Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48497 * 109.47277 * 274.17569 * 3 2 1 5 5 H 1.48506 * 109.47204 * 34.17143 * 3 2 1 6 6 H 1.48499 * 109.47236 * 154.17503 * 3 2 1 7 7 C 1.38813 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99914 * 163.23203 * 7 2 1 9 9 N 1.36934 * 120.00009 * 343.50654 * 7 2 1 10 10 C 1.47155 * 120.98071 * 332.98893 * 9 7 2 11 11 C 1.52883 * 108.60275 * 230.49739 * 10 9 7 12 12 O 1.42962 * 109.29960 * 307.93514 * 11 10 9 13 13 C 1.42955 * 114.16734 * 62.45048 * 12 11 10 14 14 H 1.09003 * 109.55631 * 57.36666 * 13 12 11 15 15 C 1.50703 * 109.51376 * 177.49745 * 13 12 11 16 16 O 1.20751 * 120.00198 * 19.74262 * 15 13 12 17 17 C 1.50702 * 119.99811 * 199.74542 * 15 13 12 18 18 C 1.53002 * 117.49784 * 223.74216 * 17 15 13 19 19 C 1.53004 * 117.49572 * 155.08425 * 17 15 13 20 20 C 1.47154 * 120.98269 * 153.26466 * 9 7 2 21 21 H 0.97000 * 119.99782 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.68355 * 350.27699 * 10 9 7 23 23 H 1.08995 * 109.68252 * 110.83527 * 10 9 7 24 24 H 1.08998 * 109.57934 * 187.91958 * 11 10 9 25 25 H 1.08998 * 109.40781 * 67.84466 * 11 10 9 26 26 H 1.09000 * 115.55017 * 9.41812 * 17 15 13 27 27 H 1.08993 * 117.49670 * 0.02562 * 18 17 15 28 28 H 1.09001 * 117.49508 * 145.02624 * 18 17 15 29 29 H 1.08999 * 117.49616 * 214.97793 * 19 17 15 30 30 H 1.09001 * 117.49988 * 359.97250 * 19 17 15 31 31 H 1.08998 * 109.68397 * 249.16676 * 20 9 7 32 32 H 1.09001 * 109.67691 * 9.72104 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4094 2.0974 -1.3963 5 1 1.4945 2.6256 0.7864 6 1 3.5891 1.4163 0.6099 7 6 2.0103 -1.2022 -0.0005 8 1 3.0559 -1.2219 -0.2704 9 7 1.3679 -2.3638 0.3356 10 6 0.2000 -2.3518 1.2308 11 6 0.4234 -3.3824 2.3377 12 8 0.7607 -4.6413 1.7501 13 6 1.9759 -4.6289 0.9972 14 1 2.7971 -4.3025 1.6353 15 6 2.2613 -6.0151 0.4792 16 8 1.3714 -6.8281 0.4081 17 6 3.6573 -6.3864 0.0500 18 6 3.8097 -7.1757 -1.2518 19 6 4.0396 -7.8673 0.0944 20 6 1.8287 -3.6616 -0.1828 21 1 -0.4850 0.8401 0.0004 22 1 0.0849 -1.3613 1.6709 23 1 -0.6967 -2.6105 0.6679 24 1 -0.4871 -3.4882 2.9275 25 1 1.2379 -3.0514 2.9819 26 1 4.4325 -5.6591 0.2913 27 1 2.9003 -7.4260 -1.7979 28 1 4.6854 -6.9680 -1.8667 29 1 5.0663 -8.1141 0.3644 30 1 3.2815 -8.5728 0.4344 31 1 1.0986 -4.0543 -0.8906 32 1 2.7915 -3.5379 -0.6785 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000681484800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = -47.907393 kcal Electronic energy + Delta-G solvation = -15815.656460 eV Core-core repulsion = 13163.488217 eV Total energy + Delta-G solvation = -2652.168243 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.27115 -39.54639 -37.03583 -36.33220 -33.45908 -32.42036 -29.23323 -26.94917 -24.99541 -24.29451 -23.32325 -21.65499 -20.39698 -18.95612 -17.81667 -17.57456 -16.82412 -16.53429 -16.02186 -15.69191 -15.51179 -15.23504 -14.69365 -14.60766 -14.19185 -13.56794 -13.13753 -12.84672 -12.55594 -12.42808 -12.33478 -12.26414 -12.00103 -11.61997 -11.49752 -11.45037 -10.89525 -10.63530 -10.52291 -8.82046 -7.93643 -5.43192 0.74300 1.48188 1.49576 1.60110 2.34784 2.46417 2.89168 3.21074 3.24868 3.57619 3.77475 3.95808 4.06083 4.10425 4.14510 4.28713 4.41261 4.52346 4.61765 4.74016 4.75674 4.88002 4.95296 5.03118 5.12264 5.22029 5.48346 5.58319 6.09499 6.26376 6.51127 7.01133 7.67991 8.23578 9.13582 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.038283 B = 0.007437 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.220922 B = 3764.121482 C = 4249.914801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.270 4.270 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.144 3.856 11 C 0.049 3.951 12 O -0.393 6.393 13 C 0.032 3.968 14 H 0.101 0.899 15 C 0.397 3.603 16 O -0.480 6.480 17 C -0.228 4.228 18 C -0.143 4.143 19 C -0.139 4.139 20 C 0.131 3.869 21 H 0.252 0.748 22 H 0.073 0.927 23 H -0.004 1.004 24 H 0.109 0.891 25 H 0.058 0.942 26 H 0.152 0.848 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.005 0.995 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.064 -10.150 1.825 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.246 4.246 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.400 4.400 8 H 0.099 0.901 9 N -0.334 5.334 10 C 0.018 3.982 11 C -0.028 4.028 12 O -0.312 6.312 13 C -0.028 4.028 14 H 0.118 0.882 15 C 0.274 3.726 16 O -0.355 6.355 17 C -0.247 4.247 18 C -0.180 4.180 19 C -0.176 4.176 20 C 0.005 3.995 21 H 0.062 0.938 22 H 0.092 0.908 23 H 0.014 0.986 24 H 0.127 0.873 25 H 0.076 0.924 26 H 0.170 0.830 27 H 0.103 0.897 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.106 0.894 31 H 0.023 0.977 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.376 -10.601 1.801 14.266 hybrid contribution -0.271 1.454 -0.135 1.485 sum 9.105 -9.147 1.666 13.013 Atomic orbital electron populations 1.70214 1.07015 1.26253 1.54905 1.25934 0.96086 1.01937 1.00614 0.85136 0.78272 0.78788 0.77460 1.21240 1.21888 1.18723 1.19634 0.93237 0.85026 1.42058 0.90081 1.44335 1.33884 1.01962 1.53187 1.21220 0.88117 0.98306 0.90580 1.23204 1.01100 0.83419 0.95068 1.87871 1.41597 1.32910 1.68805 1.23108 0.88896 0.95267 0.95522 0.88193 1.24055 0.89701 0.86648 0.72238 1.90333 1.49113 1.52107 1.43950 1.22769 0.95435 0.99159 1.07294 1.23099 1.04544 1.00511 0.89818 1.23104 1.04204 0.90397 0.99873 1.21378 0.99298 0.85961 0.92879 0.93848 0.90826 0.98596 0.87297 0.92411 0.83011 0.89676 0.84675 0.84548 0.89367 0.97678 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.24 11.17 21.65 0.24 -55.00 16 2 C -0.05 -2.75 4.95 84.86 0.42 -2.33 16 3 Si 0.98 43.33 29.59 68.60 2.03 45.36 16 4 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.27 -14.48 9.64 84.03 0.81 -13.67 16 8 H 0.08 4.07 7.88 -2.91 -0.02 4.05 16 9 N -0.61 -31.07 3.05 -698.33 -2.13 -33.20 16 10 C 0.14 7.19 5.41 86.22 0.47 7.66 16 11 C 0.05 2.00 6.97 71.94 0.50 2.50 16 12 O -0.39 -16.72 10.00 -130.70 -1.31 -18.02 16 13 C 0.03 1.20 3.12 29.95 0.09 1.29 16 14 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 15 C 0.40 13.19 6.18 29.10 0.18 13.37 16 16 O -0.48 -19.24 16.69 16.85 0.28 -18.96 16 17 C -0.23 -5.14 6.12 -11.54 -0.07 -5.21 16 18 C -0.14 -2.71 10.14 30.62 0.31 -2.40 16 19 C -0.14 -2.52 10.05 30.62 0.31 -2.21 16 20 C 0.13 5.61 6.01 86.35 0.52 6.13 16 21 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 22 H 0.07 3.98 6.19 -2.39 -0.01 3.97 16 23 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 24 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 25 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 28 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.89 7.89 -2.39 -0.02 1.87 16 31 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.09 3.40 7.96 -2.39 -0.02 3.38 16 Total: -1.00 -68.97 271.91 3.75 -65.22 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.10 Total: 9.47 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 3.54 Total: 5.13 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -1.89 Total: -88.20 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.03 Total: -36.98 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -68.97 3.75 -65.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000681484800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.312 kcal (2) G-P(sol) polarization free energy of solvation -68.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds