Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48507 * 109.47027 * 239.99549 * 3 2 1 5 5 H 1.48504 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47210 * 120.00035 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21284 * 119.99485 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00205 * 0.02562 * 12 11 10 15 15 H 1.09003 * 109.47216 * 54.99612 * 14 12 11 16 16 O 1.42900 * 109.47128 * 175.00233 * 14 12 11 17 17 C 1.53000 * 109.47190 * 294.99653 * 14 12 11 18 18 C 1.52995 * 117.50227 * 248.74924 * 17 14 12 19 19 C 1.52999 * 117.50428 * 180.08766 * 17 14 12 20 20 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 21 21 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 22 22 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 23 23 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 24 24 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 25 25 H 0.96698 * 114.00263 * 59.99612 * 16 14 12 26 26 H 1.09012 * 115.54957 * 34.41618 * 17 14 12 27 27 H 1.08997 * 117.49742 * 0.02562 * 18 17 14 28 28 H 1.08998 * 117.50318 * 145.01684 * 18 17 14 29 29 H 1.08997 * 117.50040 * 214.98456 * 19 17 14 30 30 H 1.08999 * 117.49440 * 359.97438 * 19 17 14 31 31 H 1.09003 * 113.77049 * 270.34039 * 20 11 10 32 32 H 1.08993 * 113.77081 * 138.93800 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 6 0.8406 -5.5354 -1.3942 13 8 1.3838 -6.4981 -0.8953 14 6 -0.2246 -5.7303 -2.4422 15 1 0.0430 -5.1735 -3.3402 16 8 -0.3338 -7.1197 -2.7578 17 6 -1.5651 -5.2220 -1.9075 18 6 -2.6497 -6.2612 -1.6172 19 6 -2.7816 -5.3347 -2.8285 20 6 2.1608 -3.7402 -0.0462 21 1 -0.4849 0.8401 -0.0004 22 1 0.4833 -2.5466 0.7730 23 1 -0.3213 -2.8307 -1.5255 24 1 1.3285 -2.4988 -2.2141 25 1 -0.5700 -7.6770 -2.0037 26 1 -1.5104 -4.3544 -1.2498 27 1 -2.4083 -7.3071 -1.8067 28 1 -3.3089 -6.0772 -0.7688 29 1 -3.5274 -4.5415 -2.7765 30 1 -2.6269 -5.7706 -3.8155 31 1 3.1449 -3.5476 -0.4734 32 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598025704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = -49.078258 kcal Electronic energy + Delta-G solvation = -15643.522394 eV Core-core repulsion = 12991.303378 eV Total energy + Delta-G solvation = -2652.219016 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.39771 -39.51423 -38.24579 -35.94047 -34.62790 -31.52859 -28.96634 -26.89999 -26.50829 -23.36598 -22.56970 -21.72794 -20.12552 -18.84622 -18.32465 -17.77728 -17.41891 -16.63565 -16.30360 -15.70308 -15.24904 -14.84389 -14.37929 -14.08157 -13.73455 -13.31884 -13.18241 -12.93946 -12.69217 -12.61775 -12.39450 -12.24398 -11.90133 -11.57802 -11.28823 -11.19375 -11.09561 -10.59513 -10.34511 -9.59024 -8.16148 -6.27016 1.48471 1.49084 1.50665 1.57199 1.90055 2.46348 2.78186 3.14995 3.16878 3.40315 3.68871 3.89431 4.08763 4.23850 4.33578 4.42480 4.46050 4.57633 4.64559 4.75583 4.83438 4.91167 4.97169 5.04961 5.18232 5.25314 5.59763 5.81572 6.22413 6.42857 6.79538 6.82622 7.06987 7.42849 8.93142 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.038395 B = 0.006999 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.087740 B = 3999.511423 C = 4503.797609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.025 3.975 10 C 0.118 3.882 11 N -0.635 5.635 12 C 0.496 3.504 13 O -0.594 6.594 14 C 0.141 3.859 15 H 0.133 0.867 16 O -0.542 6.542 17 C -0.211 4.211 18 C -0.168 4.168 19 C -0.147 4.147 20 C 0.104 3.896 21 H 0.265 0.735 22 H 0.037 0.963 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.388 0.612 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -6.470 -5.042 9.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.006 3.994 10 C -0.004 4.004 11 N -0.369 5.369 12 C 0.286 3.714 13 O -0.477 6.477 14 C 0.079 3.921 15 H 0.150 0.850 16 O -0.349 6.349 17 C -0.230 4.230 18 C -0.205 4.205 19 C -0.184 4.184 20 C -0.018 4.018 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.239 0.761 26 H 0.120 0.880 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.526 -6.850 -5.444 9.851 hybrid contribution 0.382 0.841 0.805 1.225 sum -4.144 -6.009 -4.639 8.649 Atomic orbital electron populations 1.70029 1.07214 1.27893 1.50135 1.25696 0.95582 1.02290 0.94062 0.85653 0.78389 0.78948 0.78918 1.19390 1.21191 1.19878 1.21242 0.93333 0.90732 1.51918 0.91792 1.20381 0.94071 0.91720 0.93224 1.23624 0.99859 0.76177 1.00704 1.50568 1.39827 1.05179 1.41316 1.21815 0.84694 0.81407 0.83482 1.90615 1.58110 1.40461 1.58542 1.21123 0.90730 0.83997 0.96282 0.84957 1.86519 1.92554 1.16303 1.39548 1.22873 0.90044 1.03470 1.06623 1.23092 1.00047 0.96774 1.00577 1.23009 0.97567 1.02288 0.95519 1.23423 0.94169 0.92870 0.91322 0.92618 0.94529 0.90877 0.90127 0.76097 0.88021 0.87166 0.87878 0.87536 0.87481 0.89891 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.53 13.29 21.45 0.28 -48.25 16 2 C 0.02 1.23 5.46 84.65 0.46 1.69 16 3 Si 0.96 40.11 29.54 68.60 2.03 42.13 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.53 -26.62 8.77 25.60 0.22 -26.40 16 8 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.03 1.16 3.60 -10.88 -0.04 1.12 16 10 C 0.12 4.77 7.78 86.42 0.67 5.44 16 11 N -0.63 -25.21 3.55 -835.83 -2.97 -28.18 16 12 C 0.50 19.13 7.38 87.65 0.65 19.77 16 13 O -0.59 -26.60 17.05 15.95 0.27 -26.33 16 14 C 0.14 4.26 3.53 29.85 0.11 4.36 16 15 H 0.13 3.72 8.14 -2.39 -0.02 3.71 16 16 O -0.54 -15.58 12.15 -129.99 -1.58 -17.16 16 17 C -0.21 -5.70 5.37 -10.80 -0.06 -5.75 16 18 C -0.17 -3.63 9.74 30.62 0.30 -3.34 16 19 C -0.15 -3.11 10.19 30.62 0.31 -2.80 16 20 C 0.10 4.31 8.39 86.49 0.73 5.03 16 21 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 22 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.07 2.87 6.53 -2.38 -0.02 2.86 16 24 H 0.08 3.20 8.09 -2.39 -0.02 3.18 16 25 H 0.39 9.70 7.31 -74.06 -0.54 9.16 16 26 H 0.10 3.20 6.30 -2.38 -0.02 3.19 16 27 H 0.11 2.11 6.37 -2.39 -0.02 2.10 16 28 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 3.28 8.09 -2.39 -0.02 3.26 16 32 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -58.98 274.78 1.97 -57.01 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.59 Total: 21.63 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 3.35 Total: -0.86 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -2.68 Total: -76.42 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.31 Total: -43.49 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.13 kcal Total: -58.98 1.97 -57.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.930 kcal (2) G-P(sol) polarization free energy of solvation -58.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds