09001 * 109.47020 * 54.77930 * 6 5 3 28 28 H 0.97003 * 119.99718 * 180.02562 * 10 9 7 29 29 H 1.07995 * 122.53898 * 0.04774 * 16 15 3 30 30 H 1.08001 * 125.20102 * 180.02562 * 17 16 15 31 31 H 1.07995 * 125.19802 * 359.94005 * 19 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9843 0.8357 5 7 1.6635 2.0949 -1.2611 6 6 1.5639 3.5506 -1.0916 7 6 1.3031 4.1956 -2.4284 8 1 1.2194 3.5850 -3.3153 9 6 1.1704 5.5649 -2.5191 10 7 0.9434 6.1277 -3.6859 11 14 1.3145 6.6209 -0.9850 12 1 2.7315 7.0202 -0.7902 13 1 0.4746 7.8358 -1.1396 14 1 0.8520 5.8462 0.1944 15 6 3.5406 1.4447 0.1384 16 6 4.1767 1.6857 1.3440 17 6 5.5093 1.6519 1.2929 18 16 6.0279 1.3001 -0.3505 19 6 4.3565 1.2152 -0.8916 20 1 -0.3633 0.4161 -0.9397 21 1 -0.3633 -1.0218 0.1094 22 1 -0.3634 0.6056 0.8302 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 0.8023 1.7133 -1.6228 26 1 0.7447 3.7819 -0.4107 27 1 2.4977 3.9332 -0.6796 28 1 0.8504 7.0912 -3.7497 29 1 3.6352 1.8856 2.2567 30 1 6.1688 1.8155 2.1323 31 1 4.0392 1.0087 -1.9031 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382171409.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:54 Heat of formation + Delta-G solvation = 6.305657 kcal Electronic energy + Delta-G solvation = -13362.589254 eV Core-core repulsion = 11155.524736 eV Total energy + Delta-G solvation = -2207.064518 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.87094 -36.93088 -34.97554 -33.12090 -30.58776 -28.91920 -26.89575 -24.26986 -23.10679 -21.70668 -19.52026 -18.86219 -18.50239 -16.87867 -16.31119 -16.08354 -15.60954 -14.73388 -14.54349 -14.16913 -14.07325 -13.73768 -13.49454 -13.41056 -12.95423 -12.73555 -12.53508 -12.34998 -12.00457 -11.76452 -11.68013 -11.54998 -11.36718 -10.81671 -9.58219 -9.19771 -9.13947 -8.30798 -6.34049 0.23098 0.87302 1.17153 1.32308 1.33153 1.44059 1.88604 2.32175 3.03418 3.47184 4.03859 4.13294 4.25353 4.30594 4.51345 4.56418 4.75108 4.83297 4.87428 4.88985 5.07806 5.11705 5.20859 5.24604 5.42982 5.52120 5.58831 5.67267 6.02159 6.59975 6.68338 6.78738 7.30837 8.85961 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.009042 C = 0.007471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.714444 B = 3095.786205 C = 3746.918455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C 0.140 3.860 4 H 0.042 0.958 5 N -0.680 5.680 6 C 0.183 3.817 7 C -0.521 4.521 8 H 0.038 0.962 9 C 0.009 3.991 10 N -0.947 5.947 11 Si 0.946 3.054 12 H -0.270 1.270 13 H -0.279 1.279 14 H -0.251 1.251 15 C -0.108 4.108 16 C -0.143 4.143 17 C -0.212 4.212 18 S 0.077 5.923 19 C -0.190 4.190 20 H 0.047 0.953 21 H 0.076 0.924 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.341 0.659 26 H -0.015 1.015 27 H 0.014 0.986 28 H 0.267 0.733 29 H 0.152 0.848 30 H 0.190 0.810 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.874 -11.798 12.925 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C 0.027 3.973 4 H 0.060 0.940 5 N -0.312 5.312 6 C 0.054 3.946 7 C -0.560 4.560 8 H 0.057 0.943 9 C -0.188 4.188 10 N -0.588 5.588 11 Si 0.769 3.231 12 H -0.195 1.195 13 H -0.204 1.204 14 H -0.175 1.175 15 C -0.120 4.120 16 C -0.173 4.173 17 C -0.347 4.347 18 S 0.340 5.660 19 C -0.325 4.325 20 H 0.066 0.934 21 H 0.095 0.905 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.161 0.839 26 H 0.003 0.997 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.170 0.830 30 H 0.207 0.793 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.905 -11.790 11.892 18.518 hybrid contribution -2.168 1.162 1.041 2.671 sum 5.737 -10.628 12.934 17.696 Atomic orbital electron populations 1.21829 0.95027 1.02743 1.01558 1.21601 0.96173 0.93863 1.03063 1.20251 0.90100 0.95743 0.91184 0.93977 1.60324 1.39376 1.04335 1.27185 1.19666 0.94123 0.86301 0.94515 1.21320 1.48063 0.92315 0.94273 0.94325 1.25824 0.94366 0.99388 0.99251 1.70047 1.51192 1.11390 1.26122 0.85737 0.78762 0.78365 0.80221 1.19518 1.20398 1.17486 1.19132 0.96804 1.02976 0.93100 1.20266 0.94264 1.03927 0.98870 1.25819 0.98803 1.09794 1.00240 1.84011 1.07654 1.70631 1.03686 1.25448 0.94961 1.08900 1.03233 0.93404 0.90500 0.92812 0.91480 0.89996 0.83931 0.99744 0.96775 0.92411 0.83026 0.79307 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.64 71.98 0.69 -2.86 16 2 C -0.11 -2.76 5.49 30.59 0.17 -2.59 16 3 C 0.14 4.53 2.33 44.17 0.10 4.63 16 4 H 0.04 1.39 7.79 -2.39 -0.02 1.37 16 5 N -0.68 -27.65 5.81 -499.49 -2.90 -30.55 16 6 C 0.18 8.91 4.27 85.56 0.37 9.28 16 7 C -0.52 -30.74 9.92 25.60 0.25 -30.48 16 8 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 9 C 0.01 0.54 5.47 84.66 0.46 1.01 16 10 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 11 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 15 C -0.11 -3.44 4.60 -20.92 -0.10 -3.54 16 16 C -0.14 -3.87 9.95 21.22 0.21 -3.66 16 17 C -0.21 -5.12 11.23 66.72 0.75 -4.37 16 18 S 0.08 2.08 23.34 -56.49 -1.32 0.76 16 19 C -0.19 -6.23 10.52 66.72 0.70 -5.53 16 20 H 0.05 1.22 6.67 -2.38 -0.02 1.21 16 21 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 25 H 0.34 13.36 6.64 -89.69 -0.60 12.77 16 26 H -0.02 -0.72 7.20 -2.39 -0.02 -0.74 16 27 H 0.01 0.71 7.38 -2.39 -0.02 0.70 16 28 H 0.27 15.75 8.31 -92.71 -0.77 14.97 16 29 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.19 3.27 8.06 -2.91 -0.02 3.24 16 31 H 0.15 5.41 8.03 -2.91 -0.02 5.39 16 Total: -1.00 -66.25 273.49 2.03 -64.21 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.46 Total: 16.38 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 3.61 Total: -38.11 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -2.60 Total: -90.26 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.32 Total: 0.76 kcal Total: -66.25 2.03 -64.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382171409.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.519 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds