Wall clock time and date at job start Mon Mar 30 2020 02:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47062 * 269.99707 * 3 2 1 5 5 H 1.48493 * 109.47383 * 29.99752 * 3 2 1 6 6 H 1.48508 * 109.46991 * 150.00338 * 3 2 1 7 7 C 1.37881 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00395 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99611 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46690 * 180.02562 * 9 7 2 11 11 O 1.21281 * 120.00275 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99815 * 180.02562 * 10 9 7 13 13 C 1.46503 * 119.99965 * 180.02562 * 12 10 9 14 14 C 1.54065 * 108.87405 * 277.96907 * 13 12 10 15 15 C 1.54066 * 112.81762 * 197.50625 * 14 13 12 16 16 C 1.50470 * 112.49875 * 318.28617 * 15 14 13 17 17 C 1.54246 * 108.51998 * 94.14981 * 16 15 14 18 18 C 1.45537 * 112.40731 * 280.01038 * 17 16 15 19 19 C 1.50473 * 108.87630 * 154.99590 * 13 12 10 20 20 H 0.97000 * 120.00375 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47200 * 59.99894 * 9 7 2 22 22 H 1.09000 * 109.46967 * 299.99429 * 9 7 2 23 23 H 0.96996 * 120.00099 * 359.97438 * 12 10 9 24 24 H 1.08996 * 108.77304 * 36.48071 * 13 12 10 25 25 H 1.09005 * 108.81720 * 318.37164 * 14 13 12 26 26 H 1.09004 * 108.81387 * 76.75411 * 14 13 12 27 27 H 1.08997 * 108.87949 * 197.51000 * 15 14 13 28 28 H 1.09001 * 108.87760 * 79.06417 * 15 14 13 29 29 H 1.09003 * 109.63195 * 334.43897 * 16 15 14 30 30 H 1.09001 * 109.62960 * 213.85940 * 16 15 14 31 31 H 1.09001 * 108.89247 * 40.76541 * 17 16 15 32 32 H 1.09004 * 108.89281 * 159.35535 * 17 16 15 33 33 H 1.09000 * 108.89458 * 182.68905 * 18 17 16 34 34 H 1.08998 * 108.89747 * 301.18352 * 18 17 16 35 35 H 1.09006 * 109.62936 * 95.21532 * 19 13 12 36 36 H 1.08998 * 109.78811 * 334.73047 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0018 11 8 3.4227 -3.4229 0.0022 12 7 1.7811 -4.9153 0.0015 13 6 2.7332 -6.0288 0.0033 14 6 3.2129 -6.2767 -1.4396 15 6 3.8635 -7.6611 -1.6234 16 6 4.7657 -8.0301 -0.4772 17 6 3.9546 -8.8632 0.5363 18 6 3.1239 -8.0344 1.3971 19 6 2.0679 -7.2371 0.6045 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5568 0.8903 23 1 0.8275 -5.0926 0.0008 24 1 3.5909 -5.7559 0.6181 25 1 2.3591 -6.1973 -2.1125 26 1 3.9409 -5.5099 -1.7047 27 1 4.4468 -7.6572 -2.5442 28 1 3.0775 -8.4115 -1.7093 29 1 5.1343 -7.1246 0.0049 30 1 5.6051 -8.6190 -0.8468 31 1 3.3152 -9.5575 -0.0090 32 1 4.6453 -9.4335 1.1574 33 1 2.6152 -8.6738 2.1186 34 1 3.7624 -7.3350 1.9367 35 1 1.6571 -7.8617 -0.1889 36 1 1.2676 -6.9228 1.2743 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049811375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:48 Heat of formation + Delta-G solvation = -69.216721 kcal Electronic energy + Delta-G solvation = -15792.178002 eV Core-core repulsion = 13274.918812 eV Total energy + Delta-G solvation = -2517.259190 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.54790 -37.78217 -34.07314 -32.88090 -32.30513 -30.44607 -28.46902 -24.90202 -24.40461 -22.95076 -20.76970 -19.49584 -19.18775 -16.46821 -16.12710 -15.66898 -15.19818 -14.58190 -14.26330 -13.97378 -13.88042 -13.59111 -13.04227 -12.62427 -12.19115 -12.08668 -11.86223 -11.33969 -11.23191 -10.86462 -10.75501 -10.72814 -10.55738 -10.39740 -10.36298 -10.14965 -9.91158 -9.23224 -8.55500 -8.42464 -8.32117 -6.02577 -4.01692 3.36944 3.41980 3.49334 3.78961 3.97075 4.51715 4.58151 4.71168 4.94466 5.16433 5.19345 5.24506 5.35703 5.37225 5.44750 5.60792 5.74304 5.87161 5.96320 6.01605 6.08710 6.12561 6.18998 6.28944 6.32023 6.34042 6.53823 6.61550 7.16654 7.27166 7.37754 7.99511 8.12637 8.51853 9.09427 9.32208 9.63413 11.09932 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.055020 B = 0.005435 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.781566 B = 5150.405850 C = 5308.977430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.075 0.925 9 C 0.004 3.996 10 C 0.514 3.486 11 O -0.547 6.547 12 N -0.748 5.748 13 C 0.147 3.853 14 C -0.128 4.128 15 C -0.113 4.113 16 C -0.122 4.122 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.124 4.124 20 H 0.261 0.739 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.394 0.606 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.318 -17.555 -0.138 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.093 0.907 9 C -0.036 4.036 10 C 0.304 3.696 11 O -0.423 6.423 12 N -0.402 5.402 13 C 0.042 3.958 14 C -0.167 4.167 15 C -0.151 4.151 16 C -0.160 4.160 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.162 4.162 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.227 0.773 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.050 -17.242 -0.127 17.711 hybrid contribution -0.168 0.810 -0.076 0.831 sum 3.882 -16.431 -0.203 16.885 Atomic orbital electron populations 1.69959 1.06041 1.26834 1.51351 1.25010 0.94899 0.99459 0.95297 0.86438 0.79860 0.82703 0.78142 1.20639 1.21291 1.19686 1.21181 0.94252 0.89183 1.49850 0.90729 1.19240 0.94223 0.90764 0.99339 1.21978 0.91047 0.83607 0.73008 1.90519 1.18038 1.84691 1.49049 1.46581 1.09293 1.06022 1.78292 1.20646 0.93110 0.86107 0.95966 1.22324 1.00726 0.96765 0.96917 1.21288 0.98639 0.96970 0.98194 1.21391 0.97835 1.00239 0.96499 1.20497 0.98524 0.98289 0.98057 1.20429 0.97629 0.99103 0.98268 1.21653 0.98277 0.96536 0.99750 0.92963 0.93588 0.93588 0.77273 0.90315 0.92143 0.91549 0.92484 0.92328 0.91235 0.92173 0.92291 0.92523 0.92200 0.91847 0.91311 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.95 8.92 -34.44 -0.31 -15.26 16 8 H 0.07 2.30 6.75 -52.49 -0.35 1.94 16 9 C 0.00 0.09 5.46 -29.03 -0.16 -0.07 16 10 C 0.51 11.89 7.74 -10.99 -0.08 11.80 16 11 O -0.55 -14.45 15.13 5.56 0.08 -14.37 16 12 N -0.75 -13.07 4.95 -54.50 -0.27 -13.34 16 13 C 0.15 2.19 1.94 -68.64 -0.13 2.06 16 14 C -0.13 -1.83 5.37 -25.62 -0.14 -1.97 16 15 C -0.11 -1.25 5.31 -27.44 -0.15 -1.40 16 16 C -0.12 -1.28 5.61 -27.34 -0.15 -1.43 16 17 C -0.12 -1.08 5.26 -29.60 -0.16 -1.24 16 18 C -0.12 -1.19 5.26 -29.60 -0.16 -1.35 16 19 C -0.12 -1.41 5.17 -27.34 -0.14 -1.55 16 20 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 21 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 22 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.39 5.86 8.48 -40.82 -0.35 5.51 16 24 H 0.08 1.36 6.08 -51.93 -0.32 1.04 16 25 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.58 6.63 -51.93 -0.34 0.24 16 29 H 0.07 0.85 6.98 -51.93 -0.36 0.48 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.72 7.47 -51.93 -0.39 0.33 16 35 H 0.07 0.71 6.98 -51.93 -0.36 0.34 16 36 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 LS Contribution 283.84 15.07 4.28 4.28 Total: -1.00 -32.20 283.84 -7.65 -39.85 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.79 Total: 1.16 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.67 Total: -8.93 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.47 Total: -39.39 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.08 Total: -14.37 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.20 -7.65 -39.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049811375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.370 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds