Wall clock time and date at job start Mon Mar 30 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47128 * 2 1 4 4 C 1.35784 * 117.00216 * 179.97438 * 3 2 1 5 5 C 1.39054 * 120.21024 * 269.98400 * 4 3 2 6 6 N 1.39995 * 119.96601 * 0.02562 * 5 4 3 7 7 C 1.38775 * 120.07253 * 180.02562 * 5 4 3 8 8 C 1.39037 * 120.49483 * 0.02562 * 7 5 4 9 9 F 1.35099 * 119.78641 * 179.97438 * 8 7 5 10 10 C 1.37629 * 120.41774 * 359.69014 * 8 7 5 11 11 C 1.40838 * 119.91400 * 0.58500 * 10 8 7 12 12 C 1.41171 * 120.24146 * 179.71866 * 11 10 8 13 13 H 1.08003 * 120.00330 * 205.19131 * 12 11 10 14 14 C 1.39916 * 120.00378 * 25.18714 * 12 11 10 15 15 N 1.30884 * 119.99575 * 26.58930 * 14 12 11 16 16 Si 1.86797 * 120.00337 * 206.58888 * 14 12 11 17 17 H 1.48499 * 109.46879 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.46932 * 299.99875 * 16 14 12 19 19 H 1.48495 * 109.46849 * 60.00151 * 16 14 12 20 20 H 1.09004 * 109.47015 * 299.99665 * 1 2 3 21 21 H 1.08999 * 109.47635 * 59.99512 * 1 2 3 22 22 H 1.09001 * 109.47562 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47015 * 240.00335 * 2 1 3 24 24 H 1.08996 * 109.47142 * 120.00473 * 2 1 3 25 25 H 0.97000 * 120.00169 * 0.02562 * 6 5 4 26 26 H 0.96998 * 120.00208 * 180.02562 * 6 5 4 27 27 H 1.07994 * 119.75461 * 179.97438 * 7 5 4 28 28 H 1.08003 * 120.04477 * 180.30671 * 10 8 7 29 29 H 0.97007 * 119.99888 * 5.89120 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3524 1.5252 0.0005 5 6 4.0455 1.6174 1.2025 6 7 3.3548 1.5261 2.4168 7 6 5.4212 1.7998 1.1997 8 6 6.1182 1.8925 0.0003 9 9 7.4574 2.0705 0.0143 10 6 5.4534 1.7981 -1.2011 11 6 4.0566 1.6188 -1.2186 12 6 3.3669 1.5270 -2.4470 13 1 2.3218 1.7941 -2.5008 14 6 4.0372 1.0901 -3.5948 15 7 5.0750 0.3001 -3.4857 16 14 3.4510 1.6343 -5.2829 17 1 4.3236 1.0376 -6.3259 18 1 2.0519 1.1821 -5.4905 19 1 3.5114 3.1152 -5.3741 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 2.3933 1.3983 2.4194 26 1 3.8377 1.5908 3.2555 27 1 5.9543 1.8712 2.1362 28 1 6.0015 1.8659 -2.1292 29 1 5.3279 -0.0513 -2.6176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575717666.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:58 Heat of formation + Delta-G solvation = -85.290792 kcal Electronic energy + Delta-G solvation = -15520.058629 eV Core-core repulsion = 12742.809015 eV Total energy + Delta-G solvation = -2777.249614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.79464 -38.66648 -36.00092 -34.75014 -32.41491 -30.92488 -28.78071 -26.87205 -25.20447 -22.33796 -21.23692 -20.72730 -18.18358 -16.83463 -16.51490 -15.92104 -14.76729 -14.51940 -14.25372 -14.15910 -14.08395 -13.86863 -12.82030 -12.79104 -12.33384 -11.95216 -11.60720 -11.41417 -11.20630 -10.99866 -10.57780 -10.45475 -10.42250 -9.75527 -9.51343 -8.95005 -8.64471 -7.58648 -7.32706 -6.53237 -4.59011 2.49036 2.78089 3.12796 3.23639 3.34254 3.94837 4.32856 4.59859 4.79579 5.37460 5.57839 5.66959 5.77132 6.00255 6.11442 6.29192 6.45646 6.55511 6.60026 6.74678 6.90321 7.15973 7.44206 7.56527 7.71548 7.86495 8.01360 8.24798 8.39220 8.57223 8.71863 9.05358 9.90613 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.013512 C = 0.008356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.216969 B = 2071.767905 C = 3350.259275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.312 6.312 4 C -0.115 4.115 5 C 0.258 3.742 6 N -0.883 5.883 7 C -0.351 4.351 8 C 0.158 3.842 9 F -0.163 7.163 10 C -0.283 4.283 11 C 0.131 3.869 12 C -0.489 4.489 13 H 0.087 0.913 14 C 0.037 3.963 15 N -0.780 5.780 16 Si 1.066 2.934 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.272 1.272 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.030 0.970 25 H 0.393 0.607 26 H 0.386 0.614 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 -0.687 3.882 6.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 O -0.229 6.229 4 C -0.164 4.164 5 C 0.154 3.846 6 N -0.423 5.423 7 C -0.375 4.375 8 C 0.138 3.862 9 F -0.142 7.142 10 C -0.304 4.304 11 C 0.126 3.874 12 C -0.516 4.516 13 H 0.105 0.895 14 C -0.187 4.187 15 N -0.402 5.402 16 Si 0.889 3.111 17 H -0.198 1.198 18 H -0.199 1.199 19 H -0.197 1.197 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.221 0.779 26 H 0.213 0.787 27 H 0.121 0.879 28 H 0.135 0.865 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.321 -0.682 2.204 4.899 hybrid contribution -0.030 -0.201 2.136 2.146 sum -4.351 -0.882 4.340 6.208 Atomic orbital electron populations 1.21693 0.95047 1.01111 1.02348 1.22543 0.93773 0.86708 0.99486 1.86071 1.19022 1.23732 1.94041 1.17836 0.83653 1.24698 0.90255 1.17446 0.90115 0.91741 0.85252 1.42309 1.09834 1.85365 1.04764 1.19439 0.92462 1.29840 0.95753 1.17251 0.75360 0.99114 0.94484 1.91344 1.32144 1.93082 1.97657 1.20851 0.95439 1.18727 0.95395 1.17343 0.90230 0.87542 0.92275 1.20543 0.99948 1.38171 0.92895 0.89489 1.27195 0.92932 0.92717 1.05873 1.70474 1.20232 1.17708 1.31754 0.83621 0.76755 0.77639 0.73103 1.19759 1.19928 1.19698 0.92752 0.92059 0.92093 0.93425 0.95148 0.77902 0.78727 0.87895 0.86515 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.28 37.16 0.38 -1.81 15 2 C 0.05 0.97 6.78 37.16 0.25 1.23 15 3 O -0.31 -7.07 8.59 -19.07 -0.16 -7.23 15 4 C -0.12 -2.83 5.78 -38.19 -0.22 -3.05 15 5 C 0.26 5.78 6.76 -83.63 -0.57 5.22 15 6 N -0.88 -15.52 9.09 32.48 0.30 -15.23 15 7 C -0.35 -8.03 9.86 -39.09 -0.39 -8.42 15 8 C 0.16 3.89 7.28 -39.51 -0.29 3.60 15 9 F -0.16 -3.85 17.26 2.25 0.04 -3.81 15 10 C -0.28 -7.40 7.94 -38.82 -0.31 -7.71 15 11 C 0.13 3.45 5.30 -106.71 -0.57 2.88 15 12 C -0.49 -12.73 8.63 -37.84 -0.33 -13.06 15 13 H 0.09 2.26 7.72 -52.48 -0.41 1.86 15 14 C 0.04 0.91 4.91 -17.33 -0.09 0.82 15 15 N -0.78 -20.27 12.32 55.55 0.68 -19.58 15 16 Si 1.07 21.11 30.01 -169.99 -5.10 16.01 15 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 18 H -0.27 -5.13 7.11 56.52 0.40 -4.72 15 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 15 25 H 0.39 6.48 8.19 -40.82 -0.33 6.15 15 26 H 0.39 5.69 8.84 -40.82 -0.36 5.33 15 27 H 0.10 2.12 8.06 -52.49 -0.42 1.70 15 28 H 0.12 3.15 6.51 -52.48 -0.34 2.81 15 29 H 0.30 8.09 6.78 -40.82 -0.28 7.82 15 LS Contribution 258.91 15.07 3.90 3.90 Total: -1.00 -27.67 258.91 -5.51 -33.18 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -3.05 Total: 13.05 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.11 Total: -20.29 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.98 Total: -34.81 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.16 Total: -7.23 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.10 Total: 16.01 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.67 -5.51 -33.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717666.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.115 kcal (2) G-P(sol) polarization free energy of solvation -27.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds