Wall clock time and date at job start Mon Mar 30 2020 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47395 * 89.99816 * 3 2 1 5 5 H 1.48499 * 109.47097 * 209.99780 * 3 2 1 6 6 H 1.48506 * 109.47093 * 329.99859 * 3 2 1 7 7 C 1.38811 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00034 * 19.23690 * 7 2 1 9 9 N 1.36936 * 120.00084 * 199.23957 * 7 2 1 10 10 C 1.47154 * 120.98456 * 27.18975 * 9 7 2 11 11 C 1.53711 * 108.16117 * 129.43248 * 10 9 7 12 12 O 1.42957 * 109.14602 * 52.54291 * 11 10 9 13 13 C 1.42958 * 114.16762 * 297.28470 * 12 11 10 14 14 H 1.09001 * 109.51212 * 302.66328 * 13 12 11 15 15 C 1.50703 * 109.51568 * 182.50660 * 13 12 11 16 16 O 1.20759 * 119.99823 * 345.25608 * 15 13 12 17 17 C 1.50702 * 119.99980 * 165.25511 * 15 13 12 18 18 C 1.53002 * 117.49636 * 223.74705 * 17 15 13 19 19 C 1.52999 * 117.49545 * 155.09117 * 17 15 13 20 20 C 1.47160 * 120.98225 * 207.47447 * 9 7 2 21 21 H 0.96997 * 120.00018 * 175.15399 * 1 2 3 22 22 H 1.08996 * 109.68348 * 249.21654 * 10 9 7 23 23 H 1.09002 * 109.67870 * 9.76485 * 10 9 7 24 24 H 1.08992 * 109.65935 * 292.57303 * 11 10 9 25 25 H 1.09004 * 109.48166 * 172.39743 * 11 10 9 26 26 H 1.08998 * 115.54810 * 9.41484 * 17 15 13 27 27 H 1.09000 * 117.49812 * 0.02562 * 18 17 15 28 28 H 1.09000 * 117.49901 * 145.01640 * 18 17 15 29 29 H 1.09001 * 117.49058 * 214.97801 * 19 17 15 30 30 H 1.08998 * 117.49841 * 359.97438 * 19 17 15 31 31 H 1.08995 * 109.68066 * 350.23611 * 20 9 7 32 32 H 1.09002 * 109.67727 * 110.78752 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.5154 -2.1115 -0.3072 9 7 3.3222 -1.2351 0.3913 10 6 3.8564 -0.2415 1.3362 11 6 4.5910 -0.9934 2.4577 12 8 5.5402 -1.8909 1.8769 13 6 4.9583 -2.9117 1.0626 14 1 4.2414 -3.4831 1.6521 15 6 6.0408 -3.8299 0.5564 16 8 7.1990 -3.4958 0.6295 17 6 5.6779 -5.1650 -0.0411 18 6 6.5180 -6.3753 0.3715 19 6 6.6629 -5.7858 -1.0337 20 6 4.2412 -2.2615 -0.1260 21 1 -0.4850 -0.8370 -0.0710 22 1 4.5502 0.4211 0.8189 23 1 3.0375 0.3410 1.7583 24 1 3.8728 -1.5579 3.0523 25 1 5.1096 -0.2780 3.0959 26 1 4.6148 -5.3271 -0.2187 27 1 7.3329 -6.2060 1.0754 28 1 6.0077 -7.3339 0.4650 29 1 6.2476 -6.3568 -1.8642 30 1 7.5731 -5.2284 -1.2549 31 1 3.6772 -3.0173 -0.6726 32 1 4.9731 -1.7987 -0.7880 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000681484801.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:37 Heat of formation + Delta-G solvation = -26.743379 kcal Electronic energy + Delta-G solvation = -15887.756489 eV Core-core repulsion = 13236.505986 eV Total energy + Delta-G solvation = -2651.250503 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.00691 -38.20100 -36.03960 -34.68115 -31.78088 -31.20129 -27.54468 -25.38559 -23.46661 -22.58399 -22.50864 -20.24725 -19.17893 -17.57389 -16.74196 -16.24360 -15.57348 -14.84379 -14.63497 -14.59769 -14.14567 -13.69572 -13.27744 -13.06309 -12.62767 -12.53502 -11.74816 -11.68319 -11.49057 -11.05976 -10.76960 -10.60597 -10.47180 -9.95504 -9.88973 -9.43761 -9.35218 -9.21493 -8.53097 -7.18248 -6.35606 -3.44823 1.95083 3.32979 3.49488 3.52763 3.64139 3.75047 4.49161 4.50693 4.65393 4.79493 4.85093 5.03128 5.28765 5.35622 5.44071 5.45752 5.50401 5.70578 5.81535 5.85692 5.88084 5.95642 6.05672 6.11631 6.34526 6.41459 6.62416 7.43786 7.75383 7.81907 8.29775 8.92691 9.44698 10.05428 11.04528 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.041513 B = 0.007845 C = 0.007147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.318474 B = 3568.453705 C = 3916.666093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.014 4.014 3 Si 1.066 2.934 4 H -0.292 1.292 5 H -0.284 1.284 6 H -0.297 1.297 7 C -0.349 4.349 8 H 0.070 0.930 9 N -0.604 5.604 10 C 0.085 3.915 11 C 0.047 3.953 12 O -0.371 6.371 13 C 0.032 3.968 14 H 0.084 0.916 15 C 0.394 3.606 16 O -0.442 6.442 17 C -0.216 4.216 18 C -0.150 4.150 19 C -0.151 4.151 20 C 0.131 3.869 21 H 0.264 0.736 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.129 0.871 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.123 -9.194 1.386 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.216 4.216 3 Si 0.898 3.102 4 H -0.220 1.220 5 H -0.210 1.210 6 H -0.225 1.225 7 C -0.477 4.477 8 H 0.088 0.912 9 N -0.330 5.330 10 C -0.040 4.040 11 C -0.031 4.031 12 O -0.290 6.290 13 C -0.029 4.029 14 H 0.102 0.898 15 C 0.268 3.732 16 O -0.314 6.314 17 C -0.235 4.235 18 C -0.187 4.187 19 C -0.188 4.188 20 C 0.004 3.996 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.147 0.853 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.711 -7.357 1.493 13.080 hybrid contribution -0.350 -1.662 -0.073 1.700 sum 10.361 -9.019 1.419 13.809 Atomic orbital electron populations 1.70911 1.05925 1.30014 1.48827 1.26207 0.96593 1.01275 0.97511 0.83782 0.74704 0.75651 0.76091 1.22044 1.21046 1.22514 1.20255 0.85165 0.95490 1.46772 0.91228 1.44370 1.07636 1.32101 1.48868 1.22195 0.97733 0.92816 0.91241 1.23205 0.91996 0.92429 0.95446 1.87896 1.33185 1.42322 1.65571 1.22978 0.94318 0.89974 0.95589 0.89839 1.23661 0.89217 0.85972 0.74323 1.90348 1.22228 1.73992 1.44856 1.22767 1.00007 0.93741 1.07020 1.22950 1.01530 0.95467 0.98774 1.22966 1.00347 1.02504 0.92953 1.21358 0.93001 0.92999 0.92213 0.92609 0.94337 0.89672 0.92957 0.89095 0.85337 0.88152 0.87736 0.87743 0.87818 0.90763 0.94875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.95 13.70 55.49 0.76 -27.19 16 2 C -0.01 -0.40 5.26 -17.43 -0.09 -0.50 16 3 Si 1.07 26.24 24.64 -169.99 -4.19 22.05 16 4 H -0.29 -6.67 6.51 56.52 0.37 -6.30 16 5 H -0.28 -6.81 6.64 56.52 0.38 -6.44 16 6 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.35 -9.65 9.96 -15.06 -0.15 -9.80 16 8 H 0.07 2.02 8.06 -52.49 -0.42 1.59 16 9 N -0.60 -14.66 2.82 -171.57 -0.48 -15.14 16 10 C 0.09 1.90 4.41 -3.32 -0.01 1.88 16 11 C 0.05 0.89 7.00 37.53 0.26 1.16 16 12 O -0.37 -7.48 9.96 -54.72 -0.55 -8.02 16 13 C 0.03 0.58 3.13 -27.73 -0.09 0.50 16 14 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 15 C 0.39 6.49 6.21 -29.03 -0.18 6.31 16 16 O -0.44 -8.46 16.64 -13.49 -0.22 -8.68 16 17 C -0.22 -2.68 6.11 -91.77 -0.56 -3.24 16 18 C -0.15 -1.53 10.14 -26.69 -0.27 -1.80 16 19 C -0.15 -1.60 10.05 -26.70 -0.27 -1.87 16 20 C 0.13 2.70 6.00 -3.53 -0.02 2.68 16 21 H 0.26 7.93 8.73 -40.82 -0.36 7.57 16 22 H 0.04 0.86 6.89 -51.93 -0.36 0.50 16 23 H 0.09 1.97 4.63 -51.93 -0.24 1.73 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.20 7.89 -51.93 -0.41 0.79 16 31 H 0.07 1.42 7.96 -51.93 -0.41 1.01 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 265.59 15.07 4.00 4.00 Total: -1.00 -32.32 265.59 -6.50 -38.82 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.44 Total: -1.15 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.38 Total: -4.68 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.28 Total: -42.33 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.77 Total: -16.71 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -4.19 Total: 22.05 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.32 -6.50 -38.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000681484801.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.074 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds