Wall clock time and date at job start Mon Mar 30 2020 03:06:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86799 * 120.00118 * 2 1
4 4 H 1.48500 * 109.46921 * 270.00027 * 3 2 1
5 5 H 1.48500 * 109.47163 * 29.99695 * 3 2 1
6 6 H 1.48494 * 109.47628 * 149.99891 * 3 2 1
7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1
9 9 C 1.50699 * 119.99798 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.47239 * 179.97438 * 9 7 2
11 11 C 1.52993 * 109.47473 * 179.97438 * 10 9 7
12 12 N 1.46906 * 109.47378 * 179.97438 * 11 10 9
13 13 C 1.46843 * 110.99752 * 66.04836 * 12 11 10
14 14 C 1.53037 * 109.52380 * 185.83754 * 13 12 11
15 15 C 1.53120 * 109.28005 * 300.82188 * 14 13 12
16 16 C 1.53123 * 109.15662 * 57.65176 * 15 14 13
17 17 H 1.08995 * 109.50687 * 62.29115 * 16 15 14
18 18 C 1.50700 * 109.49905 * 182.36497 * 16 15 14
19 19 O 1.20758 * 120.00142 * 240.00207 * 18 16 15
20 20 C 1.46851 * 110.99829 * 190.25764 * 12 11 10
21 21 H 0.97001 * 120.00663 * 0.02562 * 1 2 3
22 22 H 1.08996 * 109.47585 * 59.99116 * 9 7 2
23 23 H 1.09000 * 109.46916 * 299.99278 * 9 7 2
24 24 H 1.09004 * 109.47108 * 59.99559 * 10 9 7
25 25 H 1.09004 * 109.47368 * 299.99660 * 10 9 7
26 26 H 1.09004 * 109.46862 * 59.99962 * 11 10 9
27 27 H 1.09000 * 109.47250 * 299.99985 * 11 10 9
28 28 H 1.09002 * 109.46627 * 305.85583 * 13 12 11
29 29 H 1.09000 * 109.46524 * 65.82718 * 13 12 11
30 30 H 1.09005 * 109.50037 * 60.76071 * 14 13 12
31 31 H 1.09000 * 109.50287 * 180.83957 * 14 13 12
32 32 H 1.08994 * 109.52195 * 177.55396 * 15 14 13
33 33 H 1.09001 * 109.52346 * 297.74567 * 15 14 13
34 34 H 1.08005 * 120.00264 * 60.00281 * 18 16 15
35 35 H 1.08998 * 109.46520 * 294.17463 * 20 12 11
36 36 H 1.08993 * 109.46107 * 54.14758 * 20 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5466 1.4403 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0846 -1.1941 0.0001
9 6 1.2511 -2.4992 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4804 -4.9871 0.0012
12 7 2.4350 -6.1037 0.0006
13 6 3.2009 -6.1418 1.2529
14 6 4.2810 -7.2219 1.1591
15 6 3.6187 -8.5784 0.9025
16 6 2.7883 -8.4973 -0.3815
17 1 3.4436 -8.2829 -1.2257
18 6 2.0863 -9.8110 -0.6104
19 8 2.3006 -10.4427 -1.6170
20 6 1.7514 -7.3803 -0.2430
21 1 -0.4851 0.8400 -0.0004
22 1 0.6246 -2.5571 -0.8895
23 1 0.6242 -2.5567 0.8904
24 1 2.8720 -3.6043 0.8905
25 1 2.8719 -3.6044 -0.8895
26 1 0.8534 -5.0450 -0.8886
27 1 0.8540 -5.0446 0.8914
28 1 3.6702 -5.1726 1.4214
29 1 2.5306 -6.3697 2.0817
30 1 4.9598 -6.9875 0.3390
31 1 4.8396 -7.2601 2.0943
32 1 4.3868 -9.3437 0.7918
33 1 2.9695 -8.8312 1.7408
34 1 1.3915 -10.1875 0.1258
35 1 1.0879 -7.6023 0.5928
36 1 1.1680 -7.3105 -1.1610
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000054236979.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:32
Heat of formation + Delta-G solvation = -56.586746 kcal
Electronic energy + Delta-G solvation = -15337.086289 eV
Core-core repulsion = 12820.374775 eV
Total energy + Delta-G solvation = -2516.711514 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.88319 -38.36961 -34.84393 -33.02463 -31.35318 -30.85754 -26.73881 -24.92782
-23.92295 -22.32240 -21.25011 -20.01853 -19.75955 -16.62350 -16.17621 -15.77119
-15.14641 -15.01249 -14.69257 -14.42109 -14.15252 -13.55590 -13.46549 -13.06938
-12.60812 -12.23256 -11.75585 -11.55388 -11.33880 -11.03128 -10.93595 -10.76336
-10.61554 -10.49920 -10.42003 -9.75528 -9.55420 -9.31382 -9.04336 -8.33449
-8.12106 -5.98815 -4.00828 1.72855 3.33069 3.39134 3.42568 3.85260
4.24135 4.47623 4.60534 4.66556 4.78677 5.03247 5.24122 5.33879
5.37137 5.44584 5.53542 5.56841 5.65801 5.76955 5.79943 5.96182
6.02223 6.09492 6.24005 6.30414 6.69768 6.75833 7.11116 7.13619
7.32197 7.36198 7.69317 7.84031 8.01567 8.44955 9.06390 9.63205
11.12674
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.055418 B = 0.004509 C = 0.004311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 505.130476 B = 6208.634440 C = 6494.148889
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.056 3.944
3 Si 0.892 3.108
4 H -0.280 1.280
5 H -0.287 1.287
6 H -0.274 1.274
7 C -0.518 4.518
8 H 0.055 0.945
9 C 0.021 3.979
10 C -0.105 4.105
11 C 0.057 3.943
12 N -0.537 5.537
13 C 0.050 3.950
14 C -0.115 4.115
15 C -0.108 4.108
16 C -0.155 4.155
17 H 0.101 0.899
18 C 0.353 3.647
19 O -0.462 6.462
20 C 0.067 3.933
21 H 0.260 0.740
22 H 0.015 0.985
23 H 0.013 0.987
24 H 0.047 0.953
25 H 0.056 0.944
26 H 0.070 0.930
27 H 0.030 0.970
28 H 0.086 0.914
29 H 0.031 0.969
30 H 0.073 0.927
31 H 0.069 0.931
32 H 0.065 0.935
33 H 0.066 0.934
34 H 0.093 0.907
35 H 0.037 0.963
36 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.673 -16.819 3.498 17.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.145 4.145
3 Si 0.720 3.280
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.199 1.199
7 C -0.557 4.557
8 H 0.073 0.927
9 C -0.016 4.016
10 C -0.143 4.143
11 C -0.070 4.070
12 N -0.262 5.262
13 C -0.078 4.078
14 C -0.153 4.153
15 C -0.146 4.146
16 C -0.174 4.174
17 H 0.119 0.881
18 C 0.208 3.792
19 O -0.332 6.332
20 C -0.061 4.061
21 H 0.070 0.930
22 H 0.034 0.966
23 H 0.032 0.968
24 H 0.066 0.934
25 H 0.074 0.926
26 H 0.088 0.912
27 H 0.048 0.952
28 H 0.104 0.896
29 H 0.049 0.951
30 H 0.091 0.909
31 H 0.087 0.913
32 H 0.084 0.916
33 H 0.084 0.916
34 H 0.109 0.891
35 H 0.055 0.945
36 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 4.966 -16.968 2.565 17.865
hybrid contribution -0.230 0.951 0.758 1.237
sum 4.736 -16.017 3.323 17.030
Atomic orbital electron populations
1.69961 1.06071 1.26558 1.51048 1.25024 0.94834 0.99249 0.95378
0.86600 0.79839 0.83486 0.78117 1.20657 1.21270 1.19881 1.21251
0.93047 0.91038 1.50329 0.92680 1.19077 0.94045 0.91421 0.97088
1.21660 0.99163 0.92619 1.00819 1.22298 0.93599 0.90795 1.00305
1.61939 1.26988 1.02457 1.34807 1.22171 0.95529 1.00046 0.90051
1.21573 0.97994 0.93548 1.02169 1.21480 0.98838 0.98505 0.95746
1.22192 0.99186 0.94719 1.01342 0.88062 1.26058 0.80469 0.85900
0.86759 1.90400 1.56772 1.57330 1.28702 1.21869 0.94167 0.89033
1.01079 0.93043 0.96615 0.96825 0.93409 0.92558 0.91153 0.95203
0.89611 0.95069 0.90876 0.91279 0.91619 0.91557 0.89084 0.94492
0.90520
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16
2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16
4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16
8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16
9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16
10 C -0.10 -2.15 5.09 -26.74 -0.14 -2.29 16
11 C 0.06 0.96 4.96 -3.82 -0.02 0.94 16
12 N -0.54 -7.68 4.66 -234.67 -1.09 -8.77 16
13 C 0.05 0.63 5.29 -3.84 -0.02 0.61 16
14 C -0.12 -1.16 6.09 -26.65 -0.16 -1.32 16
15 C -0.11 -0.93 5.27 -26.61 -0.14 -1.07 16
16 C -0.15 -1.55 2.77 -91.69 -0.25 -1.80 16
17 H 0.10 1.18 8.12 -51.93 -0.42 0.76 16
18 C 0.35 3.30 10.45 36.01 0.38 3.68 16
19 O -0.46 -6.18 17.90 6.00 0.11 -6.08 16
20 C 0.07 0.77 4.73 -3.83 -0.02 0.75 16
21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16
24 H 0.05 0.96 6.44 -51.93 -0.33 0.62 16
25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16
26 H 0.07 1.19 7.98 -51.93 -0.41 0.78 16
27 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16
28 H 0.09 1.21 6.22 -51.93 -0.32 0.88 16
29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16
30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
34 H 0.09 0.55 8.06 -52.48 -0.42 0.13 16
35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16
36 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16
LS Contribution 293.17 15.07 4.42 4.42
Total: -1.00 -31.51 293.17 -7.88 -39.39
By element:
Atomic # 1 Polarization: 0.37 SS G_CDS: -6.10 Total: -5.73 kcal
Atomic # 6 Polarization: -12.70 SS G_CDS: -0.92 Total: -13.62 kcal
Atomic # 7 Polarization: -34.73 SS G_CDS: -0.36 Total: -35.09 kcal
Atomic # 8 Polarization: -6.18 SS G_CDS: 0.11 Total: -6.08 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal
Total LS contribution 4.42 Total: 4.42 kcal
Total: -31.51 -7.88 -39.39 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054236979.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.197 kcal
(2) G-P(sol) polarization free energy of solvation -31.515 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.711 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.587 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds