Wall clock time and date at job start Mon Mar 30 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46993 * 2 1 4 4 C 1.35703 * 117.00145 * 180.02562 * 3 2 1 5 5 C 1.38918 * 119.74122 * 180.02562 * 4 3 2 6 6 C 1.38312 * 120.16472 * 179.97438 * 5 4 3 7 7 N 1.38867 * 120.18171 * 179.97438 * 6 5 4 8 8 C 1.41620 * 119.63834 * 0.02562 * 6 5 4 9 9 C 1.40904 * 120.25355 * 180.02562 * 8 6 5 10 10 H 1.07993 * 120.00093 * 323.42962 * 9 8 6 11 11 C 1.39845 * 119.99857 * 143.42968 * 9 8 6 12 12 N 1.30976 * 119.99866 * 339.65590 * 11 9 8 13 13 Si 1.86800 * 120.00018 * 159.66406 * 11 9 8 14 14 H 1.48504 * 109.47218 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47391 * 119.99628 * 13 11 9 16 16 H 1.48508 * 109.46766 * 239.99861 * 13 11 9 17 17 C 1.41043 * 119.49554 * 359.97438 * 8 6 5 18 18 F 1.35097 * 120.09090 * 179.97438 * 17 8 6 19 19 C 1.37578 * 119.81878 * 359.97438 * 17 8 6 20 20 H 1.09003 * 109.46920 * 300.00151 * 1 2 3 21 21 H 1.09001 * 109.47437 * 60.00194 * 1 2 3 22 22 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47128 * 240.00243 * 2 1 3 24 24 H 1.08990 * 109.46981 * 119.99804 * 2 1 3 25 25 H 1.08000 * 119.91507 * 0.26814 * 5 4 3 26 26 H 0.97000 * 120.00172 * 0.02562 * 7 6 5 27 27 H 0.97000 * 119.99957 * 179.97438 * 7 6 5 28 28 H 0.97000 * 119.99701 * 179.97438 * 12 11 9 29 29 H 1.08004 * 119.82100 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5252 -0.0005 5 6 3.8768 2.8113 0.0000 6 6 5.2466 3.0027 0.0000 7 7 5.7719 4.2882 -0.0001 8 6 6.1105 1.8806 -0.0011 9 6 7.5080 2.0606 -0.0006 10 1 7.9477 2.8752 -0.5568 11 6 8.3256 1.1844 0.7202 12 7 7.8193 0.4652 1.6907 13 14 10.1397 1.0399 0.2990 14 1 10.4602 1.9516 -0.8286 15 1 10.9541 1.4119 1.4836 16 1 10.4468 -0.3590 -0.0935 17 6 5.5614 0.5814 -0.0016 18 9 6.3744 -0.4975 -0.0032 19 6 4.1956 0.4160 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.2137 3.6638 0.0052 26 1 5.1777 5.0549 0.0003 27 1 6.7329 4.4194 0.0003 28 1 8.3863 -0.1429 2.1904 29 1 3.7751 -0.5789 -0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718158.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:45 Heat of formation + Delta-G solvation = -67.280516 kcal Electronic energy + Delta-G solvation = -15372.476460 eV Core-core repulsion = 12596.007830 eV Total energy + Delta-G solvation = -2776.468630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.89732 -38.82353 -36.80624 -33.29128 -32.75132 -31.14089 -28.92438 -27.62665 -24.64997 -22.98153 -21.17790 -20.16412 -17.38643 -17.29135 -16.26579 -15.43610 -15.07981 -14.93030 -14.21264 -13.79996 -13.65860 -13.45254 -13.05000 -12.56433 -12.42082 -11.97951 -11.58864 -11.49295 -11.18742 -10.97009 -10.89411 -10.45399 -10.31317 -10.03415 -9.64143 -8.97419 -8.62628 -6.94235 -6.68874 -6.44188 -4.10923 2.78806 2.85272 3.16816 3.20763 3.22288 4.02347 4.08835 4.70040 5.10528 5.27323 5.39435 5.45910 5.63073 5.85067 6.00801 6.09482 6.18382 6.23413 6.47351 6.64793 7.00123 7.28786 7.31189 7.51307 7.71627 7.91905 8.29711 8.52368 8.60652 8.85834 8.97932 9.07249 10.41245 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.040035 B = 0.008493 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.218162 B = 3295.997154 C = 3860.420989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.326 6.326 4 C 0.086 3.914 5 C -0.222 4.222 6 C 0.187 3.813 7 N -0.872 5.872 8 C 0.011 3.989 9 C -0.478 4.478 10 H 0.075 0.925 11 C 0.080 3.920 12 N -0.793 5.793 13 Si 0.902 3.098 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.274 1.274 17 C 0.095 3.905 18 F -0.138 7.138 19 C -0.264 4.264 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.104 0.896 26 H 0.382 0.618 27 H 0.397 0.603 28 H 0.277 0.723 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 0.902 -2.047 6.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.241 6.241 4 C 0.041 3.959 5 C -0.246 4.246 6 C 0.083 3.917 7 N -0.413 5.413 8 C 0.005 3.995 9 C -0.509 4.509 10 H 0.093 0.907 11 C -0.138 4.138 12 N -0.419 5.419 13 Si 0.727 3.273 14 H -0.188 1.188 15 H -0.204 1.204 16 H -0.200 1.200 17 C 0.072 3.928 18 F -0.117 7.117 19 C -0.285 4.285 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.122 0.878 26 H 0.208 0.792 27 H 0.227 0.773 28 H 0.088 0.912 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.160 0.778 -1.861 6.482 hybrid contribution 1.216 -0.356 0.029 1.267 sum -4.944 0.422 -1.832 5.289 Atomic orbital electron populations 1.21747 0.93984 1.01960 1.02886 1.22499 0.94495 0.83727 1.00916 1.85840 1.20495 1.27287 1.90495 1.17826 0.80396 0.92832 1.04806 1.19152 0.92762 0.93960 1.18751 1.17299 0.90297 0.85609 0.98461 1.41914 1.09293 1.03539 1.86514 1.17024 0.93677 0.88352 1.00401 1.18812 0.90344 1.13438 1.28301 0.90664 1.25632 1.00506 0.94369 0.93257 1.69838 1.38111 1.19786 1.14193 0.86376 0.82826 0.78998 0.79114 1.18752 1.20445 1.19961 1.17088 0.85704 0.83283 1.06704 1.91324 1.73271 1.53467 1.93642 1.20451 0.93070 0.97113 1.17857 0.91977 0.92000 0.91179 0.92898 0.92828 0.87810 0.79201 0.77319 0.91225 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 37.16 0.38 -1.43 15 2 C 0.06 0.96 5.45 37.16 0.20 1.17 15 3 O -0.33 -6.61 10.12 -18.81 -0.19 -6.80 15 4 C 0.09 1.98 6.70 -38.90 -0.26 1.72 15 5 C -0.22 -5.02 9.79 -39.30 -0.38 -5.40 15 6 C 0.19 4.41 6.78 -83.36 -0.56 3.85 15 7 N -0.87 -16.84 8.98 32.68 0.29 -16.55 15 8 C 0.01 0.30 5.41 -106.54 -0.58 -0.28 15 9 C -0.48 -12.69 8.11 -37.97 -0.31 -13.00 15 10 H 0.08 1.88 7.14 -52.49 -0.37 1.51 15 11 C 0.08 2.09 4.49 -17.32 -0.08 2.01 15 12 N -0.79 -21.85 11.15 55.54 0.62 -21.23 15 13 Si 0.90 19.69 29.61 -169.99 -5.03 14.66 15 14 H -0.26 -5.62 7.11 56.52 0.40 -5.21 15 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 17 C 0.09 2.55 6.67 -38.76 -0.26 2.29 15 18 F -0.14 -3.88 14.26 2.25 0.03 -3.84 15 19 C -0.26 -6.37 8.98 -39.40 -0.35 -6.72 15 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.05 0.83 7.64 -51.93 -0.40 0.44 15 24 H 0.05 0.87 7.64 -51.93 -0.40 0.47 15 25 H 0.10 2.10 8.06 -52.49 -0.42 1.68 15 26 H 0.38 6.06 8.83 -40.82 -0.36 5.69 15 27 H 0.40 7.53 7.26 -40.82 -0.30 7.23 15 28 H 0.28 7.06 8.30 -40.82 -0.34 6.73 15 29 H 0.11 2.31 6.25 -52.48 -0.33 1.99 15 LS Contribution 253.64 15.07 3.82 3.82 Total: -1.00 -29.88 253.64 -5.63 -35.52 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -2.98 Total: 10.23 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.20 Total: -15.80 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.91 Total: -37.78 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.19 Total: -6.80 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.03 Total: -3.84 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.88 -5.63 -35.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718158.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.761 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds