Wall clock time and date at job start Mon Mar 30 2020 02:44:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86802 * 119.99833 * 2 1
4 4 H 1.48496 * 109.47062 * 269.99707 * 3 2 1
5 5 H 1.48493 * 109.47383 * 29.99752 * 3 2 1
6 6 H 1.48508 * 109.46991 * 150.00338 * 3 2 1
7 7 C 1.37881 * 120.00336 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00395 * 180.02562 * 7 2 1
9 9 C 1.50707 * 119.99611 * 0.02562 * 7 2 1
10 10 C 1.50698 * 109.46690 * 180.02562 * 9 7 2
11 11 O 1.21281 * 120.00275 * 359.97438 * 10 9 7
12 12 N 1.34777 * 119.99815 * 180.02562 * 10 9 7
13 13 C 1.46503 * 119.99965 * 180.02562 * 12 10 9
14 14 C 1.54065 * 108.87405 * 277.96907 * 13 12 10
15 15 C 1.54066 * 112.81762 * 197.50625 * 14 13 12
16 16 C 1.50470 * 112.49875 * 318.28617 * 15 14 13
17 17 C 1.54246 * 108.51998 * 94.14981 * 16 15 14
18 18 C 1.45537 * 112.40731 * 280.01038 * 17 16 15
19 19 C 1.50473 * 108.87630 * 154.99590 * 13 12 10
20 20 H 0.97000 * 120.00375 * 0.02562 * 1 2 3
21 21 H 1.08997 * 109.47200 * 59.99894 * 9 7 2
22 22 H 1.09000 * 109.46967 * 299.99429 * 9 7 2
23 23 H 0.96996 * 120.00099 * 359.97438 * 12 10 9
24 24 H 1.08996 * 108.77304 * 36.48071 * 13 12 10
25 25 H 1.09005 * 108.81720 * 318.37164 * 14 13 12
26 26 H 1.09004 * 108.81387 * 76.75411 * 14 13 12
27 27 H 1.08997 * 108.87949 * 197.51000 * 15 14 13
28 28 H 1.09001 * 108.87760 * 79.06417 * 15 14 13
29 29 H 1.09003 * 109.63195 * 334.43897 * 16 15 14
30 30 H 1.09001 * 109.62960 * 213.85940 * 16 15 14
31 31 H 1.09001 * 108.89247 * 40.76541 * 17 16 15
32 32 H 1.09004 * 108.89281 * 159.35535 * 17 16 15
33 33 H 1.09000 * 108.89458 * 182.68905 * 18 17 16
34 34 H 1.08998 * 108.89747 * 301.18352 * 18 17 16
35 35 H 1.09006 * 109.62936 * 95.21532 * 19 13 12
36 36 H 1.08998 * 109.78811 * 334.73047 * 19 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4465 2.6527 0.6999
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2304 -3.6446 0.0018
11 8 3.4227 -3.4229 0.0022
12 7 1.7811 -4.9153 0.0015
13 6 2.7332 -6.0288 0.0033
14 6 3.2129 -6.2767 -1.4396
15 6 3.8635 -7.6611 -1.6234
16 6 4.7657 -8.0301 -0.4772
17 6 3.9546 -8.8632 0.5363
18 6 3.1239 -8.0344 1.3971
19 6 2.0679 -7.2371 0.6045
20 1 -0.4851 0.8400 -0.0004
21 1 0.6247 -2.5571 -0.8896
22 1 0.6241 -2.5568 0.8903
23 1 0.8275 -5.0926 0.0008
24 1 3.5909 -5.7559 0.6181
25 1 2.3591 -6.1973 -2.1125
26 1 3.9409 -5.5099 -1.7047
27 1 4.4468 -7.6572 -2.5442
28 1 3.0775 -8.4115 -1.7093
29 1 5.1343 -7.1246 0.0049
30 1 5.6051 -8.6190 -0.8468
31 1 3.3152 -9.5575 -0.0090
32 1 4.6453 -9.4335 1.1574
33 1 2.6152 -8.6738 2.1186
34 1 3.7624 -7.3350 1.9367
35 1 1.6571 -7.8617 -0.1889
36 1 1.2676 -6.9228 1.2743
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000049811375.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:48
Heat of formation + Delta-G solvation = -69.216721 kcal
Electronic energy + Delta-G solvation = -15792.178002 eV
Core-core repulsion = 13274.918812 eV
Total energy + Delta-G solvation = -2517.259190 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.54790 -37.78217 -34.07314 -32.88090 -32.30513 -30.44607 -28.46902 -24.90202
-24.40461 -22.95076 -20.76970 -19.49584 -19.18775 -16.46821 -16.12710 -15.66898
-15.19818 -14.58190 -14.26330 -13.97378 -13.88042 -13.59111 -13.04227 -12.62427
-12.19115 -12.08668 -11.86223 -11.33969 -11.23191 -10.86462 -10.75501 -10.72814
-10.55738 -10.39740 -10.36298 -10.14965 -9.91158 -9.23224 -8.55500 -8.42464
-8.32117 -6.02577 -4.01692 3.36944 3.41980 3.49334 3.78961 3.97075
4.51715 4.58151 4.71168 4.94466 5.16433 5.19345 5.24506 5.35703
5.37225 5.44750 5.60792 5.74304 5.87161 5.96320 6.01605 6.08710
6.12561 6.18998 6.28944 6.32023 6.34042 6.53823 6.61550 7.16654
7.27166 7.37754 7.99511 8.12637 8.51853 9.09427 9.32208 9.63413
11.09932
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.055020 B = 0.005435 C = 0.005273
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 508.781566 B = 5150.405850 C = 5308.977430
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.054 3.946
3 Si 0.901 3.099
4 H -0.280 1.280
5 H -0.287 1.287
6 H -0.272 1.272
7 C -0.506 4.506
8 H 0.075 0.925
9 C 0.004 3.996
10 C 0.514 3.486
11 O -0.547 6.547
12 N -0.748 5.748
13 C 0.147 3.853
14 C -0.128 4.128
15 C -0.113 4.113
16 C -0.122 4.122
17 C -0.116 4.116
18 C -0.116 4.116
19 C -0.124 4.124
20 H 0.261 0.739
21 H 0.046 0.954
22 H 0.046 0.954
23 H 0.394 0.606
24 H 0.079 0.921
25 H 0.060 0.940
26 H 0.066 0.934
27 H 0.056 0.944
28 H 0.058 0.942
29 H 0.069 0.931
30 H 0.059 0.941
31 H 0.058 0.942
32 H 0.056 0.944
33 H 0.059 0.941
34 H 0.063 0.937
35 H 0.068 0.932
36 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.318 -17.555 -0.138 17.866
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.542 5.542
2 C -0.147 4.147
3 Si 0.729 3.271
4 H -0.206 1.206
5 H -0.213 1.213
6 H -0.197 1.197
7 C -0.545 4.545
8 H 0.093 0.907
9 C -0.036 4.036
10 C 0.304 3.696
11 O -0.423 6.423
12 N -0.402 5.402
13 C 0.042 3.958
14 C -0.167 4.167
15 C -0.151 4.151
16 C -0.160 4.160
17 C -0.154 4.154
18 C -0.154 4.154
19 C -0.162 4.162
20 H 0.070 0.930
21 H 0.064 0.936
22 H 0.064 0.936
23 H 0.227 0.773
24 H 0.097 0.903
25 H 0.079 0.921
26 H 0.085 0.915
27 H 0.075 0.925
28 H 0.077 0.923
29 H 0.088 0.912
30 H 0.078 0.922
31 H 0.077 0.923
32 H 0.075 0.925
33 H 0.078 0.922
34 H 0.082 0.918
35 H 0.087 0.913
36 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 4.050 -17.242 -0.127 17.711
hybrid contribution -0.168 0.810 -0.076 0.831
sum 3.882 -16.431 -0.203 16.885
Atomic orbital electron populations
1.69959 1.06041 1.26834 1.51351 1.25010 0.94899 0.99459 0.95297
0.86438 0.79860 0.82703 0.78142 1.20639 1.21291 1.19686 1.21181
0.94252 0.89183 1.49850 0.90729 1.19240 0.94223 0.90764 0.99339
1.21978 0.91047 0.83607 0.73008 1.90519 1.18038 1.84691 1.49049
1.46581 1.09293 1.06022 1.78292 1.20646 0.93110 0.86107 0.95966
1.22324 1.00726 0.96765 0.96917 1.21288 0.98639 0.96970 0.98194
1.21391 0.97835 1.00239 0.96499 1.20497 0.98524 0.98289 0.98057
1.20429 0.97629 0.99103 0.98268 1.21653 0.98277 0.96536 0.99750
0.92963 0.93588 0.93588 0.77273 0.90315 0.92143 0.91549 0.92484
0.92328 0.91235 0.92173 0.92291 0.92523 0.92200 0.91847 0.91311
0.91065
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16
2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
3 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16
4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16
7 C -0.51 -14.95 8.92 -34.44 -0.31 -15.26 16
8 H 0.07 2.30 6.75 -52.49 -0.35 1.94 16
9 C 0.00 0.09 5.46 -29.03 -0.16 -0.07 16
10 C 0.51 11.89 7.74 -10.99 -0.08 11.80 16
11 O -0.55 -14.45 15.13 5.56 0.08 -14.37 16
12 N -0.75 -13.07 4.95 -54.50 -0.27 -13.34 16
13 C 0.15 2.19 1.94 -68.64 -0.13 2.06 16
14 C -0.13 -1.83 5.37 -25.62 -0.14 -1.97 16
15 C -0.11 -1.25 5.31 -27.44 -0.15 -1.40 16
16 C -0.12 -1.28 5.61 -27.34 -0.15 -1.43 16
17 C -0.12 -1.08 5.26 -29.60 -0.16 -1.24 16
18 C -0.12 -1.19 5.26 -29.60 -0.16 -1.35 16
19 C -0.12 -1.41 5.17 -27.34 -0.14 -1.55 16
20 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
21 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16
22 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16
23 H 0.39 5.86 8.48 -40.82 -0.35 5.51 16
24 H 0.08 1.36 6.08 -51.93 -0.32 1.04 16
25 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16
26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16
27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
28 H 0.06 0.58 6.63 -51.93 -0.34 0.24 16
29 H 0.07 0.85 6.98 -51.93 -0.36 0.48 16
30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16
32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
34 H 0.06 0.72 7.47 -51.93 -0.39 0.33 16
35 H 0.07 0.71 6.98 -51.93 -0.36 0.34 16
36 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16
LS Contribution 283.84 15.07 4.28 4.28
Total: -1.00 -32.20 283.84 -7.65 -39.85
By element:
Atomic # 1 Polarization: 6.94 SS G_CDS: -5.79 Total: 1.16 kcal
Atomic # 6 Polarization: -7.26 SS G_CDS: -1.67 Total: -8.93 kcal
Atomic # 7 Polarization: -39.86 SS G_CDS: 0.47 Total: -39.39 kcal
Atomic # 8 Polarization: -14.45 SS G_CDS: 0.08 Total: -14.37 kcal
Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -32.20 -7.65 -39.85 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000049811375.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.370 kcal
(2) G-P(sol) polarization free energy of solvation -32.198 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds