Wall clock time and date at job start Mon Mar 30 2020 03:06:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86800 * 120.00189 * 2 1
4 4 H 1.48492 * 109.47231 * 269.99423 * 3 2 1
5 5 H 1.48499 * 109.47270 * 29.99790 * 3 2 1
6 6 H 1.48502 * 109.46965 * 149.99351 * 3 2 1
7 7 C 1.37879 * 119.99878 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00290 * 180.02562 * 7 2 1
9 9 C 1.50704 * 119.99995 * 0.02562 * 7 2 1
10 10 C 1.52994 * 109.47305 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.47134 * 180.02562 * 10 9 7
12 12 N 1.46901 * 109.47158 * 180.02562 * 11 10 9
13 13 C 1.46830 * 110.98168 * 294.21498 * 12 11 10
14 14 C 1.53038 * 109.51757 * 174.15669 * 13 12 11
15 15 C 1.53127 * 109.27941 * 59.17550 * 14 13 12
16 16 C 1.53117 * 109.15989 * 302.34585 * 15 14 13
17 17 H 1.09001 * 109.50874 * 297.71787 * 16 15 14
18 18 C 1.50701 * 109.53492 * 177.61137 * 16 15 14
19 19 O 1.20760 * 119.99851 * 120.17672 * 18 16 15
20 20 C 1.46847 * 111.00144 * 170.00079 * 12 11 10
21 21 H 0.97001 * 120.00012 * 0.02562 * 1 2 3
22 22 H 1.09002 * 109.46996 * 59.99316 * 9 7 2
23 23 H 1.08998 * 109.47037 * 300.00329 * 9 7 2
24 24 H 1.09002 * 109.47238 * 60.00251 * 10 9 7
25 25 H 1.08998 * 109.47460 * 300.00215 * 10 9 7
26 26 H 1.09001 * 109.47466 * 60.00169 * 11 10 9
27 27 H 1.09002 * 109.47083 * 299.99583 * 11 10 9
28 28 H 1.08995 * 109.46742 * 54.13906 * 13 12 11
29 29 H 1.09004 * 109.45381 * 294.16241 * 13 12 11
30 30 H 1.08997 * 109.50308 * 299.23764 * 14 13 12
31 31 H 1.08996 * 109.53785 * 179.13596 * 14 13 12
32 32 H 1.08997 * 109.52581 * 182.44219 * 15 14 13
33 33 H 1.08998 * 109.57452 * 62.28001 * 15 14 13
34 34 H 1.07997 * 120.00120 * 300.17798 * 18 16 15
35 35 H 1.09002 * 109.46448 * 65.81961 * 20 12 11
36 36 H 1.08994 * 109.45958 * 305.84326 * 20 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0463 -1.4000
5 1 1.4466 2.6527 0.7000
6 1 3.5466 1.4401 0.7002
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 6 1.4800 -4.9871 -0.0001
12 7 2.4345 -6.1037 0.0005
13 6 3.2045 -6.1379 -1.2493
14 6 4.2844 -7.2182 -1.1551
15 6 3.6213 -8.5755 -0.9048
16 6 2.7867 -8.4984 0.3766
17 1 3.4391 -8.2865 1.2237
18 6 2.0832 -9.8124 0.5996
19 8 2.2915 -10.4455 1.6066
20 6 1.7501 -7.3811 0.2380
21 1 -0.4850 0.8401 -0.0004
22 1 0.6245 -2.5571 -0.8896
23 1 0.6239 -2.5567 0.8902
24 1 2.8717 -3.6045 0.8905
25 1 2.8718 -3.6045 -0.8894
26 1 0.8536 -5.0446 -0.8903
27 1 0.8531 -5.0451 0.8897
28 1 3.6742 -5.1681 -1.4132
29 1 2.5369 -6.3633 -2.0809
30 1 4.9604 -6.9862 -0.3321
31 1 4.8463 -7.2542 -2.0884
32 1 4.3891 -9.3411 -0.7939
33 1 2.9751 -8.8268 -1.7458
34 1 1.3928 -10.1878 -0.1412
35 1 1.0894 -7.6005 -0.6008
36 1 1.1637 -7.3139 1.1543
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000054236978.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:30
Heat of formation + Delta-G solvation = -76.946083 kcal
Electronic energy + Delta-G solvation = -15338.531855 eV
Core-core repulsion = 12820.937494 eV
Total energy + Delta-G solvation = -2517.594361 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.77499 -39.36678 -36.35674 -34.77461 -32.57595 -32.22490 -28.47550 -25.92566
-25.32730 -23.57078 -22.48538 -21.27454 -20.83718 -18.49900 -17.29483 -16.86121
-16.44562 -16.30035 -15.96955 -15.62081 -15.26682 -14.77557 -14.58163 -14.32474
-13.95593 -13.54074 -13.51577 -13.04558 -12.65817 -12.51883 -12.41352 -12.27905
-11.93182 -11.61794 -11.52101 -11.36660 -11.27142 -11.06732 -10.54777 -10.44426
-9.23625 -8.19849 -6.30705 0.98501 1.40385 1.41784 1.53088 2.41314
2.87924 3.13424 3.44815 3.79722 3.83694 3.99434 4.14185 4.24914
4.34824 4.47217 4.52771 4.62349 4.71979 4.77805 4.79479 4.91932
4.98010 5.03199 5.11572 5.16801 5.18318 5.31968 5.43548 5.53100
5.75413 5.86621 6.10556 6.23265 6.28713 6.42084 6.86140 7.38584
8.92086
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.055466 B = 0.004510 C = 0.004311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 504.688916 B = 6207.387037 C = 6494.158629
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C 0.000 4.000
3 Si 0.965 3.035
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.264 1.264
7 C -0.543 4.543
8 H 0.058 0.942
9 C 0.025 3.975
10 C -0.089 4.089
11 C 0.069 3.931
12 N -0.550 5.550
13 C 0.047 3.953
14 C -0.110 4.110
15 C -0.103 4.103
16 C -0.151 4.151
17 H 0.077 0.923
18 C 0.367 3.633
19 O -0.506 6.506
20 C 0.066 3.934
21 H 0.264 0.736
22 H -0.008 1.008
23 H -0.009 1.009
24 H 0.047 0.953
25 H 0.052 0.948
26 H 0.030 0.970
27 H 0.065 0.935
28 H 0.066 0.934
29 H 0.040 0.960
30 H 0.059 0.941
31 H 0.089 0.911
32 H 0.078 0.922
33 H 0.088 0.912
34 H 0.140 0.860
35 H 0.057 0.943
36 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.502 -17.709 -4.588 19.104
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.198 4.198
3 Si 0.789 3.211
4 H -0.196 1.196
5 H -0.207 1.207
6 H -0.189 1.189
7 C -0.581 4.581
8 H 0.076 0.924
9 C -0.012 4.012
10 C -0.127 4.127
11 C -0.059 4.059
12 N -0.275 5.275
13 C -0.081 4.081
14 C -0.148 4.148
15 C -0.141 4.141
16 C -0.171 4.171
17 H 0.096 0.904
18 C 0.225 3.775
19 O -0.379 6.379
20 C -0.062 4.062
21 H 0.072 0.928
22 H 0.011 0.989
23 H 0.009 0.991
24 H 0.066 0.934
25 H 0.070 0.930
26 H 0.049 0.951
27 H 0.084 0.916
28 H 0.084 0.916
29 H 0.058 0.942
30 H 0.078 0.922
31 H 0.107 0.893
32 H 0.097 0.903
33 H 0.107 0.893
34 H 0.156 0.844
35 H 0.075 0.925
36 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 5.801 -17.875 -3.656 19.145
hybrid contribution -0.498 1.232 -0.460 1.406
sum 5.304 -16.642 -4.116 17.945
Atomic orbital electron populations
1.70092 1.07782 1.27764 1.51760 1.25971 0.95767 1.03325 0.94708
0.85455 0.78648 0.78449 0.78556 1.19618 1.20710 1.18874 1.21692
0.93485 0.92453 1.50465 0.92386 1.18977 0.94421 0.93079 0.94767
1.21397 0.97960 0.92829 1.00547 1.21989 0.93471 0.90248 1.00153
1.61843 1.26469 1.02866 1.36283 1.22230 0.96086 1.00192 0.89568
1.21547 0.97064 0.93452 1.02751 1.21483 0.99224 0.97804 0.95539
1.22144 0.98700 0.94777 1.01469 0.90408 1.26496 0.79667 0.84716
0.86592 1.90408 1.58169 1.58382 1.30928 1.21915 0.94732 0.88007
1.01555 0.92763 0.98945 0.99085 0.93403 0.92956 0.95137 0.91613
0.91551 0.94164 0.92197 0.89283 0.90289 0.89298 0.84394 0.92463
0.91195
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16
2 C 0.00 -0.01 5.46 84.66 0.46 0.46 16
3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16
4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16
5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16
6 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16
7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16
8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16
9 C 0.03 1.34 4.97 29.85 0.15 1.49 16
10 C -0.09 -3.74 5.08 30.59 0.16 -3.58 16
11 C 0.07 2.34 4.96 86.30 0.43 2.77 16
12 N -0.55 -15.25 4.66 -896.39 -4.17 -19.43 16
13 C 0.05 1.12 5.29 86.33 0.46 1.58 16
14 C -0.11 -1.98 6.09 30.65 0.19 -1.79 16
15 C -0.10 -1.44 5.27 30.68 0.16 -1.28 16
16 C -0.15 -2.71 2.77 -11.49 -0.03 -2.74 16
17 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16
18 C 0.37 5.89 10.45 71.24 0.74 6.63 16
19 O -0.51 -12.88 17.90 -1.45 -0.03 -12.91 16
20 C 0.07 1.40 4.73 86.33 0.41 1.81 16
21 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16
22 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16
23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16
24 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16
25 H 0.05 2.12 6.43 -2.39 -0.02 2.10 16
26 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16
27 H 0.07 2.27 7.99 -2.39 -0.02 2.25 16
28 H 0.07 1.83 6.21 -2.39 -0.01 1.82 16
29 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16
30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16
31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16
32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16
34 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16
35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
36 H 0.07 1.57 8.01 -2.39 -0.02 1.56 16
Total: -1.00 -69.08 293.15 2.49 -66.59
By element:
Atomic # 1 Polarization: 0.86 SS G_CDS: 1.02 Total: 1.88 kcal
Atomic # 6 Polarization: -29.16 SS G_CDS: 3.35 Total: -25.81 kcal
Atomic # 7 Polarization: -72.45 SS G_CDS: -3.89 Total: -76.34 kcal
Atomic # 8 Polarization: -12.88 SS G_CDS: -0.03 Total: -12.91 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal
Total: -69.08 2.49 -66.59 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054236978.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.352 kcal
(2) G-P(sol) polarization free energy of solvation -69.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.432 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds