Wall clock time and date at job start Mon Mar 30 2020 03:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.50700 * 109.47329 * 179.97438 * 15 14 12 17 17 N 1.33318 * 126.55038 * 269.69257 * 16 15 14 18 18 N 1.28997 * 107.35392 * 179.83146 * 17 16 15 19 19 N 1.28783 * 108.72603 * 0.43380 * 18 17 16 20 20 H 0.97002 * 125.44924 * 179.72556 * 19 18 17 21 21 N 1.28887 * 109.10100 * 359.72143 * 19 18 17 22 22 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 23 23 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 24 24 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 25 25 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 26 26 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 27 27 H 1.08995 * 109.47033 * 300.00320 * 15 14 12 28 28 H 1.08997 * 109.46818 * 59.99864 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6937 -0.2297 4.8812 17 7 2.3064 0.7593 5.5323 18 7 1.5516 1.0928 6.5238 19 7 0.5037 0.3443 6.5158 20 1 -0.2225 0.3862 7.1575 21 7 0.5743 -0.4695 5.5188 22 1 -0.3633 -1.0239 -0.0882 23 1 -0.3633 0.5883 -0.8426 24 1 -0.3633 0.4355 0.9308 25 1 2.9400 -0.1044 -4.2545 26 1 1.1495 0.5389 2.5435 27 1 1.8327 -1.9681 3.6508 28 1 3.2856 -0.9399 3.6505 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351769545.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:37 Heat of formation + Delta-G solvation = 54.783361 kcal Electronic energy + Delta-G solvation = -14963.944296 eV Core-core repulsion = 12244.981466 eV Total energy + Delta-G solvation = -2718.962830 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.097 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.58764 -40.62054 -36.49430 -35.61155 -35.20383 -33.95536 -33.08378 -28.76588 -27.18449 -25.63683 -24.43930 -23.12127 -21.13801 -20.24049 -19.11374 -18.22667 -18.00663 -16.90464 -16.32578 -16.07215 -15.37787 -15.15621 -14.51606 -14.46017 -14.13230 -13.79754 -13.20759 -13.04745 -12.91089 -12.57333 -12.41194 -12.18111 -12.11124 -11.77097 -11.71015 -11.22406 -10.72902 -10.45352 -10.10869 -8.24334 -6.30710 0.04358 0.76113 1.38829 1.40758 1.42411 1.51418 1.88327 2.35795 2.38367 2.75269 3.12938 3.17061 4.04469 4.26626 4.38848 4.44303 4.52866 4.62406 4.75955 4.87125 5.16191 5.38632 5.52073 5.60539 5.61300 6.26878 6.61653 6.83451 7.10263 7.30297 7.46626 8.93438 Molecular weight = 225.10amu Principal moments of inertia in cm(-1) A = 0.047745 B = 0.006162 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.306002 B = 4543.220012 C = 4728.357724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.008 4.008 3 H 0.072 0.928 4 C -0.506 4.506 5 H 0.027 0.973 6 C 0.007 3.993 7 N -0.951 5.951 8 Si 0.944 3.056 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.224 1.224 12 C 0.527 3.473 13 O -0.574 6.574 14 N -0.722 5.722 15 C 0.219 3.781 16 C 0.159 3.841 17 N -0.288 5.288 18 N -0.055 5.055 19 N -0.198 5.198 20 H 0.495 0.505 21 N -0.282 5.282 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.267 0.733 26 H 0.410 0.590 27 H 0.099 0.901 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 6.633 20.708 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.030 4.030 3 H 0.090 0.910 4 C -0.544 4.544 5 H 0.045 0.955 6 C -0.190 4.190 7 N -0.591 5.591 8 Si 0.767 3.233 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.147 1.147 12 C 0.315 3.685 13 O -0.451 6.451 14 N -0.377 5.377 15 C 0.093 3.907 16 C -0.125 4.125 17 N -0.161 5.161 18 N -0.050 5.050 19 N -0.049 5.049 20 H 0.354 0.646 21 N -0.135 5.135 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.246 0.754 27 H 0.117 0.883 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.511 6.350 20.925 23.121 hybrid contribution -0.310 0.284 -0.437 0.607 sum -7.821 6.633 20.488 22.911 Atomic orbital electron populations 1.21830 0.93746 1.01347 1.01568 1.19341 0.96321 0.97024 0.90327 0.91037 1.20896 1.43381 0.93993 0.96177 0.95496 1.26053 0.94020 1.04441 0.94480 1.70070 1.47912 1.38329 1.02785 0.85793 0.80546 0.78748 0.78254 1.19470 1.21218 1.14698 1.21442 0.78452 0.83886 0.84676 1.90592 1.39092 1.28303 1.87112 1.45910 1.54953 1.32796 1.04090 1.19303 1.00002 0.94910 0.76485 1.25398 0.89787 0.96750 1.00517 1.75962 1.24018 1.13126 1.02986 1.78952 0.94487 1.15617 1.15972 1.47904 1.18114 1.19065 1.19827 0.64558 1.74765 1.21211 1.16606 1.00958 0.94006 0.92478 0.90972 0.92433 0.75361 0.88277 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.12 71.98 0.66 -3.99 15 2 C -0.01 -0.37 2.30 -12.28 -0.03 -0.40 15 3 H 0.07 2.97 5.29 -2.39 -0.01 2.96 15 4 C -0.51 -29.67 8.36 25.60 0.21 -29.46 15 5 H 0.03 1.84 7.61 -2.91 -0.02 1.82 15 6 C 0.01 0.39 5.47 84.66 0.46 0.85 15 7 N -0.95 -60.60 13.96 21.45 0.30 -60.30 15 8 Si 0.94 42.26 26.99 68.60 1.85 44.11 15 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 15 11 H -0.22 -8.53 6.82 99.48 0.68 -7.85 15 12 C 0.53 22.35 7.15 87.66 0.63 22.98 15 13 O -0.57 -29.77 15.77 -3.04 -0.05 -29.82 15 14 N -0.72 -22.00 5.41 -466.80 -2.53 -24.53 15 15 C 0.22 5.83 6.30 85.63 0.54 6.37 15 16 C 0.16 3.64 7.74 138.55 1.07 4.71 15 17 N -0.29 -6.98 12.50 -51.26 -0.64 -7.63 15 18 N -0.06 -1.05 13.48 37.02 0.50 -0.55 15 19 N -0.20 -2.55 7.91 37.00 0.29 -2.25 15 20 H 0.50 1.24 8.96 -347.66 -3.12 -1.88 15 21 N -0.28 -5.30 12.36 -51.20 -0.63 -5.94 15 22 H 0.04 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.07 1.96 7.43 -2.39 -0.02 1.95 15 25 H 0.27 15.77 8.31 -92.71 -0.77 15.00 15 26 H 0.41 10.28 7.82 -92.71 -0.73 9.56 15 27 H 0.10 2.59 8.14 -2.39 -0.02 2.57 15 28 H 0.10 2.65 8.14 -2.39 -0.02 2.63 15 Total: -1.00 -78.55 253.84 -0.01 -78.56 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -2.65 Total: 7.29 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 3.54 Total: 1.06 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -2.71 Total: -101.20 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.05 Total: -29.82 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.85 Total: 44.11 kcal Total: -78.55 -0.01 -78.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351769545.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.347 kcal (2) G-P(sol) polarization free energy of solvation -78.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds