Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48497 * 109.47277 * 274.17569 * 3 2 1 5 5 H 1.48506 * 109.47204 * 34.17143 * 3 2 1 6 6 H 1.48499 * 109.47236 * 154.17503 * 3 2 1 7 7 C 1.38813 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99914 * 163.23203 * 7 2 1 9 9 N 1.36934 * 120.00009 * 343.50654 * 7 2 1 10 10 C 1.47155 * 120.98071 * 332.98893 * 9 7 2 11 11 C 1.52883 * 108.60275 * 230.49739 * 10 9 7 12 12 O 1.42962 * 109.29960 * 307.93514 * 11 10 9 13 13 C 1.42955 * 114.16734 * 62.45048 * 12 11 10 14 14 H 1.09003 * 109.55631 * 57.36666 * 13 12 11 15 15 C 1.50703 * 109.51376 * 177.49745 * 13 12 11 16 16 O 1.20751 * 120.00198 * 19.74262 * 15 13 12 17 17 C 1.50702 * 119.99811 * 199.74542 * 15 13 12 18 18 C 1.53002 * 117.49784 * 223.74216 * 17 15 13 19 19 C 1.53004 * 117.49572 * 155.08425 * 17 15 13 20 20 C 1.47154 * 120.98269 * 153.26466 * 9 7 2 21 21 H 0.97000 * 119.99782 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.68355 * 350.27699 * 10 9 7 23 23 H 1.08995 * 109.68252 * 110.83527 * 10 9 7 24 24 H 1.08998 * 109.57934 * 187.91958 * 11 10 9 25 25 H 1.08998 * 109.40781 * 67.84466 * 11 10 9 26 26 H 1.09000 * 115.55017 * 9.41812 * 17 15 13 27 27 H 1.08993 * 117.49670 * 0.02562 * 18 17 15 28 28 H 1.09001 * 117.49508 * 145.02624 * 18 17 15 29 29 H 1.08999 * 117.49616 * 214.97793 * 19 17 15 30 30 H 1.09001 * 117.49988 * 359.97250 * 19 17 15 31 31 H 1.08998 * 109.68397 * 249.16676 * 20 9 7 32 32 H 1.09001 * 109.67691 * 9.72104 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4094 2.0974 -1.3963 5 1 1.4945 2.6256 0.7864 6 1 3.5891 1.4163 0.6099 7 6 2.0103 -1.2022 -0.0005 8 1 3.0559 -1.2219 -0.2704 9 7 1.3679 -2.3638 0.3356 10 6 0.2000 -2.3518 1.2308 11 6 0.4234 -3.3824 2.3377 12 8 0.7607 -4.6413 1.7501 13 6 1.9759 -4.6289 0.9972 14 1 2.7971 -4.3025 1.6353 15 6 2.2613 -6.0151 0.4792 16 8 1.3714 -6.8281 0.4081 17 6 3.6573 -6.3864 0.0500 18 6 3.8097 -7.1757 -1.2518 19 6 4.0396 -7.8673 0.0944 20 6 1.8287 -3.6616 -0.1828 21 1 -0.4850 0.8401 0.0004 22 1 0.0849 -1.3613 1.6709 23 1 -0.6967 -2.6105 0.6679 24 1 -0.4871 -3.4882 2.9275 25 1 1.2379 -3.0514 2.9819 26 1 4.4325 -5.6591 0.2913 27 1 2.9003 -7.4260 -1.7979 28 1 4.6854 -6.9680 -1.8667 29 1 5.0663 -8.1141 0.3644 30 1 3.2815 -8.5728 0.4344 31 1 1.0986 -4.0543 -0.8906 32 1 2.7915 -3.5379 -0.6785 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000681484800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = -28.445617 kcal Electronic energy + Delta-G solvation = -15814.812534 eV Core-core repulsion = 13163.488217 eV Total energy + Delta-G solvation = -2651.324317 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.86584 -37.95447 -35.93800 -34.45187 -31.58427 -30.62588 -27.43199 -25.30657 -23.16840 -22.83532 -22.49854 -19.88454 -19.10127 -17.13965 -16.40545 -16.02268 -15.01161 -14.90596 -14.55189 -14.37751 -13.91457 -13.45259 -13.06958 -12.76648 -12.73116 -12.27499 -11.62581 -11.21145 -11.00488 -10.77316 -10.69472 -10.55252 -10.48405 -10.34996 -10.08767 -9.84219 -9.17483 -9.06718 -8.57896 -6.80013 -5.88130 -3.33054 2.05958 3.31670 3.38894 3.40881 3.69241 3.82371 4.38353 4.72297 4.75690 4.87557 5.06915 5.27555 5.31213 5.50051 5.52247 5.63629 5.70890 5.78920 5.95459 6.02050 6.10921 6.25745 6.32846 6.42102 6.66276 7.03587 7.49046 7.63693 7.71274 7.92752 8.28487 9.06380 9.68748 10.26124 11.20164 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.038283 B = 0.007437 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.220922 B = 3764.121482 C = 4249.914801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.070 0.930 9 N -0.591 5.591 10 C 0.138 3.862 11 C 0.038 3.962 12 O -0.375 6.375 13 C 0.034 3.966 14 H 0.079 0.921 15 C 0.393 3.607 16 O -0.443 6.443 17 C -0.215 4.215 18 C -0.149 4.149 19 C -0.154 4.154 20 C 0.131 3.869 21 H 0.256 0.744 22 H 0.095 0.905 23 H 0.030 0.970 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.127 0.873 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.030 0.970 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 -9.646 1.537 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.388 4.388 8 H 0.088 0.912 9 N -0.315 5.315 10 C 0.013 3.987 11 C -0.040 4.040 12 O -0.294 6.294 13 C -0.027 4.027 14 H 0.097 0.903 15 C 0.268 3.732 16 O -0.315 6.315 17 C -0.234 4.234 18 C -0.186 4.186 19 C -0.191 4.191 20 C 0.003 3.997 21 H 0.066 0.934 22 H 0.114 0.886 23 H 0.048 0.952 24 H 0.104 0.896 25 H 0.061 0.939 26 H 0.145 0.855 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.048 0.952 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.665 -10.073 1.512 12.172 hybrid contribution 0.582 1.350 0.008 1.470 sum 7.247 -8.723 1.520 11.442 Atomic orbital electron populations 1.70044 1.05338 1.25762 1.53344 1.25080 0.95350 0.98546 1.00524 0.86227 0.79139 0.83332 0.77734 1.21301 1.21417 1.20317 1.19195 0.92583 0.84260 1.42796 0.91212 1.44058 1.33892 1.00932 1.52615 1.21385 0.89267 0.98210 0.89868 1.23316 0.99356 0.84853 0.96475 1.87875 1.40268 1.32775 1.68513 1.22946 0.89118 0.94140 0.96478 0.90317 1.23695 0.87917 0.88104 0.73533 1.90340 1.47439 1.51447 1.42282 1.22771 0.98142 0.97071 1.05436 1.22946 1.04029 1.01666 0.89914 1.22962 1.02853 0.92581 1.00662 1.21306 0.99201 0.87035 0.92117 0.93412 0.88648 0.95187 0.89620 0.93914 0.85477 0.88040 0.87706 0.87928 0.87927 0.95235 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.17 55.49 0.62 -25.28 16 2 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 3 Si 0.91 21.15 29.59 -169.99 -5.03 16.12 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -7.00 9.64 -15.06 -0.15 -7.14 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 9 N -0.59 -14.99 3.05 -172.08 -0.53 -15.52 16 10 C 0.14 3.38 5.41 -3.74 -0.02 3.36 16 11 C 0.04 0.77 6.97 37.10 0.26 1.03 16 12 O -0.38 -8.08 10.00 -54.35 -0.54 -8.62 16 13 C 0.03 0.65 3.12 -27.73 -0.09 0.56 16 14 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 15 C 0.39 6.77 6.18 -29.03 -0.18 6.59 16 16 O -0.44 -8.88 16.69 -13.11 -0.22 -9.10 16 17 C -0.22 -2.74 6.12 -91.77 -0.56 -3.31 16 18 C -0.15 -1.63 10.14 -26.69 -0.27 -1.90 16 19 C -0.15 -1.64 10.05 -26.69 -0.27 -1.91 16 20 C 0.13 2.82 6.01 -3.53 -0.02 2.79 16 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 22 H 0.10 2.50 6.19 -51.93 -0.32 2.18 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.10 1.20 7.89 -51.93 -0.41 0.79 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.35 7.96 -51.93 -0.41 0.93 16 LS Contribution 271.91 15.07 4.10 4.10 Total: -1.00 -31.46 271.91 -7.48 -38.93 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.50 Total: -0.72 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.38 Total: 0.10 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.09 Total: -40.80 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.76 Total: -17.72 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.46 -7.48 -38.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000681484800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.489 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds