Wall clock time and date at job start Mon Mar 30 2020 03:05:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31521 * 1
3 3 Si 1.86795 * 119.99717 * 2 1
4 4 H 1.48490 * 109.47892 * 359.97438 * 3 2 1
5 5 H 1.48506 * 109.47264 * 120.00368 * 3 2 1
6 6 H 1.48510 * 109.46852 * 239.99469 * 3 2 1
7 7 C 1.37877 * 119.99643 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99324 * 179.97438 * 7 2 1
9 9 C 1.50696 * 119.99998 * 0.02562 * 7 2 1
10 10 N 1.46902 * 109.46827 * 146.39139 * 9 7 2
11 11 C 1.46900 * 111.00036 * 278.31361 * 10 9 7
12 12 C 1.53001 * 117.49574 * 143.32278 * 11 10 9
13 13 C 1.52997 * 117.49513 * 74.66415 * 11 10 9
14 14 C 1.46904 * 110.99782 * 154.36043 * 10 9 7
15 15 H 1.08997 * 110.43153 * 156.82041 * 14 10 9
16 16 C 1.54892 * 110.48629 * 34.27956 * 14 10 9
17 17 C 1.54884 * 102.75035 * 203.37558 * 16 14 10
18 18 C 1.54275 * 104.19419 * 37.94308 * 17 16 14
19 19 C 1.53876 * 106.59575 * 336.39077 * 18 17 16
20 20 H 1.09003 * 110.02876 * 240.71552 * 19 18 17
21 21 O 1.42900 * 110.03099 * 119.28424 * 19 18 17
22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3
23 23 H 1.09003 * 109.47137 * 266.38935 * 9 7 2
24 24 H 1.08998 * 109.47696 * 26.39220 * 9 7 2
25 25 H 1.08997 * 115.55170 * 288.99723 * 11 10 9
26 26 H 1.09002 * 117.50120 * 0.02562 * 12 11 10
27 27 H 1.08997 * 117.49588 * 145.02113 * 12 11 10
28 28 H 1.09000 * 117.50111 * 214.97472 * 13 11 10
29 29 H 1.09000 * 117.50304 * 359.97438 * 13 11 10
30 30 H 1.08996 * 110.75521 * 321.69366 * 16 14 10
31 31 H 1.09004 * 110.75192 * 85.06175 * 16 14 10
32 32 H 1.08998 * 110.48702 * 156.62364 * 17 16 14
33 33 H 1.09000 * 110.49106 * 279.13645 * 17 16 14
34 34 H 1.08997 * 110.02837 * 95.67199 * 18 17 16
35 35 H 1.08998 * 110.03006 * 217.05742 * 18 17 16
36 36 H 0.96707 * 113.99708 * 62.83014 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 1.2843 2.7465 -0.0006
5 1 3.1030 1.6964 1.2125
6 1 3.1030 1.6963 -1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1940 0.0001
9 6 1.2510 -2.4991 0.0005
10 7 2.0054 -3.5001 -0.7656
11 6 1.7668 -3.3491 -2.2072
12 6 2.9460 -3.6027 -3.1487
13 6 2.4450 -2.1751 -2.9162
14 6 1.6797 -4.8608 -0.3178
15 1 1.8943 -5.5823 -1.1060
16 6 0.1934 -4.9499 0.1089
17 6 0.1864 -6.1628 1.0721
18 6 1.5136 -6.0369 1.8485
19 6 2.4630 -5.2091 0.9647
20 1 3.3469 -5.7958 0.7146
21 8 2.8456 -4.0120 1.6449
22 1 -0.4850 -0.8400 0.0004
23 1 1.1249 -2.8459 1.0262
24 1 0.2723 -2.3536 -0.4567
25 1 0.7751 -3.6408 -2.5527
26 1 3.8985 -3.8821 -2.6984
27 1 2.7298 -4.0610 -4.1137
28 1 1.8996 -1.6947 -3.7285
29 1 3.0677 -1.5145 -2.3129
30 1 -0.1145 -4.0424 0.6282
31 1 -0.4455 -5.1382 -0.7540
32 1 -0.6617 -6.1034 1.7542
33 1 0.1581 -7.0963 0.5100
34 1 1.3447 -5.5256 2.7962
35 1 1.9363 -7.0255 2.0280
36 1 3.3422 -4.1647 2.4606
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000044415028.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:21
Heat of formation + Delta-G solvation = -15.022195 kcal
Electronic energy + Delta-G solvation = -16692.931339 eV
Core-core repulsion = 14178.022200 eV
Total energy + Delta-G solvation = -2514.909139 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.08364 -36.60946 -34.36594 -33.34034 -31.75438 -27.37014 -27.26424 -25.11911
-22.52330 -21.50065 -20.67107 -19.95337 -18.73349 -17.14998 -16.36828 -15.43706
-14.76959 -14.56078 -14.13640 -13.61623 -13.35911 -13.23400 -12.55617 -12.34107
-11.91106 -11.36932 -11.13104 -10.91335 -10.79042 -10.72829 -10.61497 -10.46297
-10.16527 -9.96891 -9.85451 -9.54169 -9.30458 -9.12623 -8.44499 -8.16148
-7.06998 -6.13198 -3.78691 3.53122 3.55078 3.73592 4.55187 4.64746
4.71458 4.80502 4.92869 5.11449 5.30492 5.56893 5.61658 5.70964
5.76222 5.80306 5.81403 5.88568 6.00543 6.08400 6.20805 6.22540
6.25229 6.28710 6.47351 6.57244 6.71951 6.78651 7.14444 7.25849
7.36809 8.14979 8.25677 8.40334 8.58279 8.83842 9.12511 9.88708
11.22443
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.026133 B = 0.010232 C = 0.008783
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1071.184326 B = 2735.864090 C = 3187.365938
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.010 3.990
3 Si 1.066 2.934
4 H -0.286 1.286
5 H -0.290 1.290
6 H -0.290 1.290
7 C -0.555 4.555
8 H 0.052 0.948
9 C 0.186 3.814
10 N -0.483 5.483
11 C 0.021 3.979
12 C -0.187 4.187
13 C -0.144 4.144
14 C 0.089 3.911
15 H 0.076 0.924
16 C -0.163 4.163
17 C -0.117 4.117
18 C -0.158 4.158
19 C 0.111 3.889
20 H 0.046 0.954
21 O -0.520 6.520
22 H 0.264 0.736
23 H 0.035 0.965
24 H -0.006 1.006
25 H 0.063 0.937
26 H 0.090 0.910
27 H 0.078 0.922
28 H 0.078 0.922
29 H 0.112 0.888
30 H 0.088 0.912
31 H 0.056 0.944
32 H 0.060 0.940
33 H 0.059 0.941
34 H 0.071 0.929
35 H 0.060 0.940
36 H 0.355 0.645
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.305 -11.471 -0.127 11.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.192 4.192
3 Si 0.895 3.105
4 H -0.212 1.212
5 H -0.217 1.217
6 H -0.216 1.216
7 C -0.595 4.595
8 H 0.070 0.930
9 C 0.062 3.938
10 N -0.206 5.206
11 C -0.088 4.088
12 C -0.225 4.225
13 C -0.181 4.181
14 C -0.021 4.021
15 H 0.094 0.906
16 C -0.201 4.201
17 C -0.155 4.155
18 C -0.196 4.196
19 C 0.051 3.949
20 H 0.064 0.936
21 O -0.322 6.322
22 H 0.076 0.924
23 H 0.053 0.947
24 H 0.012 0.988
25 H 0.080 0.920
26 H 0.108 0.892
27 H 0.096 0.904
28 H 0.097 0.903
29 H 0.130 0.870
30 H 0.106 0.894
31 H 0.075 0.925
32 H 0.079 0.921
33 H 0.078 0.922
34 H 0.090 0.910
35 H 0.079 0.921
36 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges 3.306 -9.437 -0.550 10.015
hybrid contribution -0.464 -2.245 0.302 2.312
sum 2.842 -11.682 -0.248 12.026
Atomic orbital electron populations
1.70821 1.06871 1.30116 1.48671 1.25734 0.96552 1.02343 0.94553
0.83595 0.74830 0.75684 0.76401 1.21186 1.21653 1.21636 1.21873
0.94576 0.90842 1.52173 0.93007 1.19972 0.91314 0.90083 0.92419
1.62023 1.57767 1.00773 1.00033 1.22105 0.93309 1.04515 0.88875
1.22995 0.99158 1.01167 0.99197 1.22864 1.03323 0.90786 1.01115
1.22531 0.91831 0.93393 0.94388 0.90633 1.23349 0.98439 0.99300
0.99062 1.22184 0.97003 0.98215 0.98137 1.22972 0.96845 0.99975
0.99812 1.22338 0.94719 0.85861 0.92004 0.93621 1.87056 1.76153
1.29145 1.39854 0.92429 0.94739 0.98826 0.91973 0.89152 0.90372
0.90338 0.87003 0.89370 0.92480 0.92120 0.92203 0.91049 0.92135
0.80083
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.68 13.63 55.43 0.76 -27.93 16
2 C 0.01 0.30 5.46 -17.82 -0.10 0.20 16
3 Si 1.07 26.11 29.90 -169.99 -5.08 21.03 16
4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16
7 C -0.56 -15.92 7.43 -34.44 -0.26 -16.18 16
8 H 0.05 1.54 7.77 -52.49 -0.41 1.13 16
9 C 0.19 4.85 2.71 -4.98 -0.01 4.84 16
10 N -0.48 -10.75 4.06 -218.18 -0.89 -11.64 16
11 C 0.02 0.44 4.66 -67.71 -0.32 0.13 16
12 C -0.19 -3.35 10.46 -26.69 -0.28 -3.63 16
13 C -0.14 -3.00 9.68 -26.69 -0.26 -3.25 16
14 C 0.09 1.64 2.89 -66.05 -0.19 1.45 16
15 H 0.08 1.29 7.87 -51.93 -0.41 0.88 16
16 C -0.16 -2.86 5.89 -24.74 -0.15 -3.01 16
17 C -0.12 -1.65 6.83 -25.07 -0.17 -1.82 16
18 C -0.16 -2.17 6.61 -25.61 -0.17 -2.34 16
19 C 0.11 1.83 4.15 -25.62 -0.11 1.73 16
20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
21 O -0.52 -9.93 10.30 -35.23 -0.36 -10.30 16
22 H 0.26 8.21 6.50 -40.82 -0.27 7.94 16
23 H 0.03 0.94 5.13 -51.93 -0.27 0.68 16
24 H -0.01 -0.17 5.74 -51.93 -0.30 -0.47 16
25 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
26 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16
27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
28 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16
29 H 0.11 2.63 6.98 -51.93 -0.36 2.27 16
30 H 0.09 1.84 5.34 -51.93 -0.28 1.56 16
31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.07 1.00 7.95 -51.93 -0.41 0.58 16
35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.35 5.05 9.11 45.56 0.42 5.47 16
LS Contribution 281.67 15.07 4.24 4.24
Total: -1.00 -31.95 281.67 -8.22 -40.17
By element:
Atomic # 1 Polarization: 11.19 SS G_CDS: -4.88 Total: 6.31 kcal
Atomic # 6 Polarization: -19.88 SS G_CDS: -2.00 Total: -21.89 kcal
Atomic # 7 Polarization: -39.43 SS G_CDS: -0.13 Total: -39.56 kcal
Atomic # 8 Polarization: -9.93 SS G_CDS: -0.36 Total: -10.30 kcal
Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.03 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -31.95 -8.22 -40.17 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044415028.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.143 kcal
(2) G-P(sol) polarization free energy of solvation -31.946 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.803 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.022 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds