Wall clock time and date at job start Mon Mar 30 2020 03:06:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86799 * 120.00118 * 2 1
4 4 H 1.48500 * 109.46921 * 270.00027 * 3 2 1
5 5 H 1.48500 * 109.47163 * 29.99695 * 3 2 1
6 6 H 1.48494 * 109.47628 * 149.99891 * 3 2 1
7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1
9 9 C 1.50699 * 119.99798 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.47239 * 179.97438 * 9 7 2
11 11 C 1.52993 * 109.47473 * 179.97438 * 10 9 7
12 12 N 1.46906 * 109.47378 * 179.97438 * 11 10 9
13 13 C 1.46843 * 110.99752 * 66.04836 * 12 11 10
14 14 C 1.53037 * 109.52380 * 185.83754 * 13 12 11
15 15 C 1.53120 * 109.28005 * 300.82188 * 14 13 12
16 16 C 1.53123 * 109.15662 * 57.65176 * 15 14 13
17 17 H 1.08995 * 109.50687 * 62.29115 * 16 15 14
18 18 C 1.50700 * 109.49905 * 182.36497 * 16 15 14
19 19 O 1.20758 * 120.00142 * 240.00207 * 18 16 15
20 20 C 1.46851 * 110.99829 * 190.25764 * 12 11 10
21 21 H 0.97001 * 120.00663 * 0.02562 * 1 2 3
22 22 H 1.08996 * 109.47585 * 59.99116 * 9 7 2
23 23 H 1.09000 * 109.46916 * 299.99278 * 9 7 2
24 24 H 1.09004 * 109.47108 * 59.99559 * 10 9 7
25 25 H 1.09004 * 109.47368 * 299.99660 * 10 9 7
26 26 H 1.09004 * 109.46862 * 59.99962 * 11 10 9
27 27 H 1.09000 * 109.47250 * 299.99985 * 11 10 9
28 28 H 1.09002 * 109.46627 * 305.85583 * 13 12 11
29 29 H 1.09000 * 109.46524 * 65.82718 * 13 12 11
30 30 H 1.09005 * 109.50037 * 60.76071 * 14 13 12
31 31 H 1.09000 * 109.50287 * 180.83957 * 14 13 12
32 32 H 1.08994 * 109.52195 * 177.55396 * 15 14 13
33 33 H 1.09001 * 109.52346 * 297.74567 * 15 14 13
34 34 H 1.08005 * 120.00264 * 60.00281 * 18 16 15
35 35 H 1.08998 * 109.46520 * 294.17463 * 20 12 11
36 36 H 1.08993 * 109.46107 * 54.14758 * 20 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5466 1.4403 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0846 -1.1941 0.0001
9 6 1.2511 -2.4992 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4804 -4.9871 0.0012
12 7 2.4350 -6.1037 0.0006
13 6 3.2009 -6.1418 1.2529
14 6 4.2810 -7.2219 1.1591
15 6 3.6187 -8.5784 0.9025
16 6 2.7883 -8.4973 -0.3815
17 1 3.4436 -8.2829 -1.2257
18 6 2.0863 -9.8110 -0.6104
19 8 2.3006 -10.4427 -1.6170
20 6 1.7514 -7.3803 -0.2430
21 1 -0.4851 0.8400 -0.0004
22 1 0.6246 -2.5571 -0.8895
23 1 0.6242 -2.5567 0.8904
24 1 2.8720 -3.6043 0.8905
25 1 2.8719 -3.6044 -0.8895
26 1 0.8534 -5.0450 -0.8886
27 1 0.8540 -5.0446 0.8914
28 1 3.6702 -5.1726 1.4214
29 1 2.5306 -6.3697 2.0817
30 1 4.9598 -6.9875 0.3390
31 1 4.8396 -7.2601 2.0943
32 1 4.3868 -9.3437 0.7918
33 1 2.9695 -8.8312 1.7408
34 1 1.3915 -10.1875 0.1258
35 1 1.0879 -7.6023 0.5928
36 1 1.1680 -7.3105 -1.1610
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000054236979.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:32
Heat of formation + Delta-G solvation = -76.982023 kcal
Electronic energy + Delta-G solvation = -15337.970694 eV
Core-core repulsion = 12820.374775 eV
Total energy + Delta-G solvation = -2517.595919 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.77453 -39.36559 -36.35674 -34.77434 -32.57625 -32.22534 -28.47607 -25.92370
-25.32740 -23.57075 -22.48302 -21.27627 -20.83732 -18.49895 -17.29425 -16.86107
-16.44591 -16.30015 -15.96962 -15.61819 -15.26716 -14.77532 -14.58386 -14.32381
-13.95556 -13.54061 -13.51617 -13.05229 -12.65235 -12.51015 -12.40362 -12.29721
-11.93344 -11.61892 -11.52034 -11.35654 -11.27766 -11.06828 -10.54906 -10.44390
-9.23622 -8.19829 -6.30695 0.98541 1.40475 1.41803 1.52941 2.41304
2.87859 3.13430 3.44824 3.79717 3.83720 3.99414 4.14148 4.24915
4.34838 4.47249 4.52820 4.62396 4.72037 4.77855 4.79392 4.91966
4.97965 5.03189 5.11553 5.16766 5.18351 5.31954 5.43495 5.53083
5.75443 5.86614 6.10564 6.23234 6.28729 6.42105 6.86146 7.38577
8.92099
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.055418 B = 0.004509 C = 0.004311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 505.130476 B = 6208.634440 C = 6494.148889
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C 0.000 4.000
3 Si 0.964 3.036
4 H -0.273 1.273
5 H -0.281 1.281
6 H -0.263 1.263
7 C -0.543 4.543
8 H 0.058 0.942
9 C 0.025 3.975
10 C -0.089 4.089
11 C 0.069 3.931
12 N -0.550 5.550
13 C 0.047 3.953
14 C -0.110 4.110
15 C -0.103 4.103
16 C -0.151 4.151
17 H 0.077 0.923
18 C 0.367 3.633
19 O -0.506 6.506
20 C 0.066 3.934
21 H 0.264 0.736
22 H -0.009 1.009
23 H -0.008 1.008
24 H 0.051 0.949
25 H 0.047 0.953
26 H 0.065 0.935
27 H 0.030 0.970
28 H 0.066 0.934
29 H 0.040 0.960
30 H 0.059 0.941
31 H 0.089 0.911
32 H 0.078 0.922
33 H 0.088 0.912
34 H 0.140 0.860
35 H 0.057 0.943
36 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.481 -17.724 4.564 19.105
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.198 4.198
3 Si 0.789 3.211
4 H -0.199 1.199
5 H -0.206 1.206
6 H -0.187 1.187
7 C -0.581 4.581
8 H 0.076 0.924
9 C -0.012 4.012
10 C -0.127 4.127
11 C -0.059 4.059
12 N -0.275 5.275
13 C -0.081 4.081
14 C -0.148 4.148
15 C -0.140 4.140
16 C -0.171 4.171
17 H 0.096 0.904
18 C 0.225 3.775
19 O -0.379 6.379
20 C -0.062 4.062
21 H 0.072 0.928
22 H 0.009 0.991
23 H 0.011 0.989
24 H 0.070 0.930
25 H 0.066 0.934
26 H 0.084 0.916
27 H 0.049 0.951
28 H 0.084 0.916
29 H 0.058 0.942
30 H 0.078 0.922
31 H 0.107 0.893
32 H 0.097 0.903
33 H 0.107 0.893
34 H 0.156 0.844
35 H 0.075 0.925
36 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 5.785 -17.887 3.642 19.149
hybrid contribution -0.499 1.233 0.440 1.401
sum 5.286 -16.655 4.082 17.944
Atomic orbital electron populations
1.70088 1.07782 1.27771 1.51757 1.25970 0.95765 1.03323 0.94708
0.85456 0.78708 0.78463 0.78487 1.19862 1.20621 1.18722 1.21692
0.93486 0.92452 1.50466 0.92383 1.18976 0.94421 0.93079 0.94766
1.21395 0.97959 0.92831 1.00542 1.21989 0.93464 0.90250 1.00158
1.61848 1.26658 1.02904 1.36050 1.22232 0.96122 1.00181 0.89539
1.21549 0.97066 0.93462 1.02742 1.21483 0.99260 0.97806 0.95498
1.22141 0.98719 0.94783 1.01446 0.90409 1.26497 0.79792 0.84718
0.86464 1.90408 1.58270 1.58444 1.30765 1.21913 0.94731 0.88017
1.01547 0.92760 0.99101 0.98928 0.92986 0.93388 0.91607 0.95134
0.91568 0.94158 0.92199 0.89286 0.90285 0.89297 0.84396 0.92461
0.91190
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16
2 C 0.00 0.00 5.46 84.66 0.46 0.46 16
3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16
4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16
5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16
6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16
7 C -0.54 -31.38 9.11 25.60 0.23 -31.14 16
8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16
9 C 0.03 1.34 4.97 29.85 0.15 1.49 16
10 C -0.09 -3.74 5.09 30.59 0.16 -3.58 16
11 C 0.07 2.34 4.96 86.30 0.43 2.77 16
12 N -0.55 -15.25 4.66 -896.37 -4.17 -19.42 16
13 C 0.05 1.12 5.29 86.33 0.46 1.58 16
14 C -0.11 -1.98 6.09 30.65 0.19 -1.80 16
15 C -0.10 -1.44 5.27 30.68 0.16 -1.28 16
16 C -0.15 -2.71 2.77 -11.49 -0.03 -2.74 16
17 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16
18 C 0.37 5.88 10.45 71.24 0.74 6.63 16
19 O -0.51 -12.88 17.90 -1.45 -0.03 -12.91 16
20 C 0.07 1.40 4.73 86.32 0.41 1.81 16
21 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16
22 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16
23 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16
24 H 0.05 2.11 6.44 -2.38 -0.02 2.10 16
25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
26 H 0.07 2.27 7.98 -2.38 -0.02 2.25 16
27 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16
28 H 0.07 1.83 6.22 -2.39 -0.01 1.81 16
29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16
30 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16
31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16
32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16
34 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16
35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
36 H 0.07 1.57 8.01 -2.39 -0.02 1.56 16
Total: -1.00 -69.07 293.17 2.49 -66.59
By element:
Atomic # 1 Polarization: 0.85 SS G_CDS: 1.02 Total: 1.87 kcal
Atomic # 6 Polarization: -29.16 SS G_CDS: 3.35 Total: -25.81 kcal
Atomic # 7 Polarization: -72.45 SS G_CDS: -3.89 Total: -76.34 kcal
Atomic # 8 Polarization: -12.88 SS G_CDS: -0.03 Total: -12.91 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal
Total: -69.07 2.49 -66.59 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054236979.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.397 kcal
(2) G-P(sol) polarization free energy of solvation -69.073 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.470 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.982 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds