Wall clock time and date at job start Mon Mar 30 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47128 * 2 1 4 4 C 1.35784 * 117.00216 * 179.97438 * 3 2 1 5 5 C 1.39054 * 120.21024 * 269.98400 * 4 3 2 6 6 N 1.39995 * 119.96601 * 0.02562 * 5 4 3 7 7 C 1.38775 * 120.07253 * 180.02562 * 5 4 3 8 8 C 1.39037 * 120.49483 * 0.02562 * 7 5 4 9 9 F 1.35099 * 119.78641 * 179.97438 * 8 7 5 10 10 C 1.37629 * 120.41774 * 359.69014 * 8 7 5 11 11 C 1.40838 * 119.91400 * 0.58500 * 10 8 7 12 12 C 1.41171 * 120.24146 * 179.71866 * 11 10 8 13 13 H 1.08003 * 120.00330 * 205.19131 * 12 11 10 14 14 C 1.39916 * 120.00378 * 25.18714 * 12 11 10 15 15 N 1.30884 * 119.99575 * 26.58930 * 14 12 11 16 16 Si 1.86797 * 120.00337 * 206.58888 * 14 12 11 17 17 H 1.48499 * 109.46879 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.46932 * 299.99875 * 16 14 12 19 19 H 1.48495 * 109.46849 * 60.00151 * 16 14 12 20 20 H 1.09004 * 109.47015 * 299.99665 * 1 2 3 21 21 H 1.08999 * 109.47635 * 59.99512 * 1 2 3 22 22 H 1.09001 * 109.47562 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47015 * 240.00335 * 2 1 3 24 24 H 1.08996 * 109.47142 * 120.00473 * 2 1 3 25 25 H 0.97000 * 120.00169 * 0.02562 * 6 5 4 26 26 H 0.96998 * 120.00208 * 180.02562 * 6 5 4 27 27 H 1.07994 * 119.75461 * 179.97438 * 7 5 4 28 28 H 1.08003 * 120.04477 * 180.30671 * 10 8 7 29 29 H 0.97007 * 119.99888 * 5.89120 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3524 1.5252 0.0005 5 6 4.0455 1.6174 1.2025 6 7 3.3548 1.5261 2.4168 7 6 5.4212 1.7998 1.1997 8 6 6.1182 1.8925 0.0003 9 9 7.4574 2.0705 0.0143 10 6 5.4534 1.7981 -1.2011 11 6 4.0566 1.6188 -1.2186 12 6 3.3669 1.5270 -2.4470 13 1 2.3218 1.7941 -2.5008 14 6 4.0372 1.0901 -3.5948 15 7 5.0750 0.3001 -3.4857 16 14 3.4510 1.6343 -5.2829 17 1 4.3236 1.0376 -6.3259 18 1 2.0519 1.1821 -5.4905 19 1 3.5114 3.1152 -5.3741 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 2.3933 1.3983 2.4194 26 1 3.8377 1.5908 3.2555 27 1 5.9543 1.8712 2.1362 28 1 6.0015 1.8659 -2.1292 29 1 5.3279 -0.0513 -2.6176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575717666.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:58 Heat of formation + Delta-G solvation = -102.463843 kcal Electronic energy + Delta-G solvation = -15520.803308 eV Core-core repulsion = 12742.809015 eV Total energy + Delta-G solvation = -2777.994293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.71237 -40.47419 -37.77821 -36.54980 -34.18530 -32.40273 -30.62135 -28.67205 -27.10830 -23.84159 -23.09079 -22.55621 -20.05142 -18.54982 -18.29433 -17.78214 -16.46419 -16.35069 -16.01642 -15.88136 -15.72231 -15.53824 -14.70984 -14.52647 -13.94253 -13.55568 -13.25056 -13.01054 -12.87985 -12.60272 -12.26001 -12.07606 -11.96854 -11.56953 -11.30642 -10.78900 -10.40667 -9.52147 -9.25429 -8.27725 -6.56959 0.58907 0.90688 1.50661 1.63128 1.80839 2.29823 2.50370 2.98464 3.08214 3.52440 3.79333 4.17909 4.38099 4.45641 4.58668 4.61975 4.79347 4.89747 5.08349 5.14679 5.28183 5.29885 5.50192 5.62434 5.75132 6.00123 6.09771 6.46464 6.57018 6.79652 7.13994 7.23660 7.93126 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.013512 C = 0.008356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.216969 B = 2071.767905 C = 3350.259275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 O -0.322 6.322 4 C -0.128 4.128 5 C 0.261 3.739 6 N -0.860 5.860 7 C -0.344 4.344 8 C 0.150 3.850 9 F -0.160 7.160 10 C -0.307 4.307 11 C 0.107 3.893 12 C -0.516 4.516 13 H 0.079 0.921 14 C 0.005 3.995 15 N -0.800 5.800 16 Si 1.115 2.885 17 H -0.270 1.270 18 H -0.254 1.254 19 H -0.264 1.264 20 H 0.071 0.929 21 H 0.053 0.947 22 H 0.089 0.911 23 H 0.019 0.981 24 H 0.041 0.959 25 H 0.402 0.598 26 H 0.405 0.595 27 H 0.132 0.868 28 H 0.097 0.903 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -0.643 5.074 7.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 O -0.239 6.239 4 C -0.178 4.178 5 C 0.155 3.845 6 N -0.401 5.401 7 C -0.368 4.368 8 C 0.130 3.870 9 F -0.139 7.139 10 C -0.329 4.329 11 C 0.103 3.897 12 C -0.543 4.543 13 H 0.097 0.903 14 C -0.214 4.214 15 N -0.422 5.422 16 Si 0.931 3.069 17 H -0.194 1.194 18 H -0.178 1.178 19 H -0.188 1.188 20 H 0.090 0.910 21 H 0.072 0.928 22 H 0.108 0.892 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.231 0.769 26 H 0.234 0.766 27 H 0.150 0.850 28 H 0.115 0.885 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.634 -0.644 3.463 6.645 hybrid contribution 0.355 -0.229 1.967 2.012 sum -5.279 -0.873 5.430 7.623 Atomic orbital electron populations 1.21685 0.91540 1.03205 1.02871 1.22717 0.96498 0.84806 0.98646 1.86009 1.18003 1.25820 1.94022 1.18029 0.84478 1.24719 0.90553 1.17451 0.90127 0.90611 0.86312 1.42176 1.10286 1.83755 1.03924 1.19735 0.92807 1.28201 0.96094 1.17409 0.75655 0.99176 0.94790 1.91344 1.31800 1.93044 1.97663 1.20746 0.95701 1.21047 0.95357 1.17669 0.90616 0.87926 0.93487 1.20616 0.99762 1.39982 0.93897 0.90293 1.28560 0.92152 0.91518 1.09130 1.70585 1.21662 1.19341 1.30579 0.83044 0.77312 0.77672 0.68867 1.19423 1.17793 1.18819 0.90988 0.92752 0.89217 0.96253 0.94026 0.76869 0.76572 0.85032 0.88509 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 10.28 71.98 0.74 -3.03 15 2 C 0.05 1.82 6.78 71.98 0.49 2.31 15 3 O -0.32 -14.34 8.59 -91.14 -0.78 -15.12 15 4 C -0.13 -6.26 5.78 23.17 0.13 -6.13 15 5 C 0.26 11.23 6.76 38.16 0.26 11.49 15 6 N -0.86 -27.46 9.09 -51.16 -0.47 -27.92 15 7 C -0.34 -15.14 9.86 22.59 0.22 -14.92 15 8 C 0.15 7.37 7.28 22.32 0.16 7.54 15 9 F -0.16 -7.49 17.26 44.97 0.78 -6.72 15 10 C -0.31 -16.56 7.94 22.76 0.18 -16.38 15 11 C 0.11 5.81 5.30 -21.22 -0.11 5.70 15 12 C -0.52 -27.68 8.63 23.40 0.20 -27.47 15 13 H 0.08 4.23 7.72 -2.91 -0.02 4.21 15 14 C 0.00 0.24 4.91 85.24 0.42 0.66 15 15 N -0.80 -43.11 12.32 21.82 0.27 -42.84 15 16 Si 1.11 42.75 30.01 68.60 2.06 44.81 15 17 H -0.27 -10.12 7.11 99.48 0.71 -9.42 15 18 H -0.25 -8.84 7.11 99.48 0.71 -8.14 15 19 H -0.26 -9.68 7.11 99.48 0.71 -8.98 15 20 H 0.07 1.75 8.14 -2.38 -0.02 1.73 15 21 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.09 1.98 8.14 -2.39 -0.02 1.96 15 23 H 0.02 0.82 8.14 -2.38 -0.02 0.80 15 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 25 H 0.40 11.88 8.19 -92.71 -0.76 11.12 15 26 H 0.40 10.28 8.84 -92.71 -0.82 9.46 15 27 H 0.13 4.98 8.06 -2.91 -0.02 4.95 15 28 H 0.10 5.50 6.51 -2.91 -0.02 5.48 15 29 H 0.29 16.11 6.78 -92.70 -0.63 15.48 15 Total: -1.00 -60.68 258.91 4.30 -56.38 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.25 Total: 31.66 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 2.69 Total: -40.24 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -0.20 Total: -70.77 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.78 Total: -15.12 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.78 Total: -6.72 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.06 Total: 44.81 kcal Total: -60.68 4.30 -56.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717666.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.086 kcal (2) G-P(sol) polarization free energy of solvation -60.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds