Wall clock time and date at job start Mon Mar 30 2020 03:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99717 * 2 1 4 4 H 1.48490 * 109.47892 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47264 * 120.00368 * 3 2 1 6 6 H 1.48510 * 109.46852 * 239.99469 * 3 2 1 7 7 C 1.37877 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99324 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99998 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46827 * 146.39139 * 9 7 2 11 11 C 1.46900 * 111.00036 * 278.31361 * 10 9 7 12 12 C 1.53001 * 117.49574 * 143.32278 * 11 10 9 13 13 C 1.52997 * 117.49513 * 74.66415 * 11 10 9 14 14 C 1.46904 * 110.99782 * 154.36043 * 10 9 7 15 15 H 1.08997 * 110.43153 * 156.82041 * 14 10 9 16 16 C 1.54892 * 110.48629 * 34.27956 * 14 10 9 17 17 C 1.54884 * 102.75035 * 203.37558 * 16 14 10 18 18 C 1.54275 * 104.19419 * 37.94308 * 17 16 14 19 19 C 1.53876 * 106.59575 * 336.39077 * 18 17 16 20 20 H 1.09003 * 110.02876 * 240.71552 * 19 18 17 21 21 O 1.42900 * 110.03099 * 119.28424 * 19 18 17 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47137 * 266.38935 * 9 7 2 24 24 H 1.08998 * 109.47696 * 26.39220 * 9 7 2 25 25 H 1.08997 * 115.55170 * 288.99723 * 11 10 9 26 26 H 1.09002 * 117.50120 * 0.02562 * 12 11 10 27 27 H 1.08997 * 117.49588 * 145.02113 * 12 11 10 28 28 H 1.09000 * 117.50111 * 214.97472 * 13 11 10 29 29 H 1.09000 * 117.50304 * 359.97438 * 13 11 10 30 30 H 1.08996 * 110.75521 * 321.69366 * 16 14 10 31 31 H 1.09004 * 110.75192 * 85.06175 * 16 14 10 32 32 H 1.08998 * 110.48702 * 156.62364 * 17 16 14 33 33 H 1.09000 * 110.49106 * 279.13645 * 17 16 14 34 34 H 1.08997 * 110.02837 * 95.67199 * 18 17 16 35 35 H 1.08998 * 110.03006 * 217.05742 * 18 17 16 36 36 H 0.96707 * 113.99708 * 62.83014 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.0054 -3.5001 -0.7656 11 6 1.7668 -3.3491 -2.2072 12 6 2.9460 -3.6027 -3.1487 13 6 2.4450 -2.1751 -2.9162 14 6 1.6797 -4.8608 -0.3178 15 1 1.8943 -5.5823 -1.1060 16 6 0.1934 -4.9499 0.1089 17 6 0.1864 -6.1628 1.0721 18 6 1.5136 -6.0369 1.8485 19 6 2.4630 -5.2091 0.9647 20 1 3.3469 -5.7958 0.7146 21 8 2.8456 -4.0120 1.6449 22 1 -0.4850 -0.8400 0.0004 23 1 1.1249 -2.8459 1.0262 24 1 0.2723 -2.3536 -0.4567 25 1 0.7751 -3.6408 -2.5527 26 1 3.8985 -3.8821 -2.6984 27 1 2.7298 -4.0610 -4.1137 28 1 1.8996 -1.6947 -3.7285 29 1 3.0677 -1.5145 -2.3129 30 1 -0.1145 -4.0424 0.6282 31 1 -0.4455 -5.1382 -0.7540 32 1 -0.6617 -6.1034 1.7542 33 1 0.1581 -7.0963 0.5100 34 1 1.3447 -5.5256 2.7962 35 1 1.9363 -7.0255 2.0280 36 1 3.3422 -4.1647 2.4606 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044415028.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:21 Heat of formation + Delta-G solvation = -15.022195 kcal Electronic energy + Delta-G solvation = -16692.931339 eV Core-core repulsion = 14178.022200 eV Total energy + Delta-G solvation = -2514.909139 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.08364 -36.60946 -34.36594 -33.34034 -31.75438 -27.37014 -27.26424 -25.11911 -22.52330 -21.50065 -20.67107 -19.95337 -18.73349 -17.14998 -16.36828 -15.43706 -14.76959 -14.56078 -14.13640 -13.61623 -13.35911 -13.23400 -12.55617 -12.34107 -11.91106 -11.36932 -11.13104 -10.91335 -10.79042 -10.72829 -10.61497 -10.46297 -10.16527 -9.96891 -9.85451 -9.54169 -9.30458 -9.12623 -8.44499 -8.16148 -7.06998 -6.13198 -3.78691 3.53122 3.55078 3.73592 4.55187 4.64746 4.71458 4.80502 4.92869 5.11449 5.30492 5.56893 5.61658 5.70964 5.76222 5.80306 5.81403 5.88568 6.00543 6.08400 6.20805 6.22540 6.25229 6.28710 6.47351 6.57244 6.71951 6.78651 7.14444 7.25849 7.36809 8.14979 8.25677 8.40334 8.58279 8.83842 9.12511 9.88708 11.22443 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.010232 C = 0.008783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.184326 B = 2735.864090 C = 3187.365938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 1.066 2.934 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.555 4.555 8 H 0.052 0.948 9 C 0.186 3.814 10 N -0.483 5.483 11 C 0.021 3.979 12 C -0.187 4.187 13 C -0.144 4.144 14 C 0.089 3.911 15 H 0.076 0.924 16 C -0.163 4.163 17 C -0.117 4.117 18 C -0.158 4.158 19 C 0.111 3.889 20 H 0.046 0.954 21 O -0.520 6.520 22 H 0.264 0.736 23 H 0.035 0.965 24 H -0.006 1.006 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.305 -11.471 -0.127 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.895 3.105 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.595 4.595 8 H 0.070 0.930 9 C 0.062 3.938 10 N -0.206 5.206 11 C -0.088 4.088 12 C -0.225 4.225 13 C -0.181 4.181 14 C -0.021 4.021 15 H 0.094 0.906 16 C -0.201 4.201 17 C -0.155 4.155 18 C -0.196 4.196 19 C 0.051 3.949 20 H 0.064 0.936 21 O -0.322 6.322 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.012 0.988 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.306 -9.437 -0.550 10.015 hybrid contribution -0.464 -2.245 0.302 2.312 sum 2.842 -11.682 -0.248 12.026 Atomic orbital electron populations 1.70821 1.06871 1.30116 1.48671 1.25734 0.96552 1.02343 0.94553 0.83595 0.74830 0.75684 0.76401 1.21186 1.21653 1.21636 1.21873 0.94576 0.90842 1.52173 0.93007 1.19972 0.91314 0.90083 0.92419 1.62023 1.57767 1.00773 1.00033 1.22105 0.93309 1.04515 0.88875 1.22995 0.99158 1.01167 0.99197 1.22864 1.03323 0.90786 1.01115 1.22531 0.91831 0.93393 0.94388 0.90633 1.23349 0.98439 0.99300 0.99062 1.22184 0.97003 0.98215 0.98137 1.22972 0.96845 0.99975 0.99812 1.22338 0.94719 0.85861 0.92004 0.93621 1.87056 1.76153 1.29145 1.39854 0.92429 0.94739 0.98826 0.91973 0.89152 0.90372 0.90338 0.87003 0.89370 0.92480 0.92120 0.92203 0.91049 0.92135 0.80083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.68 13.63 55.43 0.76 -27.93 16 2 C 0.01 0.30 5.46 -17.82 -0.10 0.20 16 3 Si 1.07 26.11 29.90 -169.99 -5.08 21.03 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.56 -15.92 7.43 -34.44 -0.26 -16.18 16 8 H 0.05 1.54 7.77 -52.49 -0.41 1.13 16 9 C 0.19 4.85 2.71 -4.98 -0.01 4.84 16 10 N -0.48 -10.75 4.06 -218.18 -0.89 -11.64 16 11 C 0.02 0.44 4.66 -67.71 -0.32 0.13 16 12 C -0.19 -3.35 10.46 -26.69 -0.28 -3.63 16 13 C -0.14 -3.00 9.68 -26.69 -0.26 -3.25 16 14 C 0.09 1.64 2.89 -66.05 -0.19 1.45 16 15 H 0.08 1.29 7.87 -51.93 -0.41 0.88 16 16 C -0.16 -2.86 5.89 -24.74 -0.15 -3.01 16 17 C -0.12 -1.65 6.83 -25.07 -0.17 -1.82 16 18 C -0.16 -2.17 6.61 -25.61 -0.17 -2.34 16 19 C 0.11 1.83 4.15 -25.62 -0.11 1.73 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 O -0.52 -9.93 10.30 -35.23 -0.36 -10.30 16 22 H 0.26 8.21 6.50 -40.82 -0.27 7.94 16 23 H 0.03 0.94 5.13 -51.93 -0.27 0.68 16 24 H -0.01 -0.17 5.74 -51.93 -0.30 -0.47 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 29 H 0.11 2.63 6.98 -51.93 -0.36 2.27 16 30 H 0.09 1.84 5.34 -51.93 -0.28 1.56 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.00 7.95 -51.93 -0.41 0.58 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.35 5.05 9.11 45.56 0.42 5.47 16 LS Contribution 281.67 15.07 4.24 4.24 Total: -1.00 -31.95 281.67 -8.22 -40.17 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.88 Total: 6.31 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -2.00 Total: -21.89 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.13 Total: -39.56 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.36 Total: -10.30 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.03 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.95 -8.22 -40.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415028.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.143 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds