Wall clock time and date at job start Mon Mar 30 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00189 * 2 1 4 4 H 1.48492 * 109.47231 * 269.99423 * 3 2 1 5 5 H 1.48499 * 109.47270 * 29.99790 * 3 2 1 6 6 H 1.48502 * 109.46965 * 149.99351 * 3 2 1 7 7 C 1.37879 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00290 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99995 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47134 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47158 * 180.02562 * 11 10 9 13 13 C 1.46830 * 110.98168 * 294.21498 * 12 11 10 14 14 C 1.53038 * 109.51757 * 174.15669 * 13 12 11 15 15 C 1.53127 * 109.27941 * 59.17550 * 14 13 12 16 16 C 1.53117 * 109.15989 * 302.34585 * 15 14 13 17 17 H 1.09001 * 109.50874 * 297.71787 * 16 15 14 18 18 C 1.50701 * 109.53492 * 177.61137 * 16 15 14 19 19 O 1.20760 * 119.99851 * 120.17672 * 18 16 15 20 20 C 1.46847 * 111.00144 * 170.00079 * 12 11 10 21 21 H 0.97001 * 120.00012 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46996 * 59.99316 * 9 7 2 23 23 H 1.08998 * 109.47037 * 300.00329 * 9 7 2 24 24 H 1.09002 * 109.47238 * 60.00251 * 10 9 7 25 25 H 1.08998 * 109.47460 * 300.00215 * 10 9 7 26 26 H 1.09001 * 109.47466 * 60.00169 * 11 10 9 27 27 H 1.09002 * 109.47083 * 299.99583 * 11 10 9 28 28 H 1.08995 * 109.46742 * 54.13906 * 13 12 11 29 29 H 1.09004 * 109.45381 * 294.16241 * 13 12 11 30 30 H 1.08997 * 109.50308 * 299.23764 * 14 13 12 31 31 H 1.08996 * 109.53785 * 179.13596 * 14 13 12 32 32 H 1.08997 * 109.52581 * 182.44219 * 15 14 13 33 33 H 1.08998 * 109.57452 * 62.28001 * 15 14 13 34 34 H 1.07997 * 120.00120 * 300.17798 * 18 16 15 35 35 H 1.09002 * 109.46448 * 65.81961 * 20 12 11 36 36 H 1.08994 * 109.45958 * 305.84326 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4345 -6.1037 0.0005 13 6 3.2045 -6.1379 -1.2493 14 6 4.2844 -7.2182 -1.1551 15 6 3.6213 -8.5755 -0.9048 16 6 2.7867 -8.4984 0.3766 17 1 3.4391 -8.2865 1.2237 18 6 2.0832 -9.8124 0.5996 19 8 2.2915 -10.4455 1.6066 20 6 1.7501 -7.3811 0.2380 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8896 23 1 0.6239 -2.5567 0.8902 24 1 2.8717 -3.6045 0.8905 25 1 2.8718 -3.6045 -0.8894 26 1 0.8536 -5.0446 -0.8903 27 1 0.8531 -5.0451 0.8897 28 1 3.6742 -5.1681 -1.4132 29 1 2.5369 -6.3633 -2.0809 30 1 4.9604 -6.9862 -0.3321 31 1 4.8463 -7.2542 -2.0884 32 1 4.3891 -9.3411 -0.7939 33 1 2.9751 -8.8268 -1.7458 34 1 1.3928 -10.1878 -0.1412 35 1 1.0894 -7.6005 -0.6008 36 1 1.1637 -7.3139 1.1543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054236978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:30 Heat of formation + Delta-G solvation = -76.946083 kcal Electronic energy + Delta-G solvation = -15338.531855 eV Core-core repulsion = 12820.937494 eV Total energy + Delta-G solvation = -2517.594361 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77499 -39.36678 -36.35674 -34.77461 -32.57595 -32.22490 -28.47550 -25.92566 -25.32730 -23.57078 -22.48538 -21.27454 -20.83718 -18.49900 -17.29483 -16.86121 -16.44562 -16.30035 -15.96955 -15.62081 -15.26682 -14.77557 -14.58163 -14.32474 -13.95593 -13.54074 -13.51577 -13.04558 -12.65817 -12.51883 -12.41352 -12.27905 -11.93182 -11.61794 -11.52101 -11.36660 -11.27142 -11.06732 -10.54777 -10.44426 -9.23625 -8.19849 -6.30705 0.98501 1.40385 1.41784 1.53088 2.41314 2.87924 3.13424 3.44815 3.79722 3.83694 3.99434 4.14185 4.24914 4.34824 4.47217 4.52771 4.62349 4.71979 4.77805 4.79479 4.91932 4.98010 5.03199 5.11572 5.16801 5.18318 5.31968 5.43548 5.53100 5.75413 5.86621 6.10556 6.23265 6.28713 6.42084 6.86140 7.38584 8.92086 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.055466 B = 0.004510 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.688916 B = 6207.387037 C = 6494.158629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.089 4.089 11 C 0.069 3.931 12 N -0.550 5.550 13 C 0.047 3.953 14 C -0.110 4.110 15 C -0.103 4.103 16 C -0.151 4.151 17 H 0.077 0.923 18 C 0.367 3.633 19 O -0.506 6.506 20 C 0.066 3.934 21 H 0.264 0.736 22 H -0.008 1.008 23 H -0.009 1.009 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.057 0.943 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.502 -17.709 -4.588 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.127 4.127 11 C -0.059 4.059 12 N -0.275 5.275 13 C -0.081 4.081 14 C -0.148 4.148 15 C -0.141 4.141 16 C -0.171 4.171 17 H 0.096 0.904 18 C 0.225 3.775 19 O -0.379 6.379 20 C -0.062 4.062 21 H 0.072 0.928 22 H 0.011 0.989 23 H 0.009 0.991 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.801 -17.875 -3.656 19.145 hybrid contribution -0.498 1.232 -0.460 1.406 sum 5.304 -16.642 -4.116 17.945 Atomic orbital electron populations 1.70092 1.07782 1.27764 1.51760 1.25971 0.95767 1.03325 0.94708 0.85455 0.78648 0.78449 0.78556 1.19618 1.20710 1.18874 1.21692 0.93485 0.92453 1.50465 0.92386 1.18977 0.94421 0.93079 0.94767 1.21397 0.97960 0.92829 1.00547 1.21989 0.93471 0.90248 1.00153 1.61843 1.26469 1.02866 1.36283 1.22230 0.96086 1.00192 0.89568 1.21547 0.97064 0.93452 1.02751 1.21483 0.99224 0.97804 0.95539 1.22144 0.98700 0.94777 1.01469 0.90408 1.26496 0.79667 0.84716 0.86592 1.90408 1.58169 1.58382 1.30928 1.21915 0.94732 0.88007 1.01555 0.92763 0.98945 0.99085 0.93403 0.92956 0.95137 0.91613 0.91551 0.94164 0.92197 0.89283 0.90289 0.89298 0.84394 0.92463 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.74 5.08 30.59 0.16 -3.58 16 11 C 0.07 2.34 4.96 86.30 0.43 2.77 16 12 N -0.55 -15.25 4.66 -896.39 -4.17 -19.43 16 13 C 0.05 1.12 5.29 86.33 0.46 1.58 16 14 C -0.11 -1.98 6.09 30.65 0.19 -1.79 16 15 C -0.10 -1.44 5.27 30.68 0.16 -1.28 16 16 C -0.15 -2.71 2.77 -11.49 -0.03 -2.74 16 17 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 18 C 0.37 5.89 10.45 71.24 0.74 6.63 16 19 O -0.51 -12.88 17.90 -1.45 -0.03 -12.91 16 20 C 0.07 1.40 4.73 86.33 0.41 1.81 16 21 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 22 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 25 H 0.05 2.12 6.43 -2.39 -0.02 2.10 16 26 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 27 H 0.07 2.27 7.99 -2.39 -0.02 2.25 16 28 H 0.07 1.83 6.21 -2.39 -0.01 1.82 16 29 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.57 8.01 -2.39 -0.02 1.56 16 Total: -1.00 -69.08 293.15 2.49 -66.59 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 1.02 Total: 1.88 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 3.35 Total: -25.81 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -3.89 Total: -76.34 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.03 Total: -12.91 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -69.08 2.49 -66.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054236978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.352 kcal (2) G-P(sol) polarization free energy of solvation -69.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds