Wall clock time and date at job start Mon Mar 30 2020 03:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47225 * 2 1 4 4 C 1.35993 * 117.00006 * 179.97438 * 3 2 1 5 5 C 1.37593 * 119.93700 * 0.02562 * 4 3 2 6 6 C 1.40847 * 119.81862 * 179.97438 * 5 4 3 7 7 C 1.41034 * 120.15396 * 180.02562 * 6 5 4 8 8 H 1.08007 * 120.00259 * 322.47186 * 7 6 5 9 9 C 1.39821 * 120.00036 * 142.46383 * 7 6 5 10 10 N 1.30946 * 120.00030 * 340.56032 * 9 7 6 11 11 Si 1.86801 * 120.00255 * 160.55727 * 9 7 6 12 12 H 1.48498 * 109.46930 * 94.95333 * 11 9 7 13 13 H 1.48494 * 109.47168 * 214.95749 * 11 9 7 14 14 H 1.48507 * 109.46758 * 334.95586 * 11 9 7 15 15 C 1.41177 * 119.68980 * 359.97438 * 6 5 4 16 16 F 1.35105 * 120.06544 * 180.02562 * 15 6 5 17 17 C 1.37623 * 119.87148 * 0.02562 * 15 6 5 18 18 C 1.39298 * 120.18000 * 359.74183 * 17 15 6 19 19 N 1.39016 * 119.84412 * 180.27780 * 18 17 15 20 20 H 1.09000 * 109.46930 * 60.00258 * 1 2 3 21 21 H 1.09006 * 109.47081 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47103 * 299.99805 * 1 2 3 23 23 H 1.09009 * 109.47068 * 119.99957 * 2 1 3 24 24 H 1.08998 * 109.47379 * 239.99727 * 2 1 3 25 25 H 1.08002 * 120.08764 * 359.94830 * 5 4 3 26 26 H 0.97003 * 119.99898 * 179.97438 * 10 9 7 27 27 H 1.08000 * 119.91331 * 180.02562 * 17 15 6 28 28 H 0.97007 * 119.99702 * 180.23813 * 19 18 17 29 29 H 0.96993 * 120.00517 * 0.23817 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.1915 0.4333 0.0005 6 6 5.5874 0.6207 0.0005 7 6 6.4519 -0.4937 0.0000 8 1 6.1968 -1.3753 0.5693 9 6 7.6390 -0.4572 -0.7378 10 7 7.7806 0.4108 -1.7079 11 14 9.0232 -1.6468 -0.3396 12 1 8.9244 -2.8352 -1.2246 13 1 10.3301 -0.9757 -0.5557 14 1 8.9151 -2.0751 1.0783 15 6 6.1173 1.9293 0.0000 16 9 7.4551 2.1178 -0.0005 17 6 5.2684 3.0125 0.0000 18 6 3.8887 2.8209 -0.0049 19 7 3.0376 3.9201 -0.0106 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5139 0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 3.7791 -0.5649 0.0009 26 1 8.6044 0.4363 -2.2195 27 1 5.6730 4.0138 -0.0008 28 1 2.0764 3.7893 -0.0106 29 1 3.4048 4.8178 -0.0148 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716490.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:56 Heat of formation + Delta-G solvation = -86.652275 kcal Electronic energy + Delta-G solvation = -15371.247185 eV Core-core repulsion = 12593.938533 eV Total energy + Delta-G solvation = -2777.308652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.90469 -40.63294 -37.99709 -36.00287 -34.14850 -32.42764 -30.66434 -29.48070 -26.34510 -24.61049 -22.57780 -22.28086 -19.72327 -18.25812 -17.95765 -17.58897 -16.87989 -16.75413 -15.89592 -15.63800 -15.45818 -15.12217 -14.49215 -14.06154 -13.91074 -13.51925 -13.13158 -13.07812 -12.91534 -12.70544 -12.62541 -12.15025 -12.09568 -11.43769 -11.36278 -11.12113 -10.38446 -9.08076 -8.61933 -8.02649 -6.17019 0.79991 1.01259 1.38706 1.48201 1.53807 2.26421 2.50052 2.77306 3.34779 3.50247 4.15343 4.15511 4.27317 4.37989 4.48052 4.74707 4.77599 4.98884 5.02961 5.12793 5.28960 5.31092 5.35707 5.59650 5.88797 6.19273 6.46172 6.54186 6.82356 6.97839 7.14495 7.36186 8.45619 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.009088 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.193157 B = 3080.355037 C = 3821.655136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.050 3.950 3 O -0.329 6.329 4 C 0.061 3.939 5 C -0.235 4.235 6 C 0.045 3.955 7 C -0.514 4.514 8 H 0.077 0.923 9 C 0.037 3.963 10 N -0.830 5.830 11 Si 0.974 3.026 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.259 1.259 15 C 0.020 3.980 16 F -0.156 7.156 17 C -0.187 4.187 18 C 0.124 3.876 19 N -0.869 5.869 20 H 0.065 0.935 21 H 0.097 0.903 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.120 0.880 26 H 0.283 0.717 27 H 0.129 0.871 28 H 0.401 0.599 29 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 0.873 2.272 9.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 O -0.245 6.245 4 C 0.013 3.987 5 C -0.255 4.255 6 C 0.041 3.959 7 C -0.545 4.545 8 H 0.095 0.905 9 C -0.177 4.177 10 N -0.457 5.457 11 Si 0.795 3.205 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.183 1.183 15 C -0.002 4.002 16 F -0.135 7.135 17 C -0.211 4.211 18 C 0.022 3.978 19 N -0.415 5.415 20 H 0.084 0.916 21 H 0.115 0.885 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.137 0.863 26 H 0.093 0.907 27 H 0.147 0.853 28 H 0.230 0.770 29 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.928 1.028 2.084 9.225 hybrid contribution 1.079 -0.346 -0.104 1.138 sum -7.848 0.682 1.980 8.123 Atomic orbital electron populations 1.21751 0.90528 1.04001 1.03304 1.22853 0.97023 0.81732 1.00922 1.85809 1.18379 1.30030 1.90243 1.18265 0.82305 0.92481 1.05600 1.20992 0.92687 0.97038 1.14820 1.17551 0.92352 0.92002 0.94038 1.19344 1.05028 1.01533 1.28602 0.90453 1.26533 1.00910 0.97619 0.92609 1.69883 1.27147 1.33836 1.14817 0.85317 0.77017 0.78270 0.79877 1.18507 1.19803 1.18289 1.17832 0.76472 0.94152 1.11705 1.91260 1.32018 1.95884 1.94371 1.20086 0.91362 0.97655 1.11964 1.16380 0.88790 0.85767 1.06876 1.41535 1.07245 1.04533 1.88141 0.91613 0.88456 0.91373 0.92734 0.93206 0.86254 0.90715 0.85278 0.77049 0.77198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 10.28 71.98 0.74 -2.15 15 2 C 0.05 1.50 5.46 71.98 0.39 1.90 15 3 O -0.33 -12.21 9.36 -93.47 -0.87 -13.09 15 4 C 0.06 2.71 6.70 22.58 0.15 2.87 15 5 C -0.23 -11.52 8.76 22.76 0.20 -11.32 15 6 C 0.04 2.48 5.39 -21.23 -0.11 2.37 15 7 C -0.51 -29.05 8.89 23.34 0.21 -28.84 15 8 H 0.08 4.18 7.92 -2.91 -0.02 4.15 15 9 C 0.04 2.03 4.51 85.21 0.38 2.41 15 10 N -0.83 -47.22 11.16 21.81 0.24 -46.98 15 11 Si 0.97 41.32 29.60 68.60 2.03 43.35 15 12 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 13 H -0.27 -11.29 7.11 99.48 0.71 -10.59 15 14 H -0.26 -10.71 7.11 99.48 0.71 -10.01 15 15 C 0.02 1.07 6.67 22.85 0.15 1.23 15 16 F -0.16 -9.01 14.31 44.97 0.64 -8.37 15 17 C -0.19 -8.78 9.83 22.38 0.22 -8.56 15 18 C 0.12 5.30 6.78 38.72 0.26 5.57 15 19 N -0.87 -28.17 9.04 -50.78 -0.46 -28.63 15 20 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 21 H 0.10 1.54 8.14 -2.38 -0.02 1.52 15 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.05 1.64 7.65 -2.38 -0.02 1.62 15 24 H 0.05 1.56 7.65 -2.39 -0.02 1.54 15 25 H 0.12 5.44 6.26 -2.91 -0.02 5.42 15 26 H 0.28 14.79 8.30 -92.71 -0.77 14.02 15 27 H 0.13 5.35 8.06 -2.91 -0.02 5.33 15 28 H 0.40 11.70 8.16 -92.70 -0.76 10.94 15 29 H 0.40 10.79 8.83 -92.71 -0.82 9.97 15 Total: -1.00 -65.17 255.31 3.80 -61.37 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -0.38 Total: 26.88 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 2.60 Total: -34.54 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -0.22 Total: -75.60 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.87 Total: -13.09 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 0.64 Total: -8.37 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -65.17 3.80 -61.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716490.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.283 kcal (2) G-P(sol) polarization free energy of solvation -65.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds