Wall clock time and date at job start Mon Mar 30 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46993 * 2 1 4 4 C 1.35703 * 117.00145 * 180.02562 * 3 2 1 5 5 C 1.38918 * 119.74122 * 180.02562 * 4 3 2 6 6 C 1.38312 * 120.16472 * 179.97438 * 5 4 3 7 7 N 1.38867 * 120.18171 * 179.97438 * 6 5 4 8 8 C 1.41620 * 119.63834 * 0.02562 * 6 5 4 9 9 C 1.40904 * 120.25355 * 180.02562 * 8 6 5 10 10 H 1.07993 * 120.00093 * 323.42962 * 9 8 6 11 11 C 1.39845 * 119.99857 * 143.42968 * 9 8 6 12 12 N 1.30976 * 119.99866 * 339.65590 * 11 9 8 13 13 Si 1.86800 * 120.00018 * 159.66406 * 11 9 8 14 14 H 1.48504 * 109.47218 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47391 * 119.99628 * 13 11 9 16 16 H 1.48508 * 109.46766 * 239.99861 * 13 11 9 17 17 C 1.41043 * 119.49554 * 359.97438 * 8 6 5 18 18 F 1.35097 * 120.09090 * 179.97438 * 17 8 6 19 19 C 1.37578 * 119.81878 * 359.97438 * 17 8 6 20 20 H 1.09003 * 109.46920 * 300.00151 * 1 2 3 21 21 H 1.09001 * 109.47437 * 60.00194 * 1 2 3 22 22 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47128 * 240.00243 * 2 1 3 24 24 H 1.08990 * 109.46981 * 119.99804 * 2 1 3 25 25 H 1.08000 * 119.91507 * 0.26814 * 5 4 3 26 26 H 0.97000 * 120.00172 * 0.02562 * 7 6 5 27 27 H 0.97000 * 119.99957 * 179.97438 * 7 6 5 28 28 H 0.97000 * 119.99701 * 179.97438 * 12 11 9 29 29 H 1.08004 * 119.82100 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5252 -0.0005 5 6 3.8768 2.8113 0.0000 6 6 5.2466 3.0027 0.0000 7 7 5.7719 4.2882 -0.0001 8 6 6.1105 1.8806 -0.0011 9 6 7.5080 2.0606 -0.0006 10 1 7.9477 2.8752 -0.5568 11 6 8.3256 1.1844 0.7202 12 7 7.8193 0.4652 1.6907 13 14 10.1397 1.0399 0.2990 14 1 10.4602 1.9516 -0.8286 15 1 10.9541 1.4119 1.4836 16 1 10.4468 -0.3590 -0.0935 17 6 5.5614 0.5814 -0.0016 18 9 6.3744 -0.4975 -0.0032 19 6 4.1956 0.4160 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.2137 3.6638 0.0052 26 1 5.1777 5.0549 0.0003 27 1 6.7329 4.4194 0.0003 28 1 8.3863 -0.1429 2.1904 29 1 3.7751 -0.5789 -0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718158.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:45 Heat of formation + Delta-G solvation = -86.789956 kcal Electronic energy + Delta-G solvation = -15373.322452 eV Core-core repulsion = 12596.007830 eV Total energy + Delta-G solvation = -2777.314623 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.95764 -40.51871 -38.53132 -35.18962 -34.43708 -32.49965 -30.73198 -29.40180 -26.52590 -24.34259 -23.05315 -21.86323 -19.26110 -19.05924 -18.00700 -16.89759 -16.83894 -16.76808 -15.93168 -15.65472 -15.54757 -15.26268 -14.78128 -13.99955 -13.96253 -13.35596 -13.21583 -13.06279 -13.01169 -12.71638 -12.53299 -12.10743 -11.79093 -11.67190 -11.53093 -10.86474 -10.42506 -8.84602 -8.57426 -8.26080 -6.08124 0.90847 0.98336 1.40019 1.47059 1.53829 2.27822 2.51362 2.80299 3.49422 3.52984 4.10494 4.13129 4.28546 4.36429 4.48573 4.66698 4.70408 4.94184 5.01428 5.21001 5.25988 5.34864 5.53454 5.69383 5.82142 6.04510 6.38883 6.74061 6.83264 6.99182 7.14529 7.42595 8.51217 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.040035 B = 0.008493 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.218162 B = 3295.997154 C = 3860.420989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 O -0.329 6.329 4 C 0.100 3.900 5 C -0.233 4.233 6 C 0.194 3.806 7 N -0.856 5.856 8 C -0.027 4.027 9 C -0.501 4.501 10 H 0.082 0.918 11 C 0.035 3.965 12 N -0.835 5.835 13 Si 0.970 3.030 14 H -0.254 1.254 15 H -0.269 1.269 16 H -0.279 1.279 17 C 0.062 3.938 18 F -0.154 7.154 19 C -0.279 4.279 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.099 0.901 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.131 0.869 26 H 0.401 0.599 27 H 0.401 0.599 28 H 0.279 0.721 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 1.732 -2.449 7.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 O -0.244 6.244 4 C 0.055 3.945 5 C -0.257 4.257 6 C 0.088 3.912 7 N -0.397 5.397 8 C -0.033 4.033 9 C -0.532 4.532 10 H 0.100 0.900 11 C -0.179 4.179 12 N -0.463 5.463 13 Si 0.793 3.207 14 H -0.177 1.177 15 H -0.194 1.194 16 H -0.205 1.205 17 C 0.040 3.960 18 F -0.133 7.133 19 C -0.301 4.301 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.117 0.883 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.149 0.851 26 H 0.231 0.769 27 H 0.230 0.770 28 H 0.089 0.911 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.035 1.653 -2.270 7.574 hybrid contribution 1.277 -0.571 0.138 1.406 sum -5.758 1.082 -2.131 6.234 Atomic orbital electron populations 1.21762 0.90565 1.04052 1.03333 1.22892 0.97177 0.81798 1.00973 1.85859 1.18683 1.29970 1.89907 1.18027 0.81548 0.92678 1.02295 1.19467 0.92799 0.94891 1.18588 1.17467 0.90586 0.86385 0.96777 1.41847 1.09934 1.02820 1.85079 1.17388 0.94569 0.89246 1.02071 1.19076 0.90853 1.14399 1.28895 0.89973 1.26468 1.04821 0.93838 0.92727 1.69917 1.39780 1.21054 1.15545 0.85331 0.77507 0.78612 0.79277 1.17710 1.19406 1.20469 1.17523 0.86698 0.83331 1.08496 1.91263 1.73886 1.54159 1.93991 1.20584 0.92317 0.98428 1.18750 0.91663 0.91405 0.88281 0.92582 0.93085 0.85094 0.76919 0.76961 0.91112 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 10.28 71.98 0.74 -2.26 15 2 C 0.05 1.43 5.45 71.98 0.39 1.82 15 3 O -0.33 -12.72 10.12 -90.23 -0.91 -13.64 15 4 C 0.10 4.49 6.70 22.71 0.15 4.64 15 5 C -0.23 -10.15 9.79 22.45 0.22 -9.93 15 6 C 0.19 8.96 6.78 38.88 0.26 9.23 15 7 N -0.86 -31.54 8.98 -50.53 -0.45 -31.99 15 8 C -0.03 -1.46 5.41 -21.10 -0.11 -1.58 15 9 C -0.50 -26.84 8.11 23.31 0.19 -26.65 15 10 H 0.08 4.10 7.14 -2.91 -0.02 4.08 15 11 C 0.03 1.83 4.49 85.21 0.38 2.22 15 12 N -0.84 -47.14 11.15 21.82 0.24 -46.89 15 13 Si 0.97 40.74 29.61 68.60 2.03 42.77 15 14 H -0.25 -10.10 7.11 99.48 0.71 -9.40 15 15 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 17 C 0.06 3.40 6.67 22.80 0.15 3.56 15 18 F -0.15 -8.93 14.26 44.97 0.64 -8.29 15 19 C -0.28 -13.56 8.98 22.39 0.20 -13.36 15 20 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.07 1.38 8.14 -2.39 -0.02 1.37 15 22 H 0.10 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.06 1.68 7.64 -2.39 -0.02 1.66 15 24 H 0.05 1.58 7.64 -2.39 -0.02 1.57 15 25 H 0.13 4.91 8.06 -2.91 -0.02 4.89 15 26 H 0.40 11.66 8.83 -92.71 -0.82 10.84 15 27 H 0.40 14.61 7.26 -92.71 -0.67 13.93 15 28 H 0.28 14.61 8.30 -92.71 -0.77 13.84 15 29 H 0.12 5.23 6.25 -2.91 -0.02 5.21 15 Total: -1.00 -64.46 253.64 3.83 -60.63 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.30 Total: 29.74 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 2.58 Total: -32.32 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -0.21 Total: -78.89 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.91 Total: -13.64 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 0.64 Total: -8.29 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -64.46 3.83 -60.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718158.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.158 kcal (2) G-P(sol) polarization free energy of solvation -64.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds