Wall clock time and date at job start Mon Mar 30 2020 03:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00118 * 2 1 4 4 H 1.48500 * 109.46921 * 270.00027 * 3 2 1 5 5 H 1.48500 * 109.47163 * 29.99695 * 3 2 1 6 6 H 1.48494 * 109.47628 * 149.99891 * 3 2 1 7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47378 * 179.97438 * 11 10 9 13 13 C 1.46843 * 110.99752 * 66.04836 * 12 11 10 14 14 C 1.53037 * 109.52380 * 185.83754 * 13 12 11 15 15 C 1.53120 * 109.28005 * 300.82188 * 14 13 12 16 16 C 1.53123 * 109.15662 * 57.65176 * 15 14 13 17 17 H 1.08995 * 109.50687 * 62.29115 * 16 15 14 18 18 C 1.50700 * 109.49905 * 182.36497 * 16 15 14 19 19 O 1.20758 * 120.00142 * 240.00207 * 18 16 15 20 20 C 1.46851 * 110.99829 * 190.25764 * 12 11 10 21 21 H 0.97001 * 120.00663 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47585 * 59.99116 * 9 7 2 23 23 H 1.09000 * 109.46916 * 299.99278 * 9 7 2 24 24 H 1.09004 * 109.47108 * 59.99559 * 10 9 7 25 25 H 1.09004 * 109.47368 * 299.99660 * 10 9 7 26 26 H 1.09004 * 109.46862 * 59.99962 * 11 10 9 27 27 H 1.09000 * 109.47250 * 299.99985 * 11 10 9 28 28 H 1.09002 * 109.46627 * 305.85583 * 13 12 11 29 29 H 1.09000 * 109.46524 * 65.82718 * 13 12 11 30 30 H 1.09005 * 109.50037 * 60.76071 * 14 13 12 31 31 H 1.09000 * 109.50287 * 180.83957 * 14 13 12 32 32 H 1.08994 * 109.52195 * 177.55396 * 15 14 13 33 33 H 1.09001 * 109.52346 * 297.74567 * 15 14 13 34 34 H 1.08005 * 120.00264 * 60.00281 * 18 16 15 35 35 H 1.08998 * 109.46520 * 294.17463 * 20 12 11 36 36 H 1.08993 * 109.46107 * 54.14758 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1037 0.0006 13 6 3.2009 -6.1418 1.2529 14 6 4.2810 -7.2219 1.1591 15 6 3.6187 -8.5784 0.9025 16 6 2.7883 -8.4973 -0.3815 17 1 3.4436 -8.2829 -1.2257 18 6 2.0863 -9.8110 -0.6104 19 8 2.3006 -10.4427 -1.6170 20 6 1.7514 -7.3803 -0.2430 21 1 -0.4851 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8895 23 1 0.6242 -2.5567 0.8904 24 1 2.8720 -3.6043 0.8905 25 1 2.8719 -3.6044 -0.8895 26 1 0.8534 -5.0450 -0.8886 27 1 0.8540 -5.0446 0.8914 28 1 3.6702 -5.1726 1.4214 29 1 2.5306 -6.3697 2.0817 30 1 4.9598 -6.9875 0.3390 31 1 4.8396 -7.2601 2.0943 32 1 4.3868 -9.3437 0.7918 33 1 2.9695 -8.8312 1.7408 34 1 1.3915 -10.1875 0.1258 35 1 1.0879 -7.6023 0.5928 36 1 1.1680 -7.3105 -1.1610 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054236979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:32 Heat of formation + Delta-G solvation = -76.982023 kcal Electronic energy + Delta-G solvation = -15337.970694 eV Core-core repulsion = 12820.374775 eV Total energy + Delta-G solvation = -2517.595919 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.77453 -39.36559 -36.35674 -34.77434 -32.57625 -32.22534 -28.47607 -25.92370 -25.32740 -23.57075 -22.48302 -21.27627 -20.83732 -18.49895 -17.29425 -16.86107 -16.44591 -16.30015 -15.96962 -15.61819 -15.26716 -14.77532 -14.58386 -14.32381 -13.95556 -13.54061 -13.51617 -13.05229 -12.65235 -12.51015 -12.40362 -12.29721 -11.93344 -11.61892 -11.52034 -11.35654 -11.27766 -11.06828 -10.54906 -10.44390 -9.23622 -8.19829 -6.30695 0.98541 1.40475 1.41803 1.52941 2.41304 2.87859 3.13430 3.44824 3.79717 3.83720 3.99414 4.14148 4.24915 4.34838 4.47249 4.52820 4.62396 4.72037 4.77855 4.79392 4.91966 4.97965 5.03189 5.11553 5.16766 5.18351 5.31954 5.43495 5.53083 5.75443 5.86614 6.10564 6.23234 6.28729 6.42105 6.86146 7.38577 8.92099 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.055418 B = 0.004509 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.130476 B = 6208.634440 C = 6494.148889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.089 4.089 11 C 0.069 3.931 12 N -0.550 5.550 13 C 0.047 3.953 14 C -0.110 4.110 15 C -0.103 4.103 16 C -0.151 4.151 17 H 0.077 0.923 18 C 0.367 3.633 19 O -0.506 6.506 20 C 0.066 3.934 21 H 0.264 0.736 22 H -0.009 1.009 23 H -0.008 1.008 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.057 0.943 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.481 -17.724 4.564 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.127 4.127 11 C -0.059 4.059 12 N -0.275 5.275 13 C -0.081 4.081 14 C -0.148 4.148 15 C -0.140 4.140 16 C -0.171 4.171 17 H 0.096 0.904 18 C 0.225 3.775 19 O -0.379 6.379 20 C -0.062 4.062 21 H 0.072 0.928 22 H 0.009 0.991 23 H 0.011 0.989 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.785 -17.887 3.642 19.149 hybrid contribution -0.499 1.233 0.440 1.401 sum 5.286 -16.655 4.082 17.944 Atomic orbital electron populations 1.70088 1.07782 1.27771 1.51757 1.25970 0.95765 1.03323 0.94708 0.85456 0.78708 0.78463 0.78487 1.19862 1.20621 1.18722 1.21692 0.93486 0.92452 1.50466 0.92383 1.18976 0.94421 0.93079 0.94766 1.21395 0.97959 0.92831 1.00542 1.21989 0.93464 0.90250 1.00158 1.61848 1.26658 1.02904 1.36050 1.22232 0.96122 1.00181 0.89539 1.21549 0.97066 0.93462 1.02742 1.21483 0.99260 0.97806 0.95498 1.22141 0.98719 0.94783 1.01446 0.90409 1.26497 0.79792 0.84718 0.86464 1.90408 1.58270 1.58444 1.30765 1.21913 0.94731 0.88017 1.01547 0.92760 0.99101 0.98928 0.92986 0.93388 0.91607 0.95134 0.91568 0.94158 0.92199 0.89286 0.90285 0.89297 0.84396 0.92461 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.38 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.74 5.09 30.59 0.16 -3.58 16 11 C 0.07 2.34 4.96 86.30 0.43 2.77 16 12 N -0.55 -15.25 4.66 -896.37 -4.17 -19.42 16 13 C 0.05 1.12 5.29 86.33 0.46 1.58 16 14 C -0.11 -1.98 6.09 30.65 0.19 -1.80 16 15 C -0.10 -1.44 5.27 30.68 0.16 -1.28 16 16 C -0.15 -2.71 2.77 -11.49 -0.03 -2.74 16 17 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 18 C 0.37 5.88 10.45 71.24 0.74 6.63 16 19 O -0.51 -12.88 17.90 -1.45 -0.03 -12.91 16 20 C 0.07 1.40 4.73 86.32 0.41 1.81 16 21 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 22 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 23 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 24 H 0.05 2.11 6.44 -2.38 -0.02 2.10 16 25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.07 2.27 7.98 -2.38 -0.02 2.25 16 27 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 28 H 0.07 1.83 6.22 -2.39 -0.01 1.81 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.57 8.01 -2.39 -0.02 1.56 16 Total: -1.00 -69.07 293.17 2.49 -66.59 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: 1.02 Total: 1.87 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 3.35 Total: -25.81 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -3.89 Total: -76.34 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.03 Total: -12.91 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -69.07 2.49 -66.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054236979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.397 kcal (2) G-P(sol) polarization free energy of solvation -69.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds